Diff of the two buildlogs: -- --- b1/build.log 2021-08-04 06:37:32.145276261 +0000 +++ b2/build.log 2021-08-04 06:42:57.217053752 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Aug 3 18:05:00 -12 2021 -I: pbuilder-time-stamp: 1628057100 +I: Current time: Wed Sep 7 03:00:34 +14 2022 +I: pbuilder-time-stamp: 1662469234 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./plastimatch_1.9.3+dfsg.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.QyjJpTzN/trustedkeys.kbx': General error -gpgv: Signature made Fri Jan 22 08:18:57 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.7FBFenca/trustedkeys.kbx': General error +gpgv: Signature made Sat Jan 23 10:18:57 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,137 +28,171 @@ dpkg-source: info: unpacking plastimatch_1.9.3+dfsg.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/25368/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20695/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20695/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20695/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='ecec65bd04e54364b6894ac3f3d89e3c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='25368' - PS1='# ' - PS2='> ' + INVOCATION_ID=af8170af5c6e4b28b98dbd9c984c3b2c + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20695 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qba3XMFllb/pbuilderrc_OAHP --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qba3XMFllb/b1 --logfile b1/build.log plastimatch_1.9.3+dfsg.1-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qba3XMFllb/pbuilderrc_BsRL --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qba3XMFllb/b2 --logfile b2/build.log --extrapackages usrmerge plastimatch_1.9.3+dfsg.1-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5776 - -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Jul 28 07:09 more - -rwsr-xr-x 1 root root 50720 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 13856 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 1 21:26 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Jul 28 07:09 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/25368/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1367848 Jun 22 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Jul 29 2021 more + -rwsr-xr-x 1 root root 50720 Jul 29 2021 mount + -rwxr-xr-x 1 root root 13856 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 7 03:00 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 6 05:48 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Jul 29 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Jul 29 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/20695/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -347,7 +381,7 @@ Get: 125 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 libsqlite3-dev i386 3.34.1-3 [1001 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 uuid-dev i386 2.36.1-8 [99.2 kB] -Fetched 152 MB in 42s (3654 kB/s) +Fetched 152 MB in 5s (33.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -875,8 +909,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (3385 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 33100 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/plastimatch-1.9.3+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/plastimatch-1.9.3+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.9.3+dfsg.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1119,8 +1189,8 @@ -- Searching 16 bit integer -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian --- Checking host processor: i686 --- Checking target processor: i686 +-- Checking host processor: x86_64 +-- Checking target processor: x86_64 -- Checking epsilon: 2.22045E-16 2.22045E-16 2.22045E-16 -- Checking sign of char: char is signed -- Not appending /build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.0 @@ -1140,7 +1210,7 @@ -- Build files have been written to: /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu make[1]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1' dh_auto_build - cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.3+dfsg.1 -B/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/CMakeFiles /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -1150,13 +1220,13 @@ make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/devillard /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color= make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' @@ -1167,99 +1237,85 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/depend.internal". 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"/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/depend.internal". +make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build +Scanning dependencies of target nkidecompress make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -Scanning dependencies of target specfun -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake" is newer than depender 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make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/depend.internal". make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -Scanning dependencies of target plmclp +[ 0%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o [ 1%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/inih.dir/ini.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29/ini.c [ 1%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o -make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/inih.dir/INIReader.cpp.o -c /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29/INIReader.cpp -[ 1%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/devillard.dir/wirth.cpp.o -c /build/plastimatch-1.9.3+dfsg.1/libs/devillard/wirth.cpp -[ 1%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/inih.dir/INIReader.cpp.o -c /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29/INIReader.cpp +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/inih.dir/ini.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29/ini.c +[ 1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o Scanning dependencies of target plmsys -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress/nkidecompress.cxx -[ 1%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/specfun.dir/mpbdv.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/specfun/mpbdv.c make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/specfun.dir/mpbdv.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/specfun/mpbdv.c [ 1%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp/plm_clp.cxx -[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/dir_list.cxx -[ 1%] Linking CXX static library ../../libdevillard.a -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o -/usr/bin/ranlib ../../libdevillard.a -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 1%] Built target devillard +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 1%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress/nkidecompress.cxx +[ 1%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c [ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/dlib_threads.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/dlib_threads.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/file_util.cxx -[ 2%] Linking CXX static library ../../libnkidecompress.a -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake -[ 2%] Linking C static library ../../libspecfun.a -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -/usr/bin/ranlib ../../libnkidecompress.a -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 2%] Built target nkidecompress -/usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o -/usr/bin/ranlib ../../libspecfun.a -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/dir_list.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/logfile.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/option_range.cxx -[ 2%] Built target specfun +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/path_util.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_endian.cxx -[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx +[ 3%] Linking CXX static library ../../libdevillard.a +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o +/usr/bin/ranlib ../../libdevillard.a +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 3%] Built target devillard [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_sleep.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o @@ -1268,6 +1324,22 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/print_and_exit.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/string_util.cxx +[ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/delayload_legacy.c +[ 4%] Linking C static library ../../libspecfun.a +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake +[ 4%] Linking CXX static library ../../libnkidecompress.a +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 +/usr/bin/ranlib ../../libspecfun.a +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +/usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o +[ 4%] Built target specfun +/usr/bin/ranlib ../../libnkidecompress.a +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 4%] Built target nkidecompress [ 4%] Linking C static library ../../liblbfgs.a cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -P CMakeFiles/lbfgs.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgs.dir/link.txt --verbose=1 @@ -1275,8 +1347,6 @@ /usr/bin/ranlib ../../liblbfgs.a make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' [ 4%] Built target lbfgs -[ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/delayload_legacy.c [ 4%] Linking CXX static library ../../libinih.a cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/cmake -P CMakeFiles/inih.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/cmake -E cmake_link_script CMakeFiles/inih.dir/link.txt --verbose=1 @@ -1295,62 +1365,62 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/depend.internal". -[ 4%] Linking CXX static library libplmclp.a -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 -/usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o -/usr/bin/ranlib libplmclp.a -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 4%] Built target plmclp Scanning dependencies of target plmbase make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 4%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o +[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o +[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_warp.cxx +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/astroid_dose.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/aperture.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/beam_geometry.cxx -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_header.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/aperture.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_warp.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_extract.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_io.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_probe.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_util.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_cosines.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_io.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_probe.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_util.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_cosines.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_matrices.cxx +[ 8%] Linking CXX static library libplmclp.a +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 +/usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o +/usr/bin/ranlib libplmclp.a +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 8%] Built target plmclp [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/exchkeys.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/float_pair_list.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/float_pair_list.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/gaussian.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/gaussian.cxx +[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/hnd_io.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/image_stats.cxx +[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/interpolate.cxx -[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/hnd_io.cxx -[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o -[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_bbox.cxx +[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_directions.cxx +[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_accumulate.cxx @@ -1368,10 +1438,10 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx -[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx +[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o @@ -1434,14 +1504,14 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_warp.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx +[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset_warp.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Labeled_point]': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 65 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Point]': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] -[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset_warp.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image.cxx: In function 'void pfm_load(Proj_image*, const char*)': @@ -1552,6 +1622,18 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_convert.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx +[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_point.cxx +[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct.cxx +[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx +[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_demographic.cxx +[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dir.cxx +[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'itk::Transform::NumberOfParametersType' {aka 'long unsigned int'} [-Wformat=] 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); @@ -1559,6 +1641,12 @@ | | | | int itk::Transform::NumberOfParametersType {aka long unsigned int} | %ld +[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_patient.cxx +[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_plan.cxx +[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_load(Xform*, FILE*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 37 | fgets (buf,1024,fp); @@ -1584,26 +1672,14 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 168 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ -[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_point.cxx -[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c 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-I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx -[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu 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-I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dir.cxx -[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx -[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_patient.cxx -[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_plan.cxx -[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_studyset.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_studyset.cxx +[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xpm.cxx +[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_file.cxx +[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_image.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function 'void xio_dose_load_header(Xio_dose_header*, const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | fgets (line1, sizeof(line1), fp); @@ -1632,16 +1708,16 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xpm.cxx -[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_file.cxx -[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_image.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_module.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function 'void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:120:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fgets (buf, 1024, fp); @@ -1667,18 +1743,18 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:180:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 180 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_series.cxx +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_sro.cxx +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx: In member function 'void Dcmtk_rt_study::rt_ion_plan_load()': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:101:30: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] 101 | printf (">> Num beams = %d\n", num_beams); @@ -1698,12 +1774,6 @@ | | | | int long int | %ld -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_series.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_sro.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_util.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o @@ -1723,33 +1793,33 @@ make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dvh.cxx [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/bspline_correspond.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/distance_map.cxx +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dvh.cxx +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/diff.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/diff.cxx -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dice_statistics.cxx -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/geometry_chooser.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/distance_map.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/diff.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/diff.cxx +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/image_boundary.cxx +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/geometry_chooser.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/image_center.cxx +[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_adjust.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_crop.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/image_boundary.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_crop.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_adjust.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_distance_map.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_gabor.cxx @@ -1789,6 +1859,14 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/synthetic_vf.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/threshbox.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx +[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/volume_adjust.cxx +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/volume_boundary_type.cxx +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/xf_invert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/xf_invert.cxx +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/zcrop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/zcrop.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx: In function 'void do_overlap_fraction(Threshbox_parms*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx:257:8: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 257 | fscanf(fp1, "%s", tmpbuf); @@ -1802,14 +1880,6 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx:267:8: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 267 | fscanf(fp2, "%f %f %f", &phys_max2[0], &phys_max2[1], &phys_max2[2]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/volume_adjust.cxx -[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/volume_boundary_type.cxx -[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/xf_invert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/xf_invert.cxx -[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/zcrop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/zcrop.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/gabor.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/gabor.cxx [ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o @@ -1829,10 +1899,10 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/depend.internal". Scanning dependencies of target plmreconstruct @@ -1840,45 +1910,41 @@ make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' [ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx +[ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr.cxx +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/fdk.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx Scanning dependencies of target plmdose make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_map.cxx -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/bragg_curve.cxx [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/compute_dose.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/compute_dose.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx +[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o +[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_map.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/particle_type.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/bragg_curve.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/particle_type.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx -Scanning dependencies of target plmregister -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build -/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': -/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 194 | fgets (linebuf, 128, fp); - | ~~~~~~^~~~~~~~~~~~~~~~~~ -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx +[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_lut.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function 'bool Rt_depth_dose::load(const char*)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 64 | fgets (linebuf, 128, fp); @@ -1899,44 +1965,36 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline.cxx -[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx -[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_lut.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx +Scanning dependencies of target plmregister +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_parms.cxx -[ 57%] Linking CXX shared library ../../../libplmreconstruct.so -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a -lpthread -ldl /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o +[ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o +[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline.cxx +[ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_sigma.cxx -[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o +[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx -[ 58%] Built target plmreconstruct -[ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o +[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_gm.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o +[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mi.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o +[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx +/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': +/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 194 | fgets (linebuf, 128, fp); + | ~~~~~~^~~~~~~~~~~~~~~~~~ +[ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mse.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx -[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mi.cxx: In function 'void bspline_mi_hist_lookup(long int*, long int*, long int*, float*, Joint_histogram*, float, float)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mi.cxx:210:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'plm_long' {aka 'int'} [-Wformat=] 210 | "Bin %ld from val %g parms [off=%g, delt=%g, (%ld bins)]\n", @@ -1959,6 +2017,15 @@ | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka int} +[ 59%] Linking CXX shared library ../../../libplmreconstruct.so +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 +[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize.cxx +[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a -lpthread -ldl /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a +[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o @@ -1967,6 +2034,9 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_parms.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_score.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 61%] Built target plmreconstruct [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_stage.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o @@ -1981,9 +2051,6 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/demons.cxx -[ 63%] Linking CXX shared library ../../../libplmdose.so -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -lpthread -ldl /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/demons_cpu.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o @@ -1992,10 +2059,10 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/gpuit_demons.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/groupwise_parms.cxx -[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/histogram.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_align_center.cxx +[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/histogram.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_demons.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o @@ -2008,17 +2075,20 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_log_demons.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 66%] Built target plmdose [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_optimizer.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_registration.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx +[ 67%] Linking CXX shared library ../../../libplmdose.so +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -lpthread -ldl /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_tps.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 67%] Built target plmdose [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/joint_histogram.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o @@ -2072,35 +2142,35 @@ make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o +[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel.cxx +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_task.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_staple.cxx +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_parms.cxx -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_stats.cxx -[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_staple.cxx -[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_vote.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/ml_convert.cxx @@ -2118,59 +2188,106 @@ make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/depend.internal". Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend.internal". Scanning dependencies of target landmark_diff +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend.internal". make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend.internal". Scanning dependencies of target dlib_train +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". +Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +Scanning dependencies of target hnd_to_pfm make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -Scanning dependencies of target demons make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build +Scanning dependencies of target bragg_curve +Scanning dependencies of target demons +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend.internal". -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' [ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_main.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dlib_train.cxx cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dlib_train.cxx +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o Scanning dependencies of target dicom_uid +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_main.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' @@ -2179,270 +2296,220 @@ make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' [ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o +Scanning dependencies of target shuffle_mha cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch 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-D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_info.cxx -Scanning dependencies of target compute_distance -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -Scanning dependencies of target xvi_archive -make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/compute_distance.cxx -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx -[ 78%] Linking CXX executable ../../../landmark_diff -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_opts.cxx -Scanning dependencies of target plastimatch make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build -[ 79%] Linking CXX executable ../../../demons -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_add.cxx -[ 79%] Linking CXX executable ../../../dicom_uid -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 79%] Built target landmark_diff -make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend 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"/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/depend.internal". +make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build Scanning dependencies of target wed make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 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dicom_uid -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone 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Scanning dependencies of target check_grad +Scanning dependencies of target sobp make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util 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-I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/check_grad.cxx -[ 81%] Linking CXX executable ../../../wed -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/closest_point.cxx -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 81%] Built target wed -make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend.internal". -Scanning dependencies of target hnd_to_pfm make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx -[ 81%] Linking CXX executable ../../../hnd_to_pfm -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/read_obj.cxx -[ 82%] Linking CXX executable ../../../shuffle_mha -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 82%] Built target hnd_to_pfm -make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend.internal". Scanning dependencies of target merge_vfs +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +Scanning dependencies of target xvi_archive +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build +[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_info.cxx make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx -[ 82%] Linking CXX executable ../../../compute_distance -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 82%] Built target shuffle_mha -make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend.internal". -Scanning dependencies of target bragg_curve +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/wed.dir/wed_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/wed_main.cxx +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o +Scanning dependencies of target compute_distance +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build +make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/sobp_main.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/check_grad.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx -[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/compute_distance.cxx +[ 81%] Linking CXX executable ../../../landmark_diff +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx -[ 82%] Linking CXX executable ../../../bragg_curve +[ 81%] Linking CXX executable ../../../hnd_to_pfm +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 81%] Linking CXX executable ../../../bragg_curve cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +Scanning dependencies of target plastimatch make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 82%] Built target compute_distance -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend -make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". -Dependee "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/depend.internal". -Scanning dependencies of target sobp -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build +make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build make[3]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/sobp_main.cxx +[ 81%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_add.cxx +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_opts.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 83%] Built target bragg_curve -[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o +[ 81%] Built target landmark_diff +[ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx -[ 84%] Linking CXX executable ../../../sobp -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 84%] Built target sobp -[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o +[ 82%] Built target bragg_curve +[ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx -[ 84%] Linking CXX executable ../../../check_grad -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 85%] Linking CXX executable ../../../dicom_info -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 86%] Linking CXX executable ../../../xvi_archive -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 83%] Linking CXX executable ../../../demons +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 86%] Built target check_grad -[ 86%] Built target dicom_info -[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o +[ 83%] Built target hnd_to_pfm +[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx -[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o +[ 83%] Linking CXX executable ../../../dicom_uid +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 83%] Linking CXX executable ../../../sobp +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 83%] Linking CXX executable ../../../wed +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 83%] Built target demons +[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 86%] Built target xvi_archive -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o +[ 83%] Built target dicom_uid +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 84%] Built target sobp +[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/closest_point.cxx +[ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/read_obj.cxx +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 85%] Built target wed +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o +[ 85%] Linking CXX executable ../../../shuffle_mha +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 85%] Built target shuffle_mha +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o +[ 85%] Linking CXX executable ../../../compute_distance +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 85%] Built target compute_distance +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx -[ 89%] Linking CXX executable ../../../merge_vfs -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx -[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o +[ 87%] Linking CXX executable ../../../dicom_info +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 87%] Linking CXX executable ../../../check_grad +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 88%] Linking CXX executable ../../../xvi_archive +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx -[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 90%] Built target merge_vfs -[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o +[ 89%] Built target dicom_info +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx -[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 89%] Built target check_grad +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dvh.cxx -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_fdk.cxx -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_header.cxx -[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 90%] Built target xvi_archive +[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_intersect.cxx +[ 92%] Linking CXX executable ../../../merge_vfs +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx -[ 93%] Linking CXX executable ../../../dlib_train -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o +[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_lm_warp.cxx -[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 93%] Built target dlib_train -[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o +[ 92%] Built target merge_vfs +[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_mask.cxx -[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx -[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx -[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx -[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o +[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_probe.cxx -[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o +[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_register.cxx -[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o +[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_resample.cxx -[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_scale.cxx -[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_segment.cxx -[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_sift.cxx +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_stats.cxx -[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o +[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_synth.cxx -[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o +[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_synth_vf.cxx -[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o +[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_threshold.cxx -[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o +[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_thumbnail.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o +[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_union.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o +[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_warp.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o +[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_warp_dij.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o +[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_warp_pointset.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o +[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_wed.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o +[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx +[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function 'void do_command_xio_dvh(int, char**)': /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets(buf, 200, fp); //XiO Dose Volume Histogram @@ -2471,14 +2538,17 @@ /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:78:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fgets(buf, 200, fp); | ~~~~~^~~~~~~~~~~~~~ -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o +[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx -[100%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o +[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx -[100%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o +[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -I/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/plastimatch_startup.cxx +[100%] Linking CXX executable ../../../dlib_train +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 +/usr/bin/c++ 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/usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 +make[3]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[100%] Built target dlib_train [100%] Linking CXX executable ../../../plastimatch cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/plastimatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/plastimatch.dir/pcmd_add.cxx.o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o 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CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -o ../../../plastimatch -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/i386-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/i386-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/i386-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a /usr/lib/i386-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmimage.so.15.3.6.5 -ltiff -lxml2 /usr/lib/i386-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/i386-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/i386-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/i386-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/i386-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/i386-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/i386-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 @@ -2490,10 +2560,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/plastimatch-1.9.3+dfsg.1' dh_auto_test - cd obj-i686-linux-gnu && make -j8 test ARGS\+=-j8 + cd obj-i686-linux-gnu && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j8 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu Start 10: gauss-1 Start 11: gauss-2 @@ -2503,1144 +2573,1144 @@ Start 1: black-1 Start 2: cyl-1 Start 3: cyl-mask-2 - 1/571 Test #2: cyl-1 ................................. Passed 0.28 sec Start 5: cyl-mask-3 - 2/571 Test #11: gauss-2 ............................... Passed 0.29 sec Start 7: donut-1 - 3/571 Test #12: gauss-3 ............................... Passed 0.29 sec Start 8: donut-2 - 4/571 Test #14: gauss-5 ............................... Passed 0.29 sec Start 9: gabor-01 - 5/571 Test #10: gauss-1 ............................... Passed 0.31 sec Start 13: gauss-4 - 6/571 Test #1: black-1 ............................... Passed 0.29 sec Start 15: gauss-6 - 7/571 Test #3: cyl-mask-2 ............................ Passed 0.29 sec Start 17: gauss-double-1 - 8/571 Test #8: donut-2 ............................... Passed 0.19 sec + 1/571 Test #12: gauss-3 ............................... Passed 0.12 sec Start 18: gauss-double-2 - 9/571 Test #28: rect-1 ................................ Passed 0.50 sec + 2/571 Test #10: gauss-1 ............................... Passed 0.15 sec Start 19: gauss-ushort-1 - 10/571 Test #17: gauss-double-1 ........................ Passed 0.21 sec + 3/571 Test #11: gauss-2 ............................... Passed 0.15 sec Start 20: gauss-ushort-2 - 11/571 Test #9: gabor-01 .............................. Passed 0.22 sec + 4/571 Test #14: gauss-5 ............................... Passed 0.15 sec Start 21: lung-1 - 12/571 Test #13: gauss-4 ............................... Passed 0.22 sec + 5/571 Test #1: black-1 ............................... Passed 0.15 sec Start 26: ptv-1 - 13/571 Test #5: cyl-mask-3 ............................ Passed 0.25 sec + 6/571 Test #9: gabor-01 .............................. Passed 0.15 sec Start 27: ptv-2 - 14/571 Test #15: gauss-6 ............................... Passed 0.24 sec + 7/571 Test #3: cyl-mask-2 ............................ Passed 0.16 sec Start 29: rect-2 - 15/571 Test #18: gauss-double-2 ........................ Passed 0.20 sec + 8/571 Test #2: cyl-1 ................................. Passed 0.16 sec Start 30: rect-2s - 16/571 Test #20: gauss-ushort-2 ........................ Passed 0.19 sec + 9/571 Test #8: donut-2 ............................... Passed 0.16 sec Start 31: rect-3 - 17/571 Test #7: donut-1 ............................... Passed 0.42 sec + 10/571 Test #5: cyl-mask-3 ............................ Passed 0.17 sec Start 32: rect-4 - 18/571 Test #19: gauss-ushort-1 ........................ Passed 0.24 sec + 11/571 Test #13: gauss-4 ............................... Passed 0.16 sec Start 33: rect-5 - 19/571 Test #27: ptv-2 ................................. Passed 0.23 sec + 12/571 Test #17: gauss-double-1 ........................ Passed 0.16 sec Start 39: rect-10-roi-1 - 20/571 Test #26: ptv-1 ................................. Passed 0.27 sec + 13/571 Test #15: gauss-6 ............................... Passed 0.17 sec Start 42: rect-11-roi - 21/571 Test #30: rect-2s ............................... Passed 0.19 sec + 14/571 Test #18: gauss-double-2 ........................ Passed 0.14 sec Start 43: rect-12 - 22/571 Test #33: rect-5 ................................ Passed 0.18 sec + 15/571 Test #19: gauss-ushort-1 ........................ Passed 0.12 sec Start 44: rect-13 - 23/571 Test #32: rect-4 ................................ Passed 0.23 sec + 16/571 Test #20: gauss-ushort-2 ........................ Passed 0.13 sec Start 45: rect-14 - 24/571 Test #39: rect-10-roi-1 ......................... Passed 0.21 sec + 17/571 Test #30: rect-2s ............................... Passed 0.14 sec Start 46: rect-15 - 25/571 Test #42: rect-11-roi ........................... Passed 0.20 sec + 18/571 Test #33: rect-5 ................................ Passed 0.13 sec Start 47: rect-16 - 26/571 Test #29: rect-2 ................................ Passed 0.47 sec + 19/571 Test #27: ptv-2 ................................. Passed 0.16 sec Start 48: rect-17 - 27/571 Test #43: rect-12 ............................... Passed 0.20 sec + 20/571 Test #39: rect-10-roi-1 ......................... Passed 0.14 sec Start 56: rectarr-03-a - 28/571 Test #44: rect-13 ............................... Passed 0.19 sec + 21/571 Test #26: ptv-1 ................................. Passed 0.17 sec Start 61: sphere-1 - 29/571 Test #45: rect-14 ............................... Passed 0.19 sec + 22/571 Test #32: rect-4 ................................ Passed 0.15 sec Start 62: sphere-2 - 30/571 Test #46: rect-15 ............................... Passed 0.19 sec + 23/571 Test #42: rect-11-roi ........................... Passed 0.15 sec Start 63: sphere-3 - 31/571 Test #47: rect-16 ............................... Passed 0.19 sec + 24/571 Test #28: rect-1 ................................ Passed 0.34 sec Start 65: sphere-5 - 32/571 Test #31: rect-3 ................................ Passed 0.50 sec + 25/571 Test #7: donut-1 ............................... Passed 0.34 sec Start 71: vf-zero - 33/571 Test #48: rect-17 ............................... Passed 0.23 sec + 26/571 Test #43: rect-12 ............................... Passed 0.14 sec Start 72: vf-trans-1 - 34/571 Test #56: rectarr-03-a .......................... Passed 0.20 sec + 27/571 Test #44: rect-13 ............................... Passed 0.14 sec Start 73: vf-trans-2 - 35/571 Test #61: sphere-1 .............................. Passed 0.19 sec + 28/571 Test #45: rect-14 ............................... Passed 0.13 sec Start 98: drr-a - 36/571 Test #62: sphere-2 .............................. Passed 0.21 sec + 29/571 Test #47: rect-16 ............................... Passed 0.12 sec Start 186: plm-convert-dicom-a - 37/571 Test #63: sphere-3 .............................. Passed 0.19 sec + 30/571 Test #46: rect-15 ............................... Passed 0.15 sec Start 281: plm-reg-itk-translation - 38/571 Test #65: sphere-5 .............................. Passed 0.18 sec + 31/571 Test #61: sphere-1 .............................. Passed 0.13 sec Start 313: plm-bsp-mse-h - 39/571 Test #71: vf-zero ............................... Passed 0.23 sec + 32/571 Test #48: rect-17 ............................... Passed 0.15 sec Start 336: plm-bsp-mi-c-2 - 40/571 Test #72: vf-trans-1 ............................ Passed 0.18 sec + 33/571 Test #56: rectarr-03-a .......................... Passed 0.15 sec Start 439: plm-reg-compose - 41/571 Test #73: vf-trans-2 ............................ Passed 0.18 sec + 34/571 Test #62: sphere-2 .............................. Passed 0.15 sec Start 526: plm-xf-convert-d - 42/571 Test #526: plm-xf-convert-d ...................... Passed 0.28 sec + 35/571 Test #65: sphere-5 .............................. Passed 0.13 sec Start 4: cyl-2 - 43/571 Test #98: drr-a ................................. Passed 0.44 sec + 36/571 Test #29: rect-2 ................................ Passed 0.33 sec Start 6: cyl-3 - 44/571 Test #186: plm-convert-dicom-a ................... Passed 0.50 sec + 37/571 Test #63: sphere-3 .............................. Passed 0.16 sec Start 22: lung-2 - 45/571 Test #281: plm-reg-itk-translation ............... Passed 0.50 sec + 38/571 Test #71: vf-zero ............................... Passed 0.15 sec Start 36: rect-8 - 46/571 Test #313: plm-bsp-mse-h ......................... Passed 0.64 sec + 39/571 Test #31: rect-3 ................................ Passed 0.37 sec Start 37: rect-9 - 47/571 Test #439: plm-reg-compose ....................... Passed 0.69 sec + 40/571 Test #72: vf-trans-1 ............................ Passed 0.14 sec Start 51: rectarr-01-a - 48/571 Test #4: cyl-2 ................................. Passed 0.40 sec + 41/571 Test #73: vf-trans-2 ............................ Passed 0.13 sec Start 57: rectarr-03 - 49/571 Test #36: rect-8 ................................ Passed 0.29 sec + 42/571 Test #36: rect-8 ................................ Passed 0.16 sec Start 58: rectarr-04 - 50/571 Test #6: cyl-3 ................................. Passed 0.37 sec + 43/571 Test #526: plm-xf-convert-d ...................... Passed 0.19 sec Start 66: sphere-6 - 51/571 Test #37: rect-9 ................................ Passed 0.18 sec + 44/571 Test #51: rectarr-01-a .......................... Passed 0.14 sec Start 67: sphere-7 - 52/571 Test #51: rectarr-01-a .......................... Passed 0.18 sec + 45/571 Test #186: plm-convert-dicom-a ................... Passed 0.26 sec Start 74: vf-radial-1 - 53/571 Test #57: rectarr-03 ............................ Passed 0.22 sec + 46/571 Test #4: cyl-2 ................................. Passed 0.22 sec Start 90: plm-diff-a - 54/571 Test #66: sphere-6 .............................. Passed 0.25 sec + 47/571 Test #37: rect-9 ................................ Passed 0.18 sec Start 93: plm-diff-b - 55/571 Test #67: sphere-7 .............................. Passed 0.19 sec + 48/571 Test #6: cyl-3 ................................. Passed 0.27 sec Start 101: drr-b - 56/571 Test #58: rectarr-04 ............................ Passed 0.31 sec + 49/571 Test #57: rectarr-03 ............................ Passed 0.23 sec Start 104: drr-c - 57/571 Test #74: vf-radial-1 ........................... Passed 0.21 sec + 50/571 Test #313: plm-bsp-mse-h ......................... Passed 0.35 sec + Start 113: landmark-warp-a + 51/571 Test #98: drr-a ................................. Passed 0.43 sec Start 107: fdk-cpu-a - 58/571 Test #90: plm-diff-a ............................ Passed 0.24 sec + 52/571 Test #74: vf-radial-1 ........................... Passed 0.17 sec Start 110: fdk-cpu-d - 59/571 Test #93: plm-diff-b ............................ Passed 0.22 sec - Start 113: landmark-warp-a - 60/571 Test #104: drr-c ................................. Passed 1.07 sec + 53/571 Test #281: plm-reg-itk-translation ............... Passed 0.41 sec Start 118: landmark-warp-b - 61/571 Test #113: landmark-warp-a ....................... Passed 1.11 sec + 54/571 Test #67: sphere-7 .............................. Passed 0.19 sec Start 123: landmark-warp-c - 62/571 Test #101: drr-b ................................. Passed 1.42 sec + 55/571 Test #58: rectarr-04 ............................ Passed 0.22 sec Start 129: plm-add-a - 63/571 Test #21: lung-1 ................................ Passed 3.46 sec + 56/571 Test #66: sphere-6 .............................. Passed 0.23 sec Start 132: plm-add-b - 64/571 Test #118: landmark-warp-b ....................... Passed 0.62 sec + 57/571 Test #90: plm-diff-a ............................ Passed 0.23 sec Start 135: plm-add-vf-a - 65/571 Test #123: landmark-warp-c ....................... Passed 0.34 sec + 58/571 Test #439: plm-reg-compose ....................... Passed 0.47 sec Start 138: plm-add-vf-b - 66/571 Test #129: plm-add-a ............................. Passed 0.23 sec + 59/571 Test #93: plm-diff-b ............................ Passed 0.24 sec Start 141: plm-adjust-a - 67/571 Test #132: plm-add-b ............................. Passed 0.23 sec + 60/571 Test #113: landmark-warp-a ....................... Passed 0.30 sec Start 144: plm-adjust-b - 68/571 Test #135: plm-add-vf-a .......................... Passed 0.22 sec + 61/571 Test #123: landmark-warp-c ....................... Passed 0.26 sec Start 147: plm-adjust-c - 69/571 Test #138: plm-add-vf-b .......................... Passed 0.23 sec + 62/571 Test #129: plm-add-a ............................. Passed 0.26 sec Start 150: plm-adjust-d - 70/571 Test #141: plm-adjust-a .......................... Passed 0.26 sec + 63/571 Test #138: plm-add-vf-b .......................... Passed 0.26 sec Start 153: plm-adjust-e - 71/571 Test #144: plm-adjust-b .......................... Passed 0.23 sec + 64/571 Test #135: plm-add-vf-a .......................... Passed 0.28 sec Start 156: plm-adjust-f - 72/571 Test #147: plm-adjust-c .......................... Passed 0.23 sec + 65/571 Test #118: landmark-warp-b ....................... Passed 0.38 sec Start 159: plm-adjust-g - 73/571 Test #150: plm-adjust-d .......................... Passed 0.22 sec + 66/571 Test #132: plm-add-b ............................. Passed 0.41 sec Start 162: plm-adjust-h - 74/571 Test #153: plm-adjust-e .......................... Passed 0.24 sec + 67/571 Test #141: plm-adjust-a .......................... Passed 0.40 sec Start 165: plm-adjust-i - 75/571 Test #156: plm-adjust-f .......................... Passed 0.37 sec + 68/571 Test #147: plm-adjust-c .......................... Passed 0.24 sec Start 168: plm-adjust-j - 76/571 Test #159: plm-adjust-g .......................... Passed 0.47 sec + 69/571 Test #144: plm-adjust-b .......................... Passed 0.34 sec Start 171: plm-boundary-a - 77/571 Test #162: plm-adjust-h .......................... Passed 0.54 sec + 70/571 Test #150: plm-adjust-d .......................... Passed 0.33 sec Start 174: plm-boundary-b - 78/571 Test #165: plm-adjust-i .......................... Passed 0.42 sec + 71/571 Test #101: drr-b ................................. Passed 0.74 sec Start 177: plm-boundary-c - 79/571 Test #336: plm-bsp-mi-c-2 ........................ Passed 3.82 sec + 72/571 Test #104: drr-c ................................. Passed 0.74 sec Start 180: plm-boundary-d - 80/571 Test #168: plm-adjust-j .......................... Passed 0.25 sec + 73/571 Test #159: plm-adjust-g .......................... Passed 0.29 sec Start 183: plm-boundary-e - 81/571 Test #171: plm-boundary-a ........................ Passed 0.16 sec + 74/571 Test #156: plm-adjust-f .......................... Passed 0.36 sec Start 189: plm-convert-dicom-b - 82/571 Test #174: plm-boundary-b ........................ Passed 0.19 sec - Start 192: plm-convert-dicom-c - 83/571 Test #177: plm-boundary-c ........................ Passed 0.19 sec + 75/571 Test #153: plm-adjust-e .......................... Passed 0.38 sec Start 198: plm-convert-dicom-donut-a - 84/571 Test #180: plm-boundary-d ........................ Passed 0.19 sec + 76/571 Test #171: plm-boundary-a ........................ Passed 0.18 sec Start 201: plm-convert-dicom-donut-b - 85/571 Test #107: fdk-cpu-a ............................. Passed 2.99 sec + 77/571 Test #162: plm-adjust-h .......................... Passed 0.32 sec Start 205: plm-convert-cxt - 86/571 Test #183: plm-boundary-e ........................ Passed 0.28 sec + 78/571 Test #174: plm-boundary-b ........................ Passed 0.19 sec Start 209: plm-convert-dose-scale - 87/571 Test #201: plm-convert-dicom-donut-b ............. Passed 0.22 sec + 79/571 Test #177: plm-boundary-c ........................ Passed 0.19 sec Start 212: plm-crop-a - 88/571 Test #198: plm-convert-dicom-donut-a ............. Passed 0.31 sec + 80/571 Test #180: plm-boundary-d ........................ Passed 0.19 sec Start 215: plm-crop-b - 89/571 Test #189: plm-convert-dicom-b ................... Passed 0.40 sec + 81/571 Test #183: plm-boundary-e ........................ Passed 0.19 sec Start 218: plm-crop-c - 90/571 Test #209: plm-convert-dose-scale ................ Passed 0.22 sec + 82/571 Test #165: plm-adjust-i .......................... Passed 0.38 sec Start 252: plm-fill-a - 91/571 Test #212: plm-crop-a ............................ Passed 0.23 sec + 83/571 Test #168: plm-adjust-j .......................... Passed 0.40 sec Start 255: plm-mask-a - 92/571 Test #215: plm-crop-b ............................ Passed 0.22 sec + 84/571 Test #198: plm-convert-dicom-donut-a ............. Passed 0.20 sec Start 258: plm-gamma-a - 93/571 Test #218: plm-crop-c ............................ Passed 0.21 sec + 85/571 Test #189: plm-convert-dicom-b ................... Passed 0.23 sec Start 261: plm-gamma-b - 94/571 Test #252: plm-fill-a ............................ Passed 0.25 sec + 86/571 Test #205: plm-convert-cxt ....................... Passed 0.21 sec Start 268: plm-maximum-a - 95/571 Test #205: plm-convert-cxt ....................... Passed 0.49 sec + 87/571 Test #201: plm-convert-dicom-donut-b ............. Passed 0.23 sec Start 271: plm-multiply-a - 96/571 Test #22: lung-2 ................................ Passed 4.25 sec + 88/571 Test #209: plm-convert-dose-scale ................ Passed 0.19 sec Start 274: plm-multiply-vf-a - 97/571 Test #192: plm-convert-dicom-c ................... Passed 0.71 sec + 89/571 Test #336: plm-bsp-mi-c-2 ........................ Passed 1.45 sec Start 278: plm-reg-align-center - 98/571 Test #255: plm-mask-a ............................ Passed 0.23 sec + 90/571 Test #107: fdk-cpu-a ............................. Passed 1.08 sec Start 284: plm-reg-itk-rigid-a - 99/571 Test #261: plm-gamma-b ........................... Passed 0.29 sec + 91/571 Test #215: plm-crop-b ............................ Passed 0.22 sec Start 289: plm-reg-itk-similarity -100/571 Test #271: plm-multiply-a ........................ Passed 0.24 sec + 92/571 Test #212: plm-crop-a ............................ Passed 0.23 sec Start 294: plm-reg-itk-bspline -101/571 Test #268: plm-maximum-a ......................... Passed 0.28 sec + 93/571 Test #252: plm-fill-a ............................ Passed 0.23 sec Start 297: plm-reg-itk-demons -102/571 Test #258: plm-gamma-a ........................... Passed 0.40 sec + 94/571 Test #218: plm-crop-c ............................ Passed 0.25 sec Start 307: plm-bsp-mse-c -103/571 Test #274: plm-multiply-vf-a ..................... Passed 0.30 sec + 95/571 Test #255: plm-mask-a ............................ Passed 0.21 sec Start 310: plm-bsp-mse-g -104/571 Test #278: plm-reg-align-center .................. Passed 0.30 sec + 96/571 Test #261: plm-gamma-b ........................... Passed 0.21 sec Start 316: plm-bsp-mse-i -105/571 Test #284: plm-reg-itk-rigid-a ................... Passed 0.61 sec + 97/571 Test #268: plm-maximum-a ......................... Passed 0.20 sec Start 319: plm-bsp-mse-k -106/571 Test #307: plm-bsp-mse-c ......................... Passed 0.52 sec + 98/571 Test #271: plm-multiply-a ........................ Passed 0.19 sec Start 322: plm-bsp-mse-l -107/571 Test #310: plm-bsp-mse-g ......................... Passed 0.58 sec + 99/571 Test #274: plm-multiply-vf-a ..................... Passed 0.20 sec Start 333: plm-bsp-mi-c -108/571 Test #316: plm-bsp-mse-i ......................... Passed 0.75 sec +100/571 Test #278: plm-reg-align-center .................. Passed 0.19 sec Start 339: plm-bsp-mi-k -109/571 Test #289: plm-reg-itk-similarity ................ Passed 0.93 sec +101/571 Test #258: plm-gamma-a ........................... Passed 0.36 sec Start 342: plm-bsp-gm-k -110/571 Test #322: plm-bsp-mse-l ......................... Passed 0.67 sec +102/571 Test #307: plm-bsp-mse-c ......................... Passed 0.30 sec Start 347: plm-bsp-openmp -111/571 Test #297: plm-reg-itk-demons .................... Passed 1.22 sec +103/571 Test #310: plm-bsp-mse-g ......................... Passed 0.39 sec Start 354: plm-bsp-ushort -112/571 Test #319: plm-bsp-mse-k ......................... Passed 0.86 sec +104/571 Test #284: plm-reg-itk-rigid-a ................... Passed 0.46 sec Start 357: plm-bsp-double -113/571 Test #342: plm-bsp-gm-k .......................... Passed 0.73 sec +105/571 Test #319: plm-bsp-mse-k ......................... Passed 0.35 sec Start 361: plm-bsp-char-output -114/571 Test #333: plm-bsp-mi-c .......................... Passed 1.03 sec +106/571 Test #322: plm-bsp-mse-l ......................... Passed 0.35 sec Start 365: plm-bsp-regularize-none -115/571 Test #347: plm-bsp-openmp ........................ Passed 0.72 sec +107/571 Test #316: plm-bsp-mse-i ......................... Passed 0.40 sec Start 368: plm-bsp-regularize-analytic -116/571 Test #357: plm-bsp-double ........................ Passed 0.70 sec +108/571 Test #289: plm-reg-itk-similarity ................ Passed 0.52 sec Start 371: plm-bsp-regularize-numeric -117/571 Test #354: plm-bsp-ushort ........................ Passed 0.92 sec +109/571 Test #333: plm-bsp-mi-c .......................... Passed 0.44 sec Start 375: plm-bsp-landmark-b -118/571 Test #294: plm-reg-itk-bspline ................... Passed 2.21 sec +110/571 Test #339: plm-bsp-mi-k .......................... Passed 0.48 sec Start 378: plm-bsp-landmark-c -119/571 Test #361: plm-bsp-char-output ................... Passed 0.61 sec +111/571 Test #342: plm-bsp-gm-k .......................... Passed 0.51 sec Start 381: plm-bsp-landmark-d -120/571 Test #339: plm-bsp-mi-k .......................... Passed 1.41 sec +112/571 Test #347: plm-bsp-openmp ........................ Passed 0.48 sec Start 384: plm-bsp-landmark-e -121/571 Test #365: plm-bsp-regularize-none ............... Passed 0.68 sec +113/571 Test #361: plm-bsp-char-output ................... Passed 0.39 sec Start 387: plm-bsp-dcos-a -122/571 Test #110: fdk-cpu-d ............................. Passed 6.19 sec +114/571 Test #297: plm-reg-itk-demons .................... Passed 0.84 sec Start 390: plm-bsp-dcos-b -123/571 Test #384: plm-bsp-landmark-e .................... Passed 0.86 sec +115/571 Test #354: plm-bsp-ushort ........................ Passed 0.50 sec Start 393: plm-bsp-dcos-c -124/571 Test #375: plm-bsp-landmark-b .................... Passed 1.15 sec +116/571 Test #357: plm-bsp-double ........................ Passed 0.49 sec Start 396: plm-bsp-dcos-d -125/571 Test #381: plm-bsp-landmark-d .................... Passed 1.16 sec +117/571 Test #375: plm-bsp-landmark-b .................... Passed 0.44 sec Start 399: plm-bsp-dcos-e -126/571 Test #378: plm-bsp-landmark-c .................... Passed 1.20 sec +118/571 Test #365: plm-bsp-regularize-none ............... Passed 0.67 sec Start 402: plm-bsp-dcos-f -127/571 Test #387: plm-bsp-dcos-a ........................ Passed 1.13 sec +119/571 Test #294: plm-reg-itk-bspline ................... Passed 1.16 sec Start 405: plm-reg-multi-a -128/571 Test #368: plm-bsp-regularize-analytic ........... Passed 1.67 sec +120/571 Test #381: plm-bsp-landmark-d .................... Passed 0.46 sec Start 408: plm-reg-multi-b -129/571 Test #390: plm-bsp-dcos-b ........................ Passed 1.16 sec +121/571 Test #378: plm-bsp-landmark-c .................... Passed 0.58 sec Start 411: plm-reg-dv-itk-translation -130/571 Test #393: plm-bsp-dcos-c ........................ Passed 0.78 sec +122/571 Test #384: plm-bsp-landmark-e .................... Passed 0.47 sec Start 420: plm-reg-process-a -131/571 Test #402: plm-bsp-dcos-f ........................ Passed 0.69 sec +123/571 Test #393: plm-bsp-dcos-c ........................ Passed 0.56 sec Start 423: plm-reg-trans-a -132/571 Test #396: plm-bsp-dcos-d ........................ Passed 0.90 sec +124/571 Test #396: plm-bsp-dcos-d ........................ Passed 0.59 sec Start 426: plm-reg-trans-b -133/571 Test #399: plm-bsp-dcos-e ........................ Passed 0.90 sec +125/571 Test #387: plm-bsp-dcos-a ........................ Passed 0.69 sec Start 429: plm-reg-trans-mi-a -134/571 Test #405: plm-reg-multi-a ....................... Passed 0.85 sec +126/571 Test #368: plm-bsp-regularize-analytic ........... Passed 1.08 sec Start 432: plm-reg-autores-a -135/571 Test #411: plm-reg-dv-itk-translation ............ Passed 0.79 sec +127/571 Test #399: plm-bsp-dcos-e ........................ Passed 0.56 sec Start 435: plm-reg-autores-b -136/571 Test #420: plm-reg-process-a ..................... Passed 0.52 sec +128/571 Test #420: plm-reg-process-a ..................... Passed 0.28 sec Start 440: plm-compose-a -137/571 Test #408: plm-reg-multi-b ....................... Passed 1.41 sec +129/571 Test #402: plm-bsp-dcos-f ........................ Passed 0.46 sec Start 444: plm-compose-b -138/571 Test #440: plm-compose-a ......................... Passed 0.52 sec +130/571 Test #390: plm-bsp-dcos-b ........................ Passed 0.72 sec Start 448: plm-compose-c -139/571 Test #444: plm-compose-b ......................... Passed 0.23 sec +131/571 Test #440: plm-compose-a ......................... Passed 0.19 sec Start 452: plm-resample-a -140/571 Test #448: plm-compose-c ......................... Passed 0.38 sec +132/571 Test #444: plm-compose-b ......................... Passed 0.18 sec Start 455: plm-resample-b -141/571 Test #452: plm-resample-a ........................ Passed 0.21 sec +133/571 Test #411: plm-reg-dv-itk-translation ............ Passed 0.58 sec Start 458: plm-resample-c -142/571 Test #455: plm-resample-b ........................ Passed 0.25 sec +134/571 Test #448: plm-compose-c ......................... Passed 0.30 sec Start 461: plm-scale-a -143/571 Test #432: plm-reg-autores-a ..................... Passed 1.47 sec +135/571 Test #432: plm-reg-autores-a ..................... Passed 0.40 sec Start 464: plm-scale-vf-a -144/571 Test #458: plm-resample-c ........................ Passed 0.34 sec +136/571 Test #452: plm-resample-a ........................ Passed 0.22 sec Start 470: plm-thumbnail-a -145/571 Test #371: plm-bsp-regularize-numeric ............ Passed 3.71 sec +137/571 Test #455: plm-resample-b ........................ Passed 0.28 sec Start 473: plm-thumbnail-b -146/571 Test #461: plm-scale-a ........................... Passed 0.21 sec +138/571 Test #21: lung-1 ................................ Passed 3.86 sec + Start 192: plm-convert-dicom-c +139/571 Test #435: plm-reg-autores-b ..................... Passed 0.52 sec Start 476: plm-thumbnail-c -147/571 Test #464: plm-scale-vf-a ........................ Passed 0.31 sec +140/571 Test #458: plm-resample-c ........................ Passed 0.32 sec Start 479: plm-intersect -148/571 Test #470: plm-thumbnail-a ....................... Passed 0.36 sec +141/571 Test #461: plm-scale-a ........................... Passed 0.24 sec Start 482: plm-union -149/571 Test #473: plm-thumbnail-b ....................... Passed 0.35 sec +142/571 Test #405: plm-reg-multi-a ....................... Passed 0.99 sec Start 485: plm-threshold-a -150/571 Test #435: plm-reg-autores-b ..................... Passed 1.86 sec +143/571 Test #408: plm-reg-multi-b ....................... Passed 0.98 sec Start 488: plm-threshold-b -151/571 Test #476: plm-thumbnail-c ....................... Passed 0.22 sec +144/571 Test #464: plm-scale-vf-a ........................ Passed 0.24 sec Start 491: plm-threshold-c -152/571 Test #485: plm-threshold-a ....................... Passed 0.20 sec +145/571 Test #470: plm-thumbnail-a ....................... Passed 0.22 sec Start 497: plm-warp-a -153/571 Test #482: plm-union ............................. Passed 0.23 sec +146/571 Test #473: plm-thumbnail-b ....................... Passed 0.20 sec Start 500: plm-warp-b -154/571 Test #479: plm-intersect ......................... Passed 0.24 sec +147/571 Test #476: plm-thumbnail-c ....................... Passed 0.17 sec Start 505: plm-warp-c -155/571 Test #488: plm-threshold-b ....................... Passed 0.20 sec +148/571 Test #482: plm-union ............................. Passed 0.18 sec Start 508: plm-warp-d -156/571 Test #491: plm-threshold-c ....................... Passed 0.21 sec +149/571 Test #479: plm-intersect ......................... Passed 0.20 sec Start 511: plm-warp-f -157/571 Test #508: plm-warp-d ............................ Passed 0.36 sec +150/571 Test #485: plm-threshold-a ....................... Passed 0.18 sec Start 514: plm-warp-g -158/571 Test #500: plm-warp-b ............................ Passed 0.42 sec +151/571 Test #488: plm-threshold-b ....................... Passed 0.19 sec Start 517: plm-warp-h -159/571 Test #511: plm-warp-f ............................ Passed 0.32 sec +152/571 Test #491: plm-threshold-c ....................... Passed 0.20 sec Start 520: plm-warp-i -160/571 Test #497: plm-warp-a ............................ Passed 0.45 sec +153/571 Test #500: plm-warp-b ............................ Passed 0.23 sec Start 523: plm-xf-convert-a -161/571 Test #505: plm-warp-c ............................ Passed 0.54 sec +154/571 Test #192: plm-convert-dicom-c ................... Passed 0.44 sec Start 527: plm-xf-convert-d-warp-1 -162/571 Test #523: plm-xf-convert-a ...................... Passed 0.17 sec +155/571 Test #511: plm-warp-f ............................ Passed 0.20 sec Start 530: plm-xf-convert-d-warp-2 -163/571 Test #514: plm-warp-g ............................ Passed 0.23 sec +156/571 Test #497: plm-warp-a ............................ Passed 0.32 sec Start 536: plm-xf-convert-h -164/571 Test #517: plm-warp-h ............................ Passed 0.31 sec +157/571 Test #508: plm-warp-d ............................ Passed 0.23 sec Start 539: xf-invert-vf-zero-1 -165/571 Test #527: plm-xf-convert-d-warp-1 ............... Passed 0.24 sec +158/571 Test #514: plm-warp-g ............................ Passed 0.22 sec Start 542: xf-invert-vf-trans-1 -166/571 Test #520: plm-warp-i ............................ Passed 0.36 sec +159/571 Test #517: plm-warp-h ............................ Passed 0.20 sec Start 549: proton-dose-1 -167/571 Test #536: plm-xf-convert-h ...................... Passed 0.26 sec +160/571 Test #22: lung-2 ................................ Passed 4.02 sec Start 552: proton-dose-4a -168/571 Test #530: plm-xf-convert-d-warp-2 ............... Passed 0.57 sec +161/571 Test #505: plm-warp-c ............................ Passed 0.35 sec Start 555: proton-dose-4d -169/571 Test #542: xf-invert-vf-trans-1 .................. Passed 0.82 sec +162/571 Test #523: plm-xf-convert-a ...................... Passed 0.14 sec Start 558: proton-dose-5a -170/571 Test #539: xf-invert-vf-zero-1 ................... Passed 0.90 sec +163/571 Test #520: plm-warp-i ............................ Passed 0.24 sec Start 561: proton-dose-5d -171/571 Test #549: proton-dose-1 ......................... Passed 2.73 sec +164/571 Test #527: plm-xf-convert-d-warp-1 ............... Passed 0.21 sec Start 564: proton-dose-6a -172/571 Test #552: proton-dose-4a ........................ Passed 5.00 sec +165/571 Test #536: plm-xf-convert-h ...................... Passed 0.20 sec Start 38: rect-10 -173/571 Test #38: rect-10 ............................... Passed 0.35 sec +166/571 Test #542: xf-invert-vf-trans-1 .................. Passed 0.23 sec Start 41: rect-11 -174/571 Test #41: rect-11 ............................... Passed 0.42 sec +167/571 Test #539: xf-invert-vf-zero-1 ................... Passed 0.31 sec Start 50: rect-19 -175/571 Test #50: rect-19 ............................... Passed 0.20 sec +168/571 Test #38: rect-10 ............................... Passed 0.15 sec Start 52: rectarr-01 -176/571 Test #52: rectarr-01 ............................ Passed 0.29 sec +169/571 Test #530: plm-xf-convert-d-warp-2 ............... Passed 0.39 sec Start 53: rectarr-02 -177/571 Test #53: rectarr-02 ............................ Passed 0.26 sec +170/571 Test #41: rect-11 ............................... Passed 0.14 sec Start 54: rectarr-m-01 -178/571 Test #555: proton-dose-4d ........................ Passed 6.26 sec +171/571 Test #50: rect-19 ............................... Passed 0.14 sec Start 55: rectarr-m-02 -179/571 Test #54: rectarr-m-01 .......................... Passed 0.27 sec +172/571 Test #54: rectarr-m-01 .......................... Passed 0.15 sec Start 60: roi-1 -180/571 Test #55: rectarr-m-02 .......................... Passed 0.26 sec +173/571 Test #371: plm-bsp-regularize-numeric ............ Passed 2.57 sec Start 64: sphere-4 -181/571 Test #423: plm-reg-trans-a ....................... Passed 10.24 sec +174/571 Test #52: rectarr-01 ............................ Passed 0.20 sec Start 76: vf-zero-stats -182/571 Test #60: roi-1 ................................. Passed 0.18 sec +175/571 Test #53: rectarr-02 ............................ Passed 0.19 sec Start 78: vf-trans-1-stats -183/571 Test #76: vf-zero-stats ......................... Passed 0.24 sec +176/571 Test #423: plm-reg-trans-a ....................... Passed 1.63 sec Start 80: vf-trans-2-stats -184/571 Test #78: vf-trans-1-stats ...................... Passed 0.23 sec +177/571 Test #55: rectarr-m-02 .......................... Passed 0.18 sec Start 82: vf-radial-1-stats -185/571 Test #64: sphere-4 .............................. Passed 0.39 sec +178/571 Test #60: roi-1 ................................. Passed 0.13 sec Start 84: plm-compare-a -186/571 Test #80: vf-trans-2-stats ...................... Passed 0.20 sec +179/571 Test #426: plm-reg-trans-b ....................... Passed 1.69 sec Start 86: plm-compare-b -187/571 Test #82: vf-radial-1-stats ..................... Passed 0.31 sec +180/571 Test #64: sphere-4 .............................. Passed 0.14 sec Start 88: plm-compare-c -188/571 Test #84: plm-compare-a ......................... Passed 0.28 sec +181/571 Test #78: vf-trans-1-stats ...................... Passed 0.16 sec Start 91: plm-diff-a-stats -189/571 Test #558: proton-dose-5a ........................ Passed 6.98 sec +182/571 Test #76: vf-zero-stats ......................... Passed 0.18 sec Start 94: plm-diff-b-stats -190/571 Test #426: plm-reg-trans-b ....................... Passed 10.78 sec +183/571 Test #80: vf-trans-2-stats ...................... Passed 0.20 sec Start 96: demons-a -191/571 Test #86: plm-compare-b ......................... Passed 0.23 sec +184/571 Test #82: vf-radial-1-stats ..................... Passed 0.19 sec Start 99: drr-a-stats -192/571 Test #88: plm-compare-c ......................... Passed 0.25 sec +185/571 Test #91: plm-diff-a-stats ...................... Passed 0.13 sec Start 102: drr-b-stats -193/571 Test #91: plm-diff-a-stats ...................... Passed 0.26 sec +186/571 Test #86: plm-compare-b ......................... Passed 0.17 sec Start 105: drr-c-stats -194/571 Test #94: plm-diff-b-stats ...................... Passed 0.23 sec +187/571 Test #84: plm-compare-a ......................... Passed 0.19 sec Start 108: fdk-cpu-a-stats -195/571 Test #99: drr-a-stats ........................... Passed 0.18 sec - Start 111: fdk-cpu-d-stats -196/571 Test #102: drr-b-stats ........................... Passed 0.17 sec +188/571 Test #88: plm-compare-c ......................... Passed 0.19 sec Start 114: landmark-warp-a-stats-1 -197/571 Test #105: drr-c-stats ........................... Passed 0.17 sec +189/571 Test #94: plm-diff-b-stats ...................... Passed 0.18 sec Start 116: landmark-warp-a-stats-2 -198/571 Test #108: fdk-cpu-a-stats ....................... Passed 0.30 sec +190/571 Test #99: drr-a-stats ........................... Passed 0.10 sec Start 119: landmark-warp-b-stats-1 -199/571 Test #564: proton-dose-6a ........................ Passed 5.61 sec +191/571 Test #102: drr-b-stats ........................... Passed 0.12 sec Start 121: landmark-warp-b-stats-2 -200/571 Test #114: landmark-warp-a-stats-1 ............... Passed 0.23 sec +192/571 Test #105: drr-c-stats ........................... Passed 0.13 sec Start 124: landmark-warp-c-stats-1 -201/571 Test #111: fdk-cpu-d-stats ....................... Passed 0.29 sec +193/571 Test #114: landmark-warp-a-stats-1 ............... Passed 0.13 sec Start 126: landmark-warp-c-stats-2 -202/571 Test #116: landmark-warp-a-stats-2 ............... Passed 0.24 sec +194/571 Test #119: landmark-warp-b-stats-1 ............... Passed 0.13 sec Start 130: plm-add-a-stats -203/571 Test #121: landmark-warp-b-stats-2 ............... Passed 0.22 sec +195/571 Test #110: fdk-cpu-d ............................. Passed 4.68 sec + Start 111: fdk-cpu-d-stats +196/571 Test #116: landmark-warp-a-stats-2 ............... Passed 0.19 sec Start 133: plm-add-b-stats -204/571 Test #119: landmark-warp-b-stats-1 ............... Passed 0.36 sec +197/571 Test #108: fdk-cpu-a-stats ....................... Passed 0.26 sec Start 136: plm-add-vf-a-stats -205/571 Test #124: landmark-warp-c-stats-1 ............... Passed 0.41 sec +198/571 Test #121: landmark-warp-b-stats-2 ............... Passed 0.19 sec Start 139: plm-add-vf-b-stats -206/571 Test #126: landmark-warp-c-stats-2 ............... Passed 0.51 sec +199/571 Test #124: landmark-warp-c-stats-1 ............... Passed 0.18 sec Start 142: plm-adjust-a-stats -207/571 Test #130: plm-add-a-stats ....................... Passed 0.59 sec +200/571 Test #126: landmark-warp-c-stats-2 ............... Passed 0.15 sec Start 145: plm-adjust-b-stats -208/571 Test #133: plm-add-b-stats ....................... Passed 0.33 sec +201/571 Test #130: plm-add-a-stats ....................... Passed 0.16 sec Start 148: plm-adjust-c-stats -209/571 Test #136: plm-add-vf-a-stats .................... Passed 0.22 sec +202/571 Test #111: fdk-cpu-d-stats ....................... Passed 0.20 sec Start 151: plm-adjust-d-stats -210/571 Test #96: demons-a .............................. Passed 1.22 sec +203/571 Test #133: plm-add-b-stats ....................... Passed 0.19 sec Start 154: plm-adjust-e-stats -211/571 Test #139: plm-add-vf-b-stats .................... Passed 0.23 sec +204/571 Test #136: plm-add-vf-a-stats .................... Passed 0.17 sec Start 157: plm-adjust-f-stats -212/571 Test #561: proton-dose-5d ........................ Passed 8.38 sec +205/571 Test #96: demons-a .............................. Passed 0.52 sec Start 160: plm-adjust-g-stats -213/571 Test #142: plm-adjust-a-stats .................... Passed 0.21 sec +206/571 Test #139: plm-add-vf-b-stats .................... Passed 0.18 sec Start 163: plm-adjust-h-stats -214/571 Test #145: plm-adjust-b-stats .................... Passed 0.23 sec +207/571 Test #142: plm-adjust-a-stats .................... Passed 0.18 sec Start 166: plm-adjust-i-stats -215/571 Test #154: plm-adjust-e-stats .................... Passed 0.23 sec +208/571 Test #145: plm-adjust-b-stats .................... Passed 0.18 sec Start 169: plm-adjust-j-stats -216/571 Test #151: plm-adjust-d-stats .................... Passed 0.34 sec +209/571 Test #148: plm-adjust-c-stats .................... Passed 0.19 sec Start 172: plm-boundary-a-stats -217/571 Test #148: plm-adjust-c-stats .................... Passed 0.41 sec +210/571 Test #163: plm-adjust-h-stats .................... Passed 0.12 sec Start 175: plm-boundary-b-stats -218/571 Test #157: plm-adjust-f-stats .................... Passed 0.28 sec +211/571 Test #151: plm-adjust-d-stats .................... Passed 0.19 sec Start 178: plm-boundary-c-stats -219/571 Test #163: plm-adjust-h-stats .................... Passed 0.22 sec +212/571 Test #166: plm-adjust-i-stats .................... Passed 0.13 sec Start 181: plm-boundary-d-stats -220/571 Test #160: plm-adjust-g-stats .................... Passed 0.25 sec +213/571 Test #157: plm-adjust-f-stats .................... Passed 0.18 sec Start 184: plm-boundary-e-stats -221/571 Test #169: plm-adjust-j-stats .................... Passed 0.22 sec +214/571 Test #154: plm-adjust-e-stats .................... Passed 0.20 sec Start 187: plm-convert-dicom-a-stats -222/571 Test #166: plm-adjust-i-stats .................... Passed 0.25 sec +215/571 Test #160: plm-adjust-g-stats .................... Passed 0.19 sec Start 190: plm-convert-dicom-b-stats -223/571 Test #190: plm-convert-dicom-b-stats ............. Passed 0.14 sec +216/571 Test #169: plm-adjust-j-stats .................... Passed 0.16 sec Start 193: plm-convert-dicom-c-stats -224/571 Test #172: plm-boundary-a-stats .................. Passed 0.29 sec +217/571 Test #549: proton-dose-1 ......................... Passed 1.55 sec Start 199: plm-convert-dicom-donut-a-stats -225/571 Test #175: plm-boundary-b-stats .................. Passed 0.28 sec +218/571 Test #172: plm-boundary-a-stats .................. Passed 0.17 sec Start 202: plm-convert-dicom-donut-b-stats -226/571 Test #178: plm-boundary-c-stats .................. Passed 0.28 sec +219/571 Test #190: plm-convert-dicom-b-stats ............. Passed 0.08 sec Start 206: plm-convert-cxt-stats -227/571 Test #181: plm-boundary-d-stats .................. Passed 0.28 sec +220/571 Test #181: plm-boundary-d-stats .................. Passed 0.13 sec Start 208: plm-convert-prefix-fcsv -228/571 Test #184: plm-boundary-e-stats .................. Passed 0.28 sec +221/571 Test #184: plm-boundary-e-stats .................. Passed 0.17 sec Start 210: plm-convert-dose-scale-stats -229/571 Test #187: plm-convert-dicom-a-stats ............. Passed 0.27 sec +222/571 Test #175: plm-boundary-b-stats .................. Passed 0.20 sec Start 213: plm-crop-a-stats -230/571 Test #210: plm-convert-dose-scale-stats .......... Passed 0.20 sec +223/571 Test #178: plm-boundary-c-stats .................. Passed 0.20 sec Start 216: plm-crop-b-stats -231/571 Test #199: plm-convert-dicom-donut-a-stats ....... Passed 0.23 sec +224/571 Test #202: plm-convert-dicom-donut-b-stats ....... Passed 0.13 sec Start 219: plm-crop-c-stats -232/571 Test #193: plm-convert-dicom-c-stats ............. Passed 0.26 sec +225/571 Test #187: plm-convert-dicom-a-stats ............. Passed 0.22 sec Start 221: plm-dice-a -233/571 Test #202: plm-convert-dicom-donut-b-stats ....... Passed 0.37 sec +226/571 Test #193: plm-convert-dicom-c-stats ............. Passed 0.21 sec Start 223: plm-dice-b -234/571 Test #206: plm-convert-cxt-stats ................. Passed 0.42 sec +227/571 Test #199: plm-convert-dicom-donut-a-stats ....... Passed 0.18 sec Start 225: plm-dice-c -235/571 Test #213: plm-crop-a-stats ...................... Passed 0.39 sec +228/571 Test #206: plm-convert-cxt-stats ................. Passed 0.21 sec Start 231: plm-dice-d -236/571 Test #216: plm-crop-b-stats ...................... Passed 0.23 sec +229/571 Test #213: plm-crop-a-stats ...................... Passed 0.18 sec Start 237: plm-dice-e -237/571 Test #208: plm-convert-prefix-fcsv ............... Passed 0.43 sec +230/571 Test #221: plm-dice-a ............................ Passed 0.13 sec Start 240: plm-dice-f -238/571 Test #219: plm-crop-c-stats ...................... Passed 0.23 sec +231/571 Test #219: plm-crop-c-stats ...................... Passed 0.14 sec Start 244: plm-dmap-b -239/571 Test #221: plm-dice-a ............................ Passed 0.22 sec +232/571 Test #210: plm-convert-dose-scale-stats .......... Passed 0.20 sec Start 246: plm-dvh-a -240/571 Test #225: plm-dice-c ............................ Passed 0.31 sec +233/571 Test #216: plm-crop-b-stats ...................... Passed 0.20 sec Start 249: plm-dvh-b -241/571 Test #231: plm-dice-d ............................ Passed 0.39 sec +234/571 Test #223: plm-dice-b ............................ Passed 0.17 sec Start 253: plm-fill-a-stats -242/571 Test #240: plm-dice-f ............................ Passed 0.39 sec +235/571 Test #225: plm-dice-c ............................ Passed 0.15 sec Start 256: plm-mask-a-stats -243/571 Test #223: plm-dice-b ............................ Passed 0.41 sec +236/571 Test #208: plm-convert-prefix-fcsv ............... Passed 0.33 sec Start 259: plm-gamma-a-stats -244/571 Test #237: plm-dice-e ............................ Passed 0.40 sec +237/571 Test #231: plm-dice-d ............................ Passed 0.15 sec Start 262: plm-gamma-b-stats -245/571 Test #244: plm-dmap-b ............................ Passed 0.38 sec +238/571 Test #240: plm-dice-f ............................ Passed 0.18 sec Start 264: plm-gamma-c -246/571 Test #246: plm-dvh-a ............................. Passed 0.26 sec +239/571 Test #249: plm-dvh-b ............................. Passed 0.19 sec Start 266: plm-gamma-d -247/571 Test #259: plm-gamma-a-stats ..................... Passed 0.21 sec +240/571 Test #237: plm-dice-e ............................ Passed 0.22 sec Start 269: plm-maximum-a-stats -248/571 Test #262: plm-gamma-b-stats ..................... Passed 0.21 sec +241/571 Test #253: plm-fill-a-stats ...................... Passed 0.17 sec Start 272: plm-multiply-a-stats -249/571 Test #249: plm-dvh-b ............................. Passed 0.24 sec +242/571 Test #244: plm-dmap-b ............................ Passed 0.21 sec Start 275: plm-multiply-vf-a-stats -250/571 Test #253: plm-fill-a-stats ...................... Passed 0.42 sec +243/571 Test #246: plm-dvh-a ............................. Passed 0.21 sec Start 279: plm-reg-align-center-stats -251/571 Test #256: plm-mask-a-stats ...................... Passed 0.45 sec +244/571 Test #256: plm-mask-a-stats ...................... Passed 0.17 sec Start 282: plm-reg-itk-translation-stats -252/571 Test #264: plm-gamma-c ........................... Passed 0.44 sec +245/571 Test #262: plm-gamma-b-stats ..................... Passed 0.18 sec Start 285: plm-reg-itk-rigid-a-stats-1 -253/571 Test #266: plm-gamma-d ........................... Passed 0.30 sec +246/571 Test #259: plm-gamma-a-stats ..................... Passed 0.18 sec Start 287: plm-reg-itk-rigid-a-stats-2 -254/571 Test #269: plm-maximum-a-stats ................... Passed 0.26 sec +247/571 Test #269: plm-maximum-a-stats ................... Passed 0.14 sec Start 290: plm-reg-itk-similarity-stats-1 -255/571 Test #275: plm-multiply-vf-a-stats ............... Passed 0.25 sec +248/571 Test #266: plm-gamma-d ........................... Passed 0.18 sec Start 292: plm-reg-itk-similarity-stats-2 -256/571 Test #272: plm-multiply-a-stats .................. Passed 0.30 sec +249/571 Test #279: plm-reg-align-center-stats ............ Passed 0.18 sec Start 295: plm-reg-itk-bspline-stats-1 -257/571 Test #279: plm-reg-align-center-stats ............ Passed 0.22 sec +250/571 Test #282: plm-reg-itk-translation-stats ......... Passed 0.18 sec Start 299: plm-reg-itk-demons-stats-2 -258/571 Test #285: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.21 sec +251/571 Test #272: plm-multiply-a-stats .................. Passed 0.20 sec Start 301: plm-reg-itk-demons-diff -259/571 Test #292: plm-reg-itk-similarity-stats-2 ........ Passed 0.22 sec +252/571 Test #275: plm-multiply-vf-a-stats ............... Passed 0.20 sec Start 303: plm-reg-itk-demons-logd -260/571 Test #282: plm-reg-itk-translation-stats ......... Passed 0.28 sec +253/571 Test #287: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.17 sec Start 305: plm-reg-itk-demons-sym-logd -261/571 Test #287: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.28 sec +254/571 Test #264: plm-gamma-c ........................... Passed 0.27 sec Start 308: plm-bsp-mse-c-stats -262/571 Test #290: plm-reg-itk-similarity-stats-1 ........ Passed 0.30 sec +255/571 Test #285: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.19 sec Start 311: plm-bsp-mse-g-stats -263/571 Test #295: plm-reg-itk-bspline-stats-1 ........... Passed 0.27 sec +256/571 Test #290: plm-reg-itk-similarity-stats-1 ........ Passed 0.16 sec Start 314: plm-bsp-mse-h-stats -264/571 Test #299: plm-reg-itk-demons-stats-2 ............ Passed 0.23 sec +257/571 Test #295: plm-reg-itk-bspline-stats-1 ........... Passed 0.14 sec Start 317: plm-bsp-mse-i-stats -265/571 Test #308: plm-bsp-mse-c-stats ................... Passed 0.24 sec +258/571 Test #292: plm-reg-itk-similarity-stats-2 ........ Passed 0.17 sec Start 320: plm-bsp-mse-k-stats -266/571 Test #311: plm-bsp-mse-g-stats ................... Passed 0.24 sec +259/571 Test #299: plm-reg-itk-demons-stats-2 ............ Passed 0.18 sec Start 323: plm-bsp-mse-l-stats -267/571 Test #314: plm-bsp-mse-h-stats ................... Passed 0.25 sec +260/571 Test #308: plm-bsp-mse-c-stats ................... Passed 0.18 sec Start 325: plm-bsp-mse-o -268/571 Test #317: plm-bsp-mse-i-stats ................... Passed 0.25 sec +261/571 Test #311: plm-bsp-mse-g-stats ................... Passed 0.18 sec Start 327: plm-bsp-mse-p -269/571 Test #320: plm-bsp-mse-k-stats ................... Passed 0.34 sec +262/571 Test #314: plm-bsp-mse-h-stats ................... Passed 0.19 sec Start 329: plm-bsp-mse-q -270/571 Test #323: plm-bsp-mse-l-stats ................... Passed 0.45 sec +263/571 Test #317: plm-bsp-mse-i-stats ................... Passed 0.19 sec Start 331: plm-bsp-mse-r -271/571 Test #329: plm-bsp-mse-q ......................... Passed 0.50 sec +264/571 Test #320: plm-bsp-mse-k-stats ................... Passed 0.19 sec Start 334: plm-bsp-mi-c-stats -272/571 Test #303: plm-reg-itk-demons-logd ............... Passed 1.27 sec +265/571 Test #323: plm-bsp-mse-l-stats ................... Passed 0.18 sec Start 337: plm-bsp-mi-c-2-stats -273/571 Test #327: plm-bsp-mse-p ......................... Passed 0.69 sec +266/571 Test #552: proton-dose-4a ........................ Passed 2.71 sec Start 340: plm-bsp-mi-k-stats -274/571 Test #325: plm-bsp-mse-o ......................... Passed 0.89 sec +267/571 Test #334: plm-bsp-mi-c-stats .................... Passed 0.20 sec Start 343: plm-bsp-gm-k-stats -275/571 Test #301: plm-reg-itk-demons-diff ............... Passed 1.42 sec +268/571 Test #325: plm-bsp-mse-o ......................... Passed 0.33 sec Start 345: plm-bsp-sm-multi-a -276/571 Test #331: plm-bsp-mse-r ......................... Passed 0.51 sec +269/571 Test #327: plm-bsp-mse-p ......................... Passed 0.39 sec Start 348: plm-bsp-openmp-stats -277/571 Test #305: plm-reg-itk-demons-sym-logd ........... Passed 1.44 sec +270/571 Test #337: plm-bsp-mi-c-2-stats .................. Passed 0.26 sec Start 350: plm-bsp-resume -278/571 Test #334: plm-bsp-mi-c-stats .................... Passed 0.26 sec +271/571 Test #329: plm-bsp-mse-q ......................... Passed 0.34 sec Start 352: plm-bsp-logfile -279/571 Test #337: plm-bsp-mi-c-2-stats .................. Passed 0.26 sec +272/571 Test #331: plm-bsp-mse-r ......................... Passed 0.37 sec Start 355: plm-bsp-ushort-stats -280/571 Test #340: plm-bsp-mi-k-stats .................... Passed 0.24 sec +273/571 Test #340: plm-bsp-mi-k-stats .................... Passed 0.23 sec Start 358: plm-bsp-double-stats -281/571 Test #343: plm-bsp-gm-k-stats .................... Passed 0.25 sec +274/571 Test #343: plm-bsp-gm-k-stats .................... Passed 0.22 sec Start 362: plm-bsp-char-output-stats -282/571 Test #348: plm-bsp-openmp-stats .................. Passed 0.23 sec +275/571 Test #348: plm-bsp-openmp-stats .................. Passed 0.20 sec Start 364: plm-bsp-rect -283/571 Test #355: plm-bsp-ushort-stats .................. Passed 0.23 sec +276/571 Test #303: plm-reg-itk-demons-logd ............... Passed 0.81 sec Start 366: plm-bsp-regularize-none-stats -284/571 Test #358: plm-bsp-double-stats .................. Passed 0.24 sec +277/571 Test #355: plm-bsp-ushort-stats .................. Passed 0.22 sec Start 369: plm-bsp-regularize-analytic-stats -285/571 Test #362: plm-bsp-char-output-stats ............. Passed 0.28 sec +278/571 Test #358: plm-bsp-double-stats .................. Passed 0.22 sec Start 372: plm-bsp-regularize-numeric-stats -286/571 Test #352: plm-bsp-logfile ....................... Passed 0.62 sec +279/571 Test #429: plm-reg-trans-mi-a .................... Passed 4.22 sec Start 376: plm-bsp-landmark-b-stats -287/571 Test #366: plm-bsp-regularize-none-stats ......... Passed 0.39 sec +280/571 Test #345: plm-bsp-sm-multi-a .................... Passed 0.42 sec Start 379: plm-bsp-landmark-c-stats -288/571 Test #369: plm-bsp-regularize-analytic-stats ..... Passed 0.38 sec +281/571 Test #362: plm-bsp-char-output-stats ............. Passed 0.21 sec Start 382: plm-bsp-landmark-d-stats -289/571 Test #345: plm-bsp-sm-multi-a .................... Passed 0.80 sec +282/571 Test #350: plm-bsp-resume ........................ Passed 0.35 sec Start 385: plm-bsp-landmark-e-stats -290/571 Test #372: plm-bsp-regularize-numeric-stats ...... Passed 0.33 sec +283/571 Test #366: plm-bsp-regularize-none-stats ......... Passed 0.22 sec Start 388: plm-bsp-dcos-a-stats -291/571 Test #350: plm-bsp-resume ........................ Passed 0.76 sec +284/571 Test #301: plm-reg-itk-demons-diff ............... Passed 1.05 sec Start 391: plm-bsp-dcos-b-stats -292/571 Test #382: plm-bsp-landmark-d-stats .............. Passed 0.21 sec +285/571 Test #352: plm-bsp-logfile ....................... Passed 0.42 sec Start 394: plm-bsp-dcos-c-stats -293/571 Test #376: plm-bsp-landmark-b-stats .............. Passed 0.31 sec +286/571 Test #369: plm-bsp-regularize-analytic-stats ..... Passed 0.21 sec Start 397: plm-bsp-dcos-d-stats -294/571 Test #379: plm-bsp-landmark-c-stats .............. Passed 0.30 sec +287/571 Test #372: plm-bsp-regularize-numeric-stats ...... Passed 0.19 sec Start 400: plm-bsp-dcos-e-stats -295/571 Test #391: plm-bsp-dcos-b-stats .................. Passed 0.24 sec +288/571 Test #382: plm-bsp-landmark-d-stats .............. Passed 0.18 sec Start 403: plm-bsp-dcos-f-stats -296/571 Test #364: plm-bsp-rect .......................... Passed 0.84 sec +289/571 Test #379: plm-bsp-landmark-c-stats .............. Passed 0.19 sec Start 406: plm-reg-multi-a-stats -297/571 Test #385: plm-bsp-landmark-e-stats .............. Passed 0.32 sec +290/571 Test #376: plm-bsp-landmark-b-stats .............. Passed 0.21 sec Start 409: plm-reg-multi-b-stats -298/571 Test #388: plm-bsp-dcos-a-stats .................. Passed 0.30 sec +291/571 Test #385: plm-bsp-landmark-e-stats .............. Passed 0.20 sec Start 412: plm-reg-dv-itk-translation-stats -299/571 Test #397: plm-bsp-dcos-d-stats .................. Passed 0.22 sec +292/571 Test #364: plm-bsp-rect .......................... Passed 0.39 sec Start 421: plm-reg-process-a-stats -300/571 Test #394: plm-bsp-dcos-c-stats .................. Passed 0.23 sec +293/571 Test #388: plm-bsp-dcos-a-stats .................. Passed 0.17 sec Start 424: plm-reg-trans-a-stats -301/571 Test #400: plm-bsp-dcos-e-stats .................. Passed 0.22 sec +294/571 Test #394: plm-bsp-dcos-c-stats .................. Passed 0.19 sec Start 427: plm-reg-trans-b-stats -302/571 Test #403: plm-bsp-dcos-f-stats .................. Passed 0.24 sec +295/571 Test #391: plm-bsp-dcos-b-stats .................. Passed 0.23 sec + Start 430: plm-reg-trans-mi-a-stats +296/571 Test #397: plm-bsp-dcos-d-stats .................. Passed 0.19 sec Start 433: plm-reg-autores-a-stats -303/571 Test #409: plm-reg-multi-b-stats ................. Passed 0.21 sec +297/571 Test #305: plm-reg-itk-demons-sym-logd ........... Passed 1.28 sec Start 436: plm-reg-autores-b-stats -304/571 Test #406: plm-reg-multi-a-stats ................. Passed 0.22 sec +298/571 Test #412: plm-reg-dv-itk-translation-stats ...... Passed 0.16 sec Start 442: plm-compose-a-stats -305/571 Test #412: plm-reg-dv-itk-translation-stats ...... Passed 0.24 sec +299/571 Test #406: plm-reg-multi-a-stats ................. Passed 0.18 sec Start 446: plm-compose-b-stats -306/571 Test #421: plm-reg-process-a-stats ............... Passed 0.20 sec +300/571 Test #400: plm-bsp-dcos-e-stats .................. Passed 0.21 sec Start 450: plm-compose-c-stats -307/571 Test #427: plm-reg-trans-b-stats ................. Passed 0.22 sec +301/571 Test #403: plm-bsp-dcos-f-stats .................. Passed 0.20 sec Start 453: plm-resample-a-stats -308/571 Test #424: plm-reg-trans-a-stats ................. Passed 0.26 sec +302/571 Test #409: plm-reg-multi-b-stats ................. Passed 0.20 sec Start 456: plm-resample-b-stats -309/571 Test #433: plm-reg-autores-a-stats ............... Passed 0.23 sec +303/571 Test #424: plm-reg-trans-a-stats ................. Passed 0.17 sec Start 459: plm-resample-c-stats -310/571 Test #436: plm-reg-autores-b-stats ............... Passed 0.23 sec +304/571 Test #421: plm-reg-process-a-stats ............... Passed 0.20 sec Start 462: plm-scale-a-stats -311/571 Test #446: plm-compose-b-stats ................... Passed 0.21 sec +305/571 Test #427: plm-reg-trans-b-stats ................. Passed 0.20 sec Start 465: plm-scale-vf-a-stats -312/571 Test #442: plm-compose-a-stats ................... Passed 0.26 sec +306/571 Test #430: plm-reg-trans-mi-a-stats .............. Passed 0.18 sec Start 467: plm-sift-a -313/571 Test #450: plm-compose-c-stats ................... Passed 0.22 sec +307/571 Test #446: plm-compose-b-stats ................... Passed 0.13 sec Start 471: plm-thumbnail-a-stats -314/571 Test #456: plm-resample-b-stats .................. Passed 0.21 sec +308/571 Test #433: plm-reg-autores-a-stats ............... Passed 0.18 sec Start 474: plm-thumbnail-b-stats -315/571 Test #462: plm-scale-a-stats ..................... Passed 0.21 sec +309/571 Test #436: plm-reg-autores-b-stats ............... Passed 0.18 sec Start 477: plm-thumbnail-c-stats -316/571 Test #453: plm-resample-a-stats .................. Passed 0.26 sec +310/571 Test #450: plm-compose-c-stats ................... Passed 0.17 sec Start 480: plm-intersect-stats -317/571 Test #465: plm-scale-vf-a-stats .................. Passed 0.23 sec +311/571 Test #442: plm-compose-a-stats ................... Passed 0.18 sec Start 483: plm-union-stats -318/571 Test #459: plm-resample-c-stats .................. Passed 0.27 sec +312/571 Test #459: plm-resample-c-stats .................. Passed 0.14 sec Start 486: plm-threshold-a-stats -319/571 Test #471: plm-thumbnail-a-stats ................. Passed 0.23 sec +313/571 Test #453: plm-resample-a-stats .................. Passed 0.18 sec Start 489: plm-threshold-b-stats -320/571 Test #474: plm-thumbnail-b-stats ................. Passed 0.36 sec +314/571 Test #456: plm-resample-b-stats .................. Passed 0.18 sec Start 492: plm-threshold-c-stats -321/571 Test #477: plm-thumbnail-c-stats ................. Passed 0.48 sec +315/571 Test #462: plm-scale-a-stats ..................... Passed 0.17 sec Start 498: plm-warp-a-stats -322/571 Test #480: plm-intersect-stats ................... Passed 0.59 sec +316/571 Test #555: proton-dose-4d ........................ Passed 3.77 sec Start 501: plm-warp-b-stats-1 -323/571 Test #483: plm-union-stats ....................... Passed 0.68 sec +317/571 Test #465: plm-scale-vf-a-stats .................. Passed 0.19 sec Start 503: plm-warp-b-stats-2 -324/571 Test #486: plm-threshold-a-stats ................. Passed 0.80 sec +318/571 Test #471: plm-thumbnail-a-stats ................. Passed 0.17 sec Start 506: plm-warp-c-stats -325/571 Test #489: plm-threshold-b-stats ................. Passed 0.66 sec +319/571 Test #474: plm-thumbnail-b-stats ................. Passed 0.17 sec Start 509: plm-warp-d-stats -326/571 Test #492: plm-threshold-c-stats ................. Passed 0.60 sec +320/571 Test #477: plm-thumbnail-c-stats ................. Passed 0.18 sec Start 512: plm-warp-f-stats-1 -327/571 Test #498: plm-warp-a-stats ...................... Passed 0.49 sec +321/571 Test #483: plm-union-stats ....................... Passed 0.19 sec Start 515: plm-warp-g-stats-1 -328/571 Test #501: plm-warp-b-stats-1 .................... Passed 0.36 sec +322/571 Test #489: plm-threshold-b-stats ................. Passed 0.19 sec Start 518: plm-warp-h-stats-1 -329/571 Test #503: plm-warp-b-stats-2 .................... Passed 0.25 sec +323/571 Test #480: plm-intersect-stats ................... Passed 0.20 sec Start 521: plm-warp-i-stats-1 -330/571 Test #506: plm-warp-c-stats ...................... Passed 0.22 sec +324/571 Test #486: plm-threshold-a-stats ................. Passed 0.20 sec Start 524: plm-xf-convert-b -331/571 Test #515: plm-warp-g-stats-1 .................... Passed 0.25 sec +325/571 Test #498: plm-warp-a-stats ...................... Passed 0.19 sec Start 528: plm-xf-convert-d-warp-1-stats -332/571 Test #518: plm-warp-h-stats-1 .................... Passed 0.23 sec +326/571 Test #492: plm-threshold-c-stats ................. Passed 0.22 sec Start 531: plm-xf-convert-d-warp-2-stats -333/571 Test #521: plm-warp-i-stats-1 .................... Passed 0.23 sec +327/571 Test #501: plm-warp-b-stats-1 .................... Passed 0.18 sec Start 537: plm-xf-convert-h-stats -334/571 Test #509: plm-warp-d-stats ...................... Passed 0.32 sec +328/571 Test #503: plm-warp-b-stats-2 .................... Passed 0.16 sec Start 540: xf-invert-vf-zero-1-stats -335/571 Test #512: plm-warp-f-stats-1 .................... Passed 0.31 sec +329/571 Test #506: plm-warp-c-stats ...................... Passed 0.20 sec Start 543: xf-invert-vf-trans-1-stats -336/571 Test #524: plm-xf-convert-b ...................... Passed 0.17 sec +330/571 Test #512: plm-warp-f-stats-1 .................... Passed 0.19 sec Start 545: xf-invert-vrs-a -337/571 Test #528: plm-xf-convert-d-warp-1-stats ......... Passed 0.32 sec +331/571 Test #509: plm-warp-d-stats ...................... Passed 0.20 sec Start 547: xf-invert-vrs-b -338/571 Test #540: xf-invert-vf-zero-1-stats ............. Passed 0.37 sec +332/571 Test #524: plm-xf-convert-b ...................... Passed 0.14 sec Start 550: proton-dose-1-stats -339/571 Test #543: xf-invert-vf-trans-1-stats ............ Passed 0.37 sec +333/571 Test #515: plm-warp-g-stats-1 .................... Passed 0.18 sec Start 553: proton-dose-4a-stats -340/571 Test #537: plm-xf-convert-h-stats ................ Passed 0.43 sec +334/571 Test #518: plm-warp-h-stats-1 .................... Passed 0.18 sec Start 556: proton-dose-4d-stats -341/571 Test #531: plm-xf-convert-d-warp-2-stats ......... Passed 0.44 sec - Start 559: proton-dose-5a-stats -342/571 Test #545: xf-invert-vrs-a ....................... Passed 0.17 sec - Start 562: proton-dose-5d-stats -343/571 Test #547: xf-invert-vrs-b ....................... Passed 0.17 sec +335/571 Test #564: proton-dose-6a ........................ Passed 3.97 sec Start 565: proton-dose-6a-stats -344/571 Test #550: proton-dose-1-stats ................... Passed 0.22 sec - Start 567: proton-dose-8d -345/571 Test #559: proton-dose-5a-stats .................. Passed 0.25 sec +336/571 Test #521: plm-warp-i-stats-1 .................... Passed 0.19 sec Start 569: wed-a -346/571 Test #562: proton-dose-5d-stats .................. Passed 0.24 sec +337/571 Test #528: plm-xf-convert-d-warp-1-stats ......... Passed 0.15 sec Start 16: gauss-7 -347/571 Test #553: proton-dose-4a-stats .................. Passed 0.42 sec +338/571 Test #531: plm-xf-convert-d-warp-2-stats ......... Passed 0.15 sec Start 23: gw-lung-a -348/571 Test #556: proton-dose-4d-stats .................. Passed 0.52 sec +339/571 Test #537: plm-xf-convert-h-stats ................ Passed 0.20 sec Start 24: gw-lung-b -349/571 Test #565: proton-dose-6a-stats .................. Passed 0.36 sec +340/571 Test #545: xf-invert-vrs-a ....................... Passed 0.12 sec Start 25: gw-lung-c -350/571 Test #16: gauss-7 ............................... Passed 0.20 sec +341/571 Test #540: xf-invert-vf-zero-1-stats ............. Passed 0.19 sec Start 34: rect-6 -351/571 Test #34: rect-6 ................................ Passed 0.31 sec +342/571 Test #547: xf-invert-vrs-b ....................... Passed 0.14 sec Start 35: rect-7 -352/571 Test #35: rect-7 ................................ Passed 0.24 sec +343/571 Test #558: proton-dose-5a ........................ Passed 4.19 sec + Start 559: proton-dose-5a-stats +344/571 Test #550: proton-dose-1-stats ................... Passed 0.17 sec Start 40: rect-10-roi-2 -353/571 Test #40: rect-10-roi-2 ......................... Passed 0.23 sec +345/571 Test #543: xf-invert-vf-trans-1-stats ............ Passed 0.19 sec Start 49: rect-18 -354/571 Test #567: proton-dose-8d ........................ Passed 1.30 sec +346/571 Test #16: gauss-7 ............................... Passed 0.14 sec Start 59: rgc-1 -355/571 Test #25: gw-lung-c ............................. Passed 1.06 sec +347/571 Test #556: proton-dose-4d-stats .................. Passed 0.18 sec Start 68: xramp-1 -356/571 Test #49: rect-18 ............................... Passed 0.18 sec +348/571 Test #553: proton-dose-4a-stats .................. Passed 0.21 sec Start 69: yramp-1 -357/571 Test #23: gw-lung-a ............................. Passed 1.15 sec +349/571 Test #565: proton-dose-6a-stats .................. Passed 0.21 sec Start 70: zramp-1 -358/571 Test #24: gw-lung-b ............................. Passed 1.17 sec +350/571 Test #23: gw-lung-a ............................. Passed 0.20 sec Start 75: vf-gaussian-1 -359/571 Test #59: rgc-1 ................................. Passed 0.18 sec +351/571 Test #34: rect-6 ................................ Passed 0.15 sec Start 77: vf-zero-check -360/571 Test #68: xramp-1 ............................... Passed 0.22 sec +352/571 Test #35: rect-7 ................................ Passed 0.14 sec Start 79: vf-trans-1-check -361/571 Test #69: yramp-1 ............................... Passed 0.19 sec +353/571 Test #24: gw-lung-b ............................. Passed 0.18 sec Start 81: vf-trans-2-check -362/571 Test #77: vf-zero-check ......................... Passed 0.03 sec +354/571 Test #77: vf-zero-check ......................... Passed 0.02 sec Start 83: vf-radial-1-check -363/571 Test #79: vf-trans-1-check ...................... Passed 0.02 sec +355/571 Test #40: rect-10-roi-2 ......................... Passed 0.13 sec Start 85: plm-compare-a-check -364/571 Test #70: zramp-1 ............................... Passed 0.17 sec +356/571 Test #79: vf-trans-1-check ...................... Passed 0.02 sec Start 87: plm-compare-b-check -365/571 Test #81: vf-trans-2-check ...................... Passed 0.02 sec +357/571 Test #81: vf-trans-2-check ...................... Passed 0.01 sec Start 89: plm-compare-c-check -366/571 Test #83: vf-radial-1-check ..................... Passed 0.02 sec +358/571 Test #25: gw-lung-c ............................. Passed 0.19 sec Start 92: plm-diff-a-check -367/571 Test #85: plm-compare-a-check ................... Passed 0.02 sec +359/571 Test #83: vf-radial-1-check ..................... Passed 0.02 sec Start 95: plm-diff-b-check -368/571 Test #89: plm-compare-c-check ................... Passed 0.02 sec +360/571 Test #85: plm-compare-a-check ................... Passed 0.02 sec Start 97: demons-a-check -369/571 Test #87: plm-compare-b-check ................... Passed 0.03 sec +361/571 Test #87: plm-compare-b-check ................... Passed 0.02 sec Start 100: drr-a-check -370/571 Test #92: plm-diff-a-check ...................... Passed 0.02 sec +362/571 Test #49: rect-18 ............................... Passed 0.13 sec Start 103: drr-b-check -371/571 Test #95: plm-diff-b-check ...................... Passed 0.02 sec +363/571 Test #89: plm-compare-c-check ................... Passed 0.02 sec Start 106: drr-c-check -372/571 Test #97: demons-a-check ........................ Passed 0.02 sec +364/571 Test #92: plm-diff-a-check ...................... Passed 0.01 sec Start 109: fdk-cpu-a-check -373/571 Test #103: drr-b-check ........................... Passed 0.02 sec +365/571 Test #95: plm-diff-b-check ...................... Passed 0.01 sec Start 112: fdk-cpu-d-check -374/571 Test #100: drr-a-check ........................... Passed 0.02 sec +366/571 Test #97: demons-a-check ........................ Passed 0.01 sec Start 115: landmark-warp-a-check-1 -375/571 Test #106: drr-c-check ........................... Passed 0.02 sec +367/571 Test #100: drr-a-check ........................... Passed 0.02 sec Start 117: landmark-warp-a-check-2 -376/571 Test #109: fdk-cpu-a-check ....................... Passed 0.02 sec +368/571 Test #559: proton-dose-5a-stats .................. Passed 0.17 sec Start 120: landmark-warp-b-check-1 -377/571 Test #112: fdk-cpu-d-check ....................... Passed 0.02 sec +369/571 Test #103: drr-b-check ........................... Passed 0.02 sec Start 122: landmark-warp-b-check-2 -378/571 Test #115: landmark-warp-a-check-1 ............... Passed 0.02 sec +370/571 Test #106: drr-c-check ........................... Passed 0.02 sec Start 125: landmark-warp-c-check-1 -379/571 Test #117: landmark-warp-a-check-2 ............... Passed 0.02 sec +371/571 Test #109: fdk-cpu-a-check ....................... Passed 0.02 sec Start 127: landmark-warp-c-check-2 -380/571 Test #122: landmark-warp-b-check-2 ............... Passed 0.02 sec +372/571 Test #112: fdk-cpu-d-check ....................... Passed 0.02 sec Start 128: landmark-warp-d -381/571 Test #120: landmark-warp-b-check-1 ............... Passed 0.02 sec +373/571 Test #115: landmark-warp-a-check-1 ............... Passed 0.02 sec Start 131: plm-add-a-check -382/571 Test #75: vf-gaussian-1 ......................... Passed 0.23 sec +374/571 Test #117: landmark-warp-a-check-2 ............... Passed 0.02 sec Start 134: plm-add-b-check -383/571 Test #125: landmark-warp-c-check-1 ............... Passed 0.03 sec +375/571 Test #59: rgc-1 ................................. Passed 0.16 sec Start 137: plm-add-vf-a-check -384/571 Test #127: landmark-warp-c-check-2 ............... Passed 0.02 sec +376/571 Test #120: landmark-warp-b-check-1 ............... Passed 0.02 sec Start 140: plm-add-vf-b-check -385/571 Test #131: plm-add-a-check ....................... Passed 0.02 sec +377/571 Test #68: xramp-1 ............................... Passed 0.14 sec Start 143: plm-adjust-a-check -386/571 Test #140: plm-add-vf-b-check .................... Passed 0.02 sec +378/571 Test #122: landmark-warp-b-check-2 ............... Passed 0.02 sec Start 146: plm-adjust-b-check -387/571 Test #134: plm-add-b-check ....................... Passed 0.03 sec +379/571 Test #125: landmark-warp-c-check-1 ............... Passed 0.02 sec Start 149: plm-adjust-c-check -388/571 Test #137: plm-add-vf-a-check .................... Passed 0.03 sec +380/571 Test #127: landmark-warp-c-check-2 ............... Passed 0.02 sec Start 152: plm-adjust-d-check -389/571 Test #143: plm-adjust-a-check .................... Passed 0.02 sec +381/571 Test #131: plm-add-a-check ....................... Passed 0.02 sec Start 155: plm-adjust-e-check -390/571 Test #146: plm-adjust-b-check .................... Passed 0.02 sec +382/571 Test #134: plm-add-b-check ....................... Passed 0.02 sec Start 158: plm-adjust-f-check -391/571 Test #149: plm-adjust-c-check .................... Passed 0.02 sec +383/571 Test #137: plm-add-vf-a-check .................... Passed 0.02 sec Start 161: plm-adjust-g-check -392/571 Test #152: plm-adjust-d-check .................... Passed 0.02 sec +384/571 Test #140: plm-add-vf-b-check .................... Passed 0.02 sec Start 164: plm-adjust-h-check -393/571 Test #155: plm-adjust-e-check .................... Passed 0.02 sec +385/571 Test #143: plm-adjust-a-check .................... Passed 0.02 sec Start 167: plm-adjust-i-check -394/571 Test #158: plm-adjust-f-check .................... Passed 0.02 sec +386/571 Test #146: plm-adjust-b-check .................... Passed 0.02 sec Start 170: plm-adjust-j-check -395/571 Test #161: plm-adjust-g-check .................... Passed 0.02 sec +387/571 Test #149: plm-adjust-c-check .................... Passed 0.02 sec Start 173: plm-boundary-a-check -396/571 Test #164: plm-adjust-h-check .................... Passed 0.02 sec +388/571 Test #152: plm-adjust-d-check .................... Passed 0.02 sec Start 176: plm-boundary-b-check -397/571 Test #167: plm-adjust-i-check .................... Passed 0.02 sec +389/571 Test #155: plm-adjust-e-check .................... Passed 0.02 sec Start 179: plm-boundary-c-check -398/571 Test #170: plm-adjust-j-check .................... Passed 0.02 sec +390/571 Test #158: plm-adjust-f-check .................... Passed 0.02 sec Start 182: plm-boundary-d-check -399/571 Test #173: plm-boundary-a-check .................. Passed 0.02 sec +391/571 Test #161: plm-adjust-g-check .................... Passed 0.02 sec Start 185: plm-boundary-e-check -400/571 Test #179: plm-boundary-c-check .................. Passed 0.02 sec +392/571 Test #69: yramp-1 ............................... Passed 0.15 sec Start 188: plm-convert-dicom-a-check -401/571 Test #176: plm-boundary-b-check .................. Passed 0.03 sec +393/571 Test #164: plm-adjust-h-check .................... Passed 0.02 sec Start 191: plm-convert-dicom-b-check -402/571 Test #185: plm-boundary-e-check .................. Passed 0.02 sec +394/571 Test #70: zramp-1 ............................... Passed 0.15 sec Start 194: plm-convert-dicom-c-check -403/571 Test #182: plm-boundary-d-check .................. Passed 0.02 sec +395/571 Test #167: plm-adjust-i-check .................... Passed 0.02 sec Start 195: plm-convert-dicom-d -404/571 Test #188: plm-convert-dicom-a-check ............. Passed 0.02 sec +396/571 Test #170: plm-adjust-j-check .................... Passed 0.02 sec Start 196: plm-convert-dicom-e -405/571 Test #191: plm-convert-dicom-b-check ............. Passed 0.02 sec +397/571 Test #173: plm-boundary-a-check .................. Passed 0.02 sec Start 197: plm-convert-dicom-f -406/571 Test #194: plm-convert-dicom-c-check ............. Passed 0.02 sec +398/571 Test #176: plm-boundary-b-check .................. Passed 0.02 sec Start 200: plm-convert-dicom-donut-a-check -407/571 Test #200: plm-convert-dicom-donut-a-check ....... Passed 0.02 sec +399/571 Test #179: plm-boundary-c-check .................. Passed 0.02 sec Start 203: plm-convert-dicom-donut-b-check -408/571 Test #203: plm-convert-dicom-donut-b-check ....... Passed 0.02 sec +400/571 Test #75: vf-gaussian-1 ......................... Passed 0.15 sec Start 204: plm-convert-dicom-donut-c -409/571 Test #195: plm-convert-dicom-d ................... Passed 0.19 sec +401/571 Test #182: plm-boundary-d-check .................. Passed 0.02 sec Start 207: plm-convert-cxt-check -410/571 Test #207: plm-convert-cxt-check ................. Passed 0.02 sec +402/571 Test #185: plm-boundary-e-check .................. Passed 0.02 sec Start 211: plm-convert-dose-scale-check -411/571 Test #128: landmark-warp-d ....................... Passed 0.33 sec +403/571 Test #188: plm-convert-dicom-a-check ............. Passed 0.02 sec Start 214: plm-crop-a-check-1 -412/571 Test #196: plm-convert-dicom-e ................... Passed 0.22 sec +404/571 Test #191: plm-convert-dicom-b-check ............. Passed 0.02 sec Start 217: plm-crop-b-check-1 -413/571 Test #211: plm-convert-dose-scale-check .......... Passed 0.02 sec +405/571 Test #194: plm-convert-dicom-c-check ............. Passed 0.02 sec Start 220: plm-crop-c-check-1 -414/571 Test #214: plm-crop-a-check-1 .................... Passed 0.02 sec +406/571 Test #200: plm-convert-dicom-donut-a-check ....... Passed 0.02 sec Start 222: plm-dice-a-check-1 -415/571 Test #197: plm-convert-dicom-f ................... Passed 0.24 sec +407/571 Test #203: plm-convert-dicom-donut-b-check ....... Passed 0.02 sec Start 224: plm-dice-b-check-1 -416/571 Test #217: plm-crop-b-check-1 .................... Passed 0.03 sec +408/571 Test #207: plm-convert-cxt-check ................. Passed 0.02 sec Start 226: plm-dice-c-check-1 -417/571 Test #220: plm-crop-c-check-1 .................... Passed 0.03 sec +409/571 Test #211: plm-convert-dose-scale-check .......... Passed 0.02 sec Start 227: plm-dice-c-check-2 -418/571 Test #222: plm-dice-a-check-1 .................... Passed 0.03 sec +410/571 Test #214: plm-crop-a-check-1 .................... Passed 0.02 sec Start 228: plm-dice-c-check-3 -419/571 Test #224: plm-dice-b-check-1 .................... Passed 0.02 sec +411/571 Test #217: plm-crop-b-check-1 .................... Passed 0.01 sec Start 229: plm-dice-c-check-4 -420/571 Test #228: plm-dice-c-check-3 .................... Passed 0.02 sec +412/571 Test #220: plm-crop-c-check-1 .................... Passed 0.02 sec Start 230: plm-dice-c-check-5 -421/571 Test #226: plm-dice-c-check-1 .................... Passed 0.03 sec +413/571 Test #222: plm-dice-a-check-1 .................... Passed 0.01 sec Start 232: plm-dice-d-check-1 -422/571 Test #227: plm-dice-c-check-2 .................... Passed 0.03 sec +414/571 Test #224: plm-dice-b-check-1 .................... Passed 0.01 sec Start 233: plm-dice-d-check-2 -423/571 Test #229: plm-dice-c-check-4 .................... Passed 0.02 sec +415/571 Test #226: plm-dice-c-check-1 .................... Passed 0.01 sec Start 234: plm-dice-d-check-3 -424/571 Test #230: plm-dice-c-check-5 .................... Passed 0.02 sec +416/571 Test #227: plm-dice-c-check-2 .................... Passed 0.02 sec Start 235: plm-dice-d-check-4 -425/571 Test #232: plm-dice-d-check-1 .................... Passed 0.05 sec +417/571 Test #228: plm-dice-c-check-3 .................... Passed 0.02 sec Start 236: plm-dice-d-check-5 -426/571 Test #233: plm-dice-d-check-2 .................... Passed 0.10 sec +418/571 Test #229: plm-dice-c-check-4 .................... Passed 0.02 sec Start 238: plm-dice-e-check-1 -427/571 Test #234: plm-dice-d-check-3 .................... Passed 0.10 sec +419/571 Test #232: plm-dice-d-check-1 .................... Passed 0.01 sec Start 239: plm-dice-e-check-2 -428/571 Test #235: plm-dice-d-check-4 .................... Passed 0.06 sec +420/571 Test #230: plm-dice-c-check-5 .................... Passed 0.02 sec Start 241: plm-dice-f-check-1 -429/571 Test #236: plm-dice-d-check-5 .................... Passed 0.03 sec +421/571 Test #233: plm-dice-d-check-2 .................... Passed 0.02 sec Start 242: plm-dice-f-check-2 -430/571 Test #238: plm-dice-e-check-1 .................... Passed 0.03 sec +422/571 Test #234: plm-dice-d-check-3 .................... Passed 0.02 sec Start 243: plm-dmap-a -431/571 Test #239: plm-dice-e-check-2 .................... Passed 0.03 sec +423/571 Test #235: plm-dice-d-check-4 .................... Passed 0.02 sec Start 245: plm-dmap-c -432/571 Test #241: plm-dice-f-check-1 .................... Passed 0.03 sec +424/571 Test #236: plm-dice-d-check-5 .................... Passed 0.02 sec Start 247: plm-dvh-a-check-1 -433/571 Test #242: plm-dice-f-check-2 .................... Passed 0.02 sec +425/571 Test #238: plm-dice-e-check-1 .................... Passed 0.02 sec Start 248: plm-dvh-a-check-2 -434/571 Test #247: plm-dvh-a-check-1 ..................... Passed 0.02 sec +426/571 Test #239: plm-dice-e-check-2 .................... Passed 0.02 sec Start 250: plm-dvh-b-check-1 -435/571 Test #204: plm-convert-dicom-donut-c ............. Passed 0.39 sec +427/571 Test #241: plm-dice-f-check-1 .................... Passed 0.01 sec Start 251: plm-dvh-b-check-2 -436/571 Test #248: plm-dvh-a-check-2 ..................... Passed 0.02 sec +428/571 Test #242: plm-dice-f-check-2 .................... Passed 0.01 sec Start 254: plm-fill-a-check -437/571 Test #250: plm-dvh-b-check-1 ..................... Passed 0.02 sec +429/571 Test #247: plm-dvh-a-check-1 ..................... Passed 0.01 sec Start 257: plm-mask-a-check -438/571 Test #251: plm-dvh-b-check-2 ..................... Passed 0.02 sec +430/571 Test #248: plm-dvh-a-check-2 ..................... Passed 0.02 sec Start 260: plm-gamma-a-check -439/571 Test #254: plm-fill-a-check ...................... Passed 0.02 sec +431/571 Test #250: plm-dvh-b-check-1 ..................... Passed 0.01 sec Start 263: plm-gamma-b-check -440/571 Test #257: plm-mask-a-check ...................... Passed 0.02 sec +432/571 Test #251: plm-dvh-b-check-2 ..................... Passed 0.02 sec Start 265: plm-gamma-c-check -441/571 Test #260: plm-gamma-a-check ..................... Passed 0.02 sec +433/571 Test #254: plm-fill-a-check ...................... Passed 0.02 sec Start 267: plm-gamma-d-check -442/571 Test #263: plm-gamma-b-check ..................... Passed 0.02 sec +434/571 Test #257: plm-mask-a-check ...................... Passed 0.02 sec Start 270: plm-maximum-a-check -443/571 Test #265: plm-gamma-c-check ..................... Passed 0.02 sec +435/571 Test #260: plm-gamma-a-check ..................... Passed 0.02 sec Start 273: plm-multiply-a-check -444/571 Test #267: plm-gamma-d-check ..................... Passed 0.02 sec +436/571 Test #263: plm-gamma-b-check ..................... Passed 0.02 sec Start 276: plm-multiply-vf-a-check -445/571 Test #276: plm-multiply-vf-a-check ............... Passed 0.02 sec +437/571 Test #265: plm-gamma-c-check ..................... Passed 0.02 sec Start 277: plm-usage -446/571 Test #270: plm-maximum-a-check ................... Passed 0.04 sec +438/571 Test #267: plm-gamma-d-check ..................... Passed 0.02 sec Start 280: plm-reg-align-center-check -447/571 Test #273: plm-multiply-a-check .................. Passed 0.03 sec +439/571 Test #270: plm-maximum-a-check ................... Passed 0.02 sec Start 283: plm-reg-itk-translation-check -448/571 Test #280: plm-reg-align-center-check ............ Passed 0.02 sec +440/571 Test #128: landmark-warp-d ....................... Passed 0.18 sec Start 286: plm-reg-itk-rigid-a-check-1 -449/571 Test #283: plm-reg-itk-translation-check ......... Passed 0.02 sec +441/571 Test #273: plm-multiply-a-check .................. Passed 0.02 sec Start 288: plm-reg-itk-rigid-a-check-2 -450/571 Test #288: plm-reg-itk-rigid-a-check-2 ........... Passed 0.02 sec +442/571 Test #276: plm-multiply-vf-a-check ............... Passed 0.02 sec Start 291: plm-reg-itk-similarity-check-1 -451/571 Test #286: plm-reg-itk-rigid-a-check-1 ........... Passed 0.03 sec +443/571 Test #280: plm-reg-align-center-check ............ Passed 0.02 sec Start 293: plm-reg-itk-similarity-check-2 -452/571 Test #291: plm-reg-itk-similarity-check-1 ........ Passed 0.02 sec +444/571 Test #195: plm-convert-dicom-d ................... Passed 0.13 sec Start 296: plm-reg-itk-bspline-check-1 -453/571 Test #293: plm-reg-itk-similarity-check-2 ........ Passed 0.02 sec +445/571 Test #283: plm-reg-itk-translation-check ......... Passed 0.02 sec Start 298: plm-reg-itk-demons-check-1 -454/571 Test #298: plm-reg-itk-demons-check-1 ............ Passed 0.02 sec +446/571 Test #286: plm-reg-itk-rigid-a-check-1 ........... Passed 0.02 sec Start 300: plm-reg-itk-demons-check-2 -455/571 Test #296: plm-reg-itk-bspline-check-1 ........... Passed 0.03 sec +447/571 Test #288: plm-reg-itk-rigid-a-check-2 ........... Passed 0.02 sec Start 302: plm-reg-itk-demons-diff-check-1 -456/571 Test #300: plm-reg-itk-demons-check-2 ............ Passed 0.04 sec +448/571 Test #291: plm-reg-itk-similarity-check-1 ........ Passed 0.02 sec Start 304: plm-reg-itk-demons-logd-check-1 -457/571 Test #302: plm-reg-itk-demons-diff-check-1 ....... Passed 0.05 sec +449/571 Test #293: plm-reg-itk-similarity-check-2 ........ Passed 0.01 sec Start 306: plm-reg-itk-demons-sym-logd-check-1 -458/571 Test #277: plm-usage ............................. Passed 0.17 sec +450/571 Test #296: plm-reg-itk-bspline-check-1 ........... Passed 0.01 sec Start 309: plm-bsp-mse-c-check -459/571 Test #304: plm-reg-itk-demons-logd-check-1 ....... Passed 0.05 sec +451/571 Test #298: plm-reg-itk-demons-check-1 ............ Passed 0.02 sec Start 312: plm-bsp-mse-g-check -460/571 Test #306: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.04 sec +452/571 Test #300: plm-reg-itk-demons-check-2 ............ Passed 0.01 sec Start 315: plm-bsp-mse-h-check -461/571 Test #309: plm-bsp-mse-c-check ................... Passed 0.04 sec +453/571 Test #302: plm-reg-itk-demons-diff-check-1 ....... Passed 0.01 sec Start 318: plm-bsp-mse-i-check -462/571 Test #312: plm-bsp-mse-g-check ................... Passed 0.04 sec +454/571 Test #304: plm-reg-itk-demons-logd-check-1 ....... Passed 0.01 sec Start 321: plm-bsp-mse-k-check -463/571 Test #245: plm-dmap-c ............................ Passed 0.36 sec +455/571 Test #306: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.02 sec Start 324: plm-bsp-mse-l-check -464/571 Test #315: plm-bsp-mse-h-check ................... Passed 0.05 sec +456/571 Test #309: plm-bsp-mse-c-check ................... Passed 0.02 sec Start 326: plm-bsp-mse-o-stats -465/571 Test #318: plm-bsp-mse-i-check ................... Passed 0.03 sec +457/571 Test #312: plm-bsp-mse-g-check ................... Passed 0.02 sec Start 328: plm-bsp-mse-p-stats -466/571 Test #321: plm-bsp-mse-k-check ................... Passed 0.02 sec +458/571 Test #315: plm-bsp-mse-h-check ................... Passed 0.01 sec Start 330: plm-bsp-mse-q-stats -467/571 Test #243: plm-dmap-a ............................ Passed 0.37 sec +459/571 Test #318: plm-bsp-mse-i-check ................... Passed 0.01 sec Start 332: plm-bsp-mse-r-stats -468/571 Test #324: plm-bsp-mse-l-check ................... Passed 0.02 sec +460/571 Test #321: plm-bsp-mse-k-check ................... Passed 0.01 sec Start 335: plm-bsp-mi-c-check -469/571 Test #335: plm-bsp-mi-c-check .................... Passed 0.02 sec +461/571 Test #324: plm-bsp-mse-l-check ................... Passed 0.01 sec Start 338: plm-bsp-mi-c-2-check -470/571 Test #338: plm-bsp-mi-c-2-check .................. Passed 0.02 sec +462/571 Test #197: plm-convert-dicom-f ................... Passed 0.18 sec Start 341: plm-bsp-mi-k-check -471/571 Test #341: plm-bsp-mi-k-check .................... Passed 0.02 sec +463/571 Test #335: plm-bsp-mi-c-check .................... Passed 0.02 sec Start 344: plm-bsp-gm-k-check -472/571 Test #344: plm-bsp-gm-k-check .................... Passed 0.02 sec +464/571 Test #338: plm-bsp-mi-c-2-check .................. Passed 0.02 sec Start 346: plm-bsp-sm-multi-a-stats -473/571 Test #326: plm-bsp-mse-o-stats ................... Passed 0.21 sec +465/571 Test #196: plm-convert-dicom-e ................... Passed 0.19 sec Start 349: plm-bsp-openmp-check -474/571 Test #328: plm-bsp-mse-p-stats ................... Passed 0.22 sec +466/571 Test #341: plm-bsp-mi-k-check .................... Passed 0.02 sec Start 351: plm-bsp-resume-stats -475/571 Test #330: plm-bsp-mse-q-stats ................... Passed 0.22 sec +467/571 Test #344: plm-bsp-gm-k-check .................... Passed 0.01 sec Start 353: plm-bsp-logfile-check -476/571 Test #349: plm-bsp-openmp-check .................. Passed 0.02 sec +468/571 Test #349: plm-bsp-openmp-check .................. Passed 0.02 sec Start 356: plm-bsp-ushort-check -477/571 Test #332: plm-bsp-mse-r-stats ................... Passed 0.23 sec +469/571 Test #353: plm-bsp-logfile-check ................. Passed 0.01 sec Start 359: plm-bsp-double-check -478/571 Test #356: plm-bsp-ushort-check .................. Passed 0.02 sec +470/571 Test #356: plm-bsp-ushort-check .................. Passed 0.02 sec Start 360: plm-bsp-itk-output -479/571 Test #353: plm-bsp-logfile-check ................. Passed 0.03 sec +471/571 Test #359: plm-bsp-double-check .................. Passed 0.02 sec Start 363: plm-bsp-char-output-check -480/571 Test #359: plm-bsp-double-check .................. Passed 0.02 sec +472/571 Test #277: plm-usage ............................. Passed 0.14 sec Start 367: plm-bsp-regularize-none-check -481/571 Test #363: plm-bsp-char-output-check ............. Passed 0.02 sec +473/571 Test #363: plm-bsp-char-output-check ............. Passed 0.02 sec Start 370: plm-bsp-regularize-analytic-check -482/571 Test #367: plm-bsp-regularize-none-check ......... Passed 0.02 sec +474/571 Test #367: plm-bsp-regularize-none-check ......... Passed 0.01 sec Start 373: plm-bsp-regularize-numeric-check -483/571 Test #370: plm-bsp-regularize-analytic-check ..... Passed 0.02 sec +475/571 Test #370: plm-bsp-regularize-analytic-check ..... Passed 0.02 sec Start 374: plm-bsp-landmark-a -484/571 Test #373: plm-bsp-regularize-numeric-check ...... Passed 0.02 sec +476/571 Test #373: plm-bsp-regularize-numeric-check ...... Passed 0.03 sec Start 377: plm-bsp-landmark-b-check -485/571 Test #377: plm-bsp-landmark-b-check .............. Passed 0.02 sec +477/571 Test #377: plm-bsp-landmark-b-check .............. Passed 0.02 sec Start 380: plm-bsp-landmark-c-check -486/571 Test #346: plm-bsp-sm-multi-a-stats .............. Passed 0.23 sec +478/571 Test #380: plm-bsp-landmark-c-check .............. Passed 0.02 sec Start 383: plm-bsp-landmark-d-check -487/571 Test #380: plm-bsp-landmark-c-check .............. Passed 0.03 sec +479/571 Test #245: plm-dmap-c ............................ Passed 0.27 sec Start 386: plm-bsp-landmark-e-check -488/571 Test #383: plm-bsp-landmark-d-check .............. Passed 0.02 sec +480/571 Test #243: plm-dmap-a ............................ Passed 0.27 sec Start 389: plm-bsp-dcos-a-check -489/571 Test #389: plm-bsp-dcos-a-check .................. Passed 0.02 sec +481/571 Test #383: plm-bsp-landmark-d-check .............. Passed 0.01 sec Start 392: plm-bsp-dcos-b-check -490/571 Test #386: plm-bsp-landmark-e-check .............. Passed 0.03 sec +482/571 Test #386: plm-bsp-landmark-e-check .............. Passed 0.02 sec Start 395: plm-bsp-dcos-c-check -491/571 Test #392: plm-bsp-dcos-b-check .................. Passed 0.02 sec +483/571 Test #328: plm-bsp-mse-p-stats ................... Passed 0.19 sec Start 398: plm-bsp-dcos-d-check -492/571 Test #395: plm-bsp-dcos-c-check .................. Passed 0.02 sec +484/571 Test #326: plm-bsp-mse-o-stats ................... Passed 0.19 sec Start 401: plm-bsp-dcos-e-check -493/571 Test #401: plm-bsp-dcos-e-check .................. Passed 0.02 sec +485/571 Test #389: plm-bsp-dcos-a-check .................. Passed 0.02 sec Start 404: plm-bsp-dcos-f-check -494/571 Test #398: plm-bsp-dcos-d-check .................. Passed 0.03 sec +486/571 Test #392: plm-bsp-dcos-b-check .................. Passed 0.02 sec Start 407: plm-reg-multi-a-check -495/571 Test #404: plm-bsp-dcos-f-check .................. Passed 0.02 sec +487/571 Test #395: plm-bsp-dcos-c-check .................. Passed 0.01 sec Start 410: plm-reg-multi-b-check -496/571 Test #407: plm-reg-multi-a-check ................. Passed 0.02 sec +488/571 Test #398: plm-bsp-dcos-d-check .................. Passed 0.01 sec Start 413: plm-reg-dv-itk-translation-check -497/571 Test #351: plm-bsp-resume-stats .................. Passed 0.22 sec +489/571 Test #332: plm-bsp-mse-r-stats ................... Passed 0.20 sec Start 414: plm-reg-roi-a -498/571 Test #410: plm-reg-multi-b-check ................. Passed 0.05 sec +490/571 Test #401: plm-bsp-dcos-e-check .................. Passed 0.02 sec Start 415: plm-reg-roi-b -499/571 Test #413: plm-reg-dv-itk-translation-check ...... Passed 0.05 sec +491/571 Test #346: plm-bsp-sm-multi-a-stats .............. Passed 0.18 sec Start 416: plm-reg-roi-c -500/571 Test #360: plm-bsp-itk-output .................... Passed 0.35 sec +492/571 Test #404: plm-bsp-dcos-f-check .................. Passed 0.02 sec Start 417: plm-reg-roi-d -501/571 Test #415: plm-reg-roi-b ......................... Passed 1.12 sec +493/571 Test #407: plm-reg-multi-a-check ................. Passed 0.02 sec Start 418: plm-reg-roi-e -502/571 Test #416: plm-reg-roi-c ......................... Passed 1.12 sec +494/571 Test #330: plm-bsp-mse-q-stats ................... Passed 0.21 sec Start 419: plm-reg-stiffness-a -503/571 Test #374: plm-bsp-landmark-a .................... Passed 1.55 sec +495/571 Test #351: plm-bsp-resume-stats .................. Passed 0.19 sec Start 422: plm-reg-process-a-check -504/571 Test #414: plm-reg-roi-a ......................... Passed 1.57 sec +496/571 Test #410: plm-reg-multi-b-check ................. Passed 0.03 sec Start 425: plm-reg-trans-a-check -505/571 Test #417: plm-reg-roi-d ......................... Passed 1.33 sec +497/571 Test #413: plm-reg-dv-itk-translation-check ...... Passed 0.03 sec Start 428: plm-reg-trans-b-check -506/571 Test #422: plm-reg-process-a-check ............... Passed 0.07 sec +498/571 Test #422: plm-reg-process-a-check ............... Passed 0.01 sec + Start 431: plm-reg-trans-mi-a-check +499/571 Test #204: plm-convert-dicom-donut-c ............. Passed 0.39 sec Start 434: plm-reg-autores-a-check -507/571 Test #425: plm-reg-trans-a-check ................. Passed 0.05 sec +500/571 Test #425: plm-reg-trans-a-check ................. Passed 0.02 sec Start 437: plm-reg-autores-b-check -508/571 Test #428: plm-reg-trans-b-check ................. Passed 0.05 sec +501/571 Test #428: plm-reg-trans-b-check ................. Passed 0.02 sec Start 438: plm-reg-point-dmap-a -509/571 Test #434: plm-reg-autores-a-check ............... Passed 0.06 sec +502/571 Test #431: plm-reg-trans-mi-a-check .............. Passed 0.02 sec Start 441: plm-compose-a-warp -510/571 Test #437: plm-reg-autores-b-check ............... Passed 0.06 sec +503/571 Test #434: plm-reg-autores-a-check ............... Passed 0.02 sec Start 443: plm-compose-a-check -511/571 Test #443: plm-compose-a-check ................... Passed 0.06 sec +504/571 Test #437: plm-reg-autores-b-check ............... Passed 0.02 sec Start 445: plm-compose-b-warp -512/571 Test #445: plm-compose-b-warp .................... Passed 0.55 sec +505/571 Test #443: plm-compose-a-check ................... Passed 0.01 sec Start 447: plm-compose-b-check -513/571 Test #441: plm-compose-a-warp .................... Passed 0.64 sec +506/571 Test #447: plm-compose-b-check ................... Passed 0.02 sec Start 449: plm-compose-c-warp -514/571 Test #419: plm-reg-stiffness-a ................... Passed 1.20 sec +507/571 Test #360: plm-bsp-itk-output .................... Passed 0.25 sec Start 451: plm-compose-c-check -515/571 Test #418: plm-reg-roi-e ......................... Passed 1.23 sec +508/571 Test #451: plm-compose-c-check ................... Passed 0.01 sec Start 454: plm-resample-a-check -516/571 Test #447: plm-compose-b-check ................... Passed 0.07 sec +509/571 Test #454: plm-resample-a-check .................. Passed 0.01 sec Start 457: plm-resample-b-check -517/571 Test #451: plm-compose-c-check ................... Passed 0.06 sec +510/571 Test #457: plm-resample-b-check .................. Passed 0.02 sec Start 460: plm-resample-c-check -518/571 Test #454: plm-resample-a-check .................. Passed 0.05 sec +511/571 Test #460: plm-resample-c-check .................. Passed 0.02 sec Start 463: plm-scale-a-check -519/571 Test #457: plm-resample-b-check .................. Passed 0.04 sec +512/571 Test #463: plm-scale-a-check ..................... Passed 0.01 sec Start 466: plm-scale-vf-a-check -520/571 Test #460: plm-resample-c-check .................. Passed 0.02 sec +513/571 Test #466: plm-scale-vf-a-check .................. Passed 0.02 sec Start 472: plm-thumbnail-a-check -521/571 Test #463: plm-scale-a-check ..................... Passed 0.04 sec +514/571 Test #374: plm-bsp-landmark-a .................... Passed 0.31 sec Start 475: plm-thumbnail-b-check -522/571 Test #466: plm-scale-vf-a-check .................. Passed 0.05 sec +515/571 Test #472: plm-thumbnail-a-check ................. Passed 0.01 sec Start 478: plm-thumbnail-c-check -523/571 Test #472: plm-thumbnail-a-check ................. Passed 0.05 sec +516/571 Test #475: plm-thumbnail-b-check ................. Passed 0.01 sec Start 481: plm-intersect-check -524/571 Test #475: plm-thumbnail-b-check ................. Passed 0.04 sec +517/571 Test #478: plm-thumbnail-c-check ................. Passed 0.02 sec Start 484: plm-union-check -525/571 Test #478: plm-thumbnail-c-check ................. Passed 0.03 sec +518/571 Test #481: plm-intersect-check ................... Passed 0.02 sec Start 487: plm-threshold-a-check -526/571 Test #481: plm-intersect-check ................... Passed 0.02 sec +519/571 Test #484: plm-union-check ....................... Passed 0.02 sec Start 490: plm-threshold-b-check -527/571 Test #484: plm-union-check ....................... Passed 0.02 sec +520/571 Test #487: plm-threshold-a-check ................. Passed 0.02 sec Start 493: plm-threshold-c-check -528/571 Test #487: plm-threshold-a-check ................. Passed 0.06 sec +521/571 Test #490: plm-threshold-b-check ................. Passed 0.02 sec Start 494: plm-warp-pointset-a -529/571 Test #490: plm-threshold-b-check ................. Passed 0.06 sec +522/571 Test #493: plm-threshold-c-check ................. Passed 0.03 sec Start 495: plm-warp-pointset-b -530/571 Test #493: plm-threshold-c-check ................. Passed 0.03 sec +523/571 Test #445: plm-compose-b-warp .................... Passed 0.25 sec Start 496: plm-warp-pointset-c -531/571 Test #438: plm-reg-point-dmap-a .................. Passed 0.94 sec +524/571 Test #441: plm-compose-a-warp .................... Passed 0.29 sec Start 499: plm-warp-a-check -532/571 Test #499: plm-warp-a-check ...................... Passed 0.02 sec +525/571 Test #449: plm-compose-c-warp .................... Passed 0.26 sec Start 502: plm-warp-b-check-1 -533/571 Test #502: plm-warp-b-check-1 .................... Passed 0.02 sec +526/571 Test #416: plm-reg-roi-c ......................... Passed 0.35 sec Start 504: plm-warp-b-check-2 -534/571 Test #449: plm-compose-c-warp .................... Passed 0.32 sec +527/571 Test #499: plm-warp-a-check ...................... Passed 0.03 sec Start 507: plm-warp-c-check -535/571 Test #504: plm-warp-b-check-2 .................... Passed 0.02 sec +528/571 Test #502: plm-warp-b-check-1 .................... Passed 0.03 sec Start 510: plm-warp-d-check -536/571 Test #507: plm-warp-c-check ...................... Passed 0.02 sec +529/571 Test #504: plm-warp-b-check-2 .................... Passed 0.04 sec Start 513: plm-warp-f-check-1 -537/571 Test #510: plm-warp-d-check ...................... Passed 0.02 sec +530/571 Test #507: plm-warp-c-check ...................... Passed 0.02 sec Start 516: plm-warp-g-check-1 -538/571 Test #513: plm-warp-f-check-1 .................... Passed 0.02 sec +531/571 Test #510: plm-warp-d-check ...................... Passed 0.03 sec Start 519: plm-warp-h-check-1 -539/571 Test #516: plm-warp-g-check-1 .................... Passed 0.02 sec +532/571 Test #513: plm-warp-f-check-1 .................... Passed 0.03 sec Start 522: plm-warp-i-check-1 -540/571 Test #519: plm-warp-h-check-1 .................... Passed 0.02 sec +533/571 Test #516: plm-warp-g-check-1 .................... Passed 0.04 sec Start 525: plm-xf-convert-c -541/571 Test #522: plm-warp-i-check-1 .................... Passed 0.02 sec +534/571 Test #519: plm-warp-h-check-1 .................... Passed 0.03 sec Start 529: plm-xf-convert-d-warp-1-check -542/571 Test #494: plm-warp-pointset-a ................... Passed 0.17 sec +535/571 Test #522: plm-warp-i-check-1 .................... Passed 0.03 sec Start 532: plm-xf-convert-d-warp-2-check -543/571 Test #529: plm-xf-convert-d-warp-1-check ......... Passed 0.02 sec +536/571 Test #494: plm-warp-pointset-a ................... Passed 0.19 sec Start 533: plm-xf-convert-e -544/571 Test #532: plm-xf-convert-d-warp-2-check ......... Passed 0.02 sec +537/571 Test #496: plm-warp-pointset-c ................... Passed 0.17 sec Start 534: plm-xf-convert-f -545/571 Test #495: plm-warp-pointset-b ................... Passed 0.19 sec +538/571 Test #532: plm-xf-convert-d-warp-2-check ......... Passed 0.04 sec Start 535: plm-xf-convert-g -546/571 Test #496: plm-warp-pointset-c ................... Passed 0.17 sec +539/571 Test #529: plm-xf-convert-d-warp-1-check ......... Passed 0.05 sec Start 538: plm-xf-convert-h-check -547/571 Test #538: plm-xf-convert-h-check ................ Passed 0.02 sec +540/571 Test #495: plm-warp-pointset-b ................... Passed 0.22 sec Start 541: xf-invert-vf-zero-1-check -548/571 Test #525: plm-xf-convert-c ...................... Passed 0.21 sec +541/571 Test #538: plm-xf-convert-h-check ................ Passed 0.04 sec Start 544: xf-invert-vf-trans-1-check -549/571 Test #541: xf-invert-vf-zero-1-check ............. Passed 0.10 sec +542/571 Test #541: xf-invert-vf-zero-1-check ............. Passed 0.04 sec Start 546: xf-invert-vrs-a-check -550/571 Test #544: xf-invert-vf-trans-1-check ............ Passed 0.03 sec +543/571 Test #546: xf-invert-vrs-a-check ................. Passed 0.02 sec Start 548: xf-invert-vrs-b-check -551/571 Test #546: xf-invert-vrs-a-check ................. Passed 0.03 sec +544/571 Test #544: xf-invert-vf-trans-1-check ............ Passed 0.05 sec Start 551: proton-dose-1-check -552/571 Test #548: xf-invert-vrs-b-check ................. Passed 0.02 sec +545/571 Test #548: xf-invert-vrs-b-check ................. Passed 0.02 sec Start 554: proton-dose-4a-check -553/571 Test #551: proton-dose-1-check ................... Passed 0.03 sec +546/571 Test #415: plm-reg-roi-b ......................... Passed 0.61 sec Start 557: proton-dose-4d-check -554/571 Test #533: plm-xf-convert-e ...................... Passed 0.34 sec +547/571 Test #551: proton-dose-1-check ................... Passed 0.04 sec Start 560: proton-dose-5a-check -555/571 Test #535: plm-xf-convert-g ...................... Passed 0.33 sec - Start 563: proton-dose-5d-check -556/571 Test #554: proton-dose-4a-check .................. Passed 0.03 sec +548/571 Test #525: plm-xf-convert-c ...................... Passed 0.20 sec Start 566: proton-dose-6a-check -557/571 Test #557: proton-dose-4d-check .................. Passed 0.02 sec +549/571 Test #554: proton-dose-4a-check .................. Passed 0.04 sec +550/571 Test #557: proton-dose-4d-check .................. Passed 0.03 sec +551/571 Test #560: proton-dose-5a-check .................. Passed 0.03 sec +552/571 Test #566: proton-dose-6a-check .................. Passed 0.02 sec +553/571 Test #438: plm-reg-point-dmap-a .................. Passed 0.63 sec +554/571 Test #414: plm-reg-roi-a ......................... Passed 0.68 sec +555/571 Test #417: plm-reg-roi-d ......................... Passed 0.74 sec +556/571 Test #535: plm-xf-convert-g ...................... Passed 0.27 sec +557/571 Test #533: plm-xf-convert-e ...................... Passed 0.29 sec +558/571 Test #534: plm-xf-convert-f ...................... Passed 0.35 sec +559/571 Test #419: plm-reg-stiffness-a ................... Passed 0.86 sec +560/571 Test #561: proton-dose-5d ........................ Passed 5.73 sec + Start 562: proton-dose-5d-stats + Start 567: proton-dose-8d +561/571 Test #418: plm-reg-roi-e ......................... Passed 0.95 sec +562/571 Test #562: proton-dose-5d-stats .................. Passed 0.14 sec + Start 563: proton-dose-5d-check +563/571 Test #563: proton-dose-5d-check .................. Passed 0.01 sec +564/571 Test #567: proton-dose-8d ........................ Passed 0.27 sec Start 568: proton-dose-8d-stats -558/571 Test #560: proton-dose-5a-check .................. Passed 0.02 sec -559/571 Test #563: proton-dose-5d-check .................. Passed 0.15 sec -560/571 Test #566: proton-dose-6a-check .................. Passed 0.26 sec -561/571 Test #568: proton-dose-8d-stats .................. Passed 0.26 sec -562/571 Test #534: plm-xf-convert-f ...................... Passed 0.64 sec -563/571 Test #429: plm-reg-trans-mi-a .................... Passed 28.91 sec - Start 430: plm-reg-trans-mi-a-stats -564/571 Test #430: plm-reg-trans-mi-a-stats .............. Passed 0.21 sec - Start 431: plm-reg-trans-mi-a-check -565/571 Test #431: plm-reg-trans-mi-a-check .............. Passed 0.03 sec -566/571 Test #467: plm-sift-a ............................ Passed 14.42 sec - Start 468: plm-sift-a-check-1 - Start 469: plm-sift-a-check-2 -567/571 Test #468: plm-sift-a-check-1 .................... Passed 0.03 sec -568/571 Test #469: plm-sift-a-check-2 .................... Passed 0.14 sec -569/571 Test #569: wed-a ................................. Passed 19.77 sec +565/571 Test #568: proton-dose-8d-stats .................. Passed 0.12 sec +566/571 Test #569: wed-a ................................. Passed 3.07 sec Start 570: wed-b Start 571: wed-c -570/571 Test #571: wed-c ................................. Passed 6.03 sec -571/571 Test #570: wed-b ................................. Passed 13.83 sec +567/571 Test #571: wed-c ................................. Passed 0.78 sec +568/571 Test #570: wed-b ................................. Passed 1.77 sec +569/571 Test #467: plm-sift-a ............................ Passed 16.22 sec + Start 468: plm-sift-a-check-1 + Start 469: plm-sift-a-check-2 +570/571 Test #468: plm-sift-a-check-1 .................... Passed 0.01 sec +571/571 Test #469: plm-sift-a-check-2 .................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 571 -Total Test time (real) = 63.77 sec +Total Test time (real) = 24.46 sec make[2]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[1]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1' create-stamp debian/debhelper-build-stamp @@ -3648,7 +3718,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/plastimatch-1.9.3+dfsg.1' dh_auto_install - cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/plastimatch-1.9.3\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j15 install DESTDIR=/build/plastimatch-1.9.3\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.3+dfsg.1 -B/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/CMakeFiles /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -3658,66 +3728,66 @@ make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend -make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= -make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend +make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/devillard /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= -make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend +make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/inih-r29 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color= +make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/specfun /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/libs/nkidecompress /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build +make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build +make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/inih-r29/CMakeFiles/inih.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build make[4]: Nothing to be done for 'libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build -make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/clp/CMakeFiles/plmclp.dir/build'. -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/devillard/CMakeFiles/devillard.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/sys/CMakeFiles/plmsys.dir/build'. +make[4]: Nothing to be done for 'libs/specfun/CMakeFiles/specfun.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/nkidecompress/CMakeFiles/nkidecompress.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/clp/CMakeFiles/plmclp.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'libs/specfun/CMakeFiles/specfun.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/sys/CMakeFiles/plmsys.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 0%] Built target lbfgs [ 1%] Built target inih -[ 1%] Built target plmclp -[ 1%] Built target lbfgs [ 1%] Built target devillard +[ 1%] Built target specfun +[ 1%] Built target nkidecompress +[ 1%] Built target plmclp [ 4%] Built target plmsys -[ 4%] Built target nkidecompress make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend -[ 4%] Built target specfun make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/base /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' @@ -3744,20 +3814,20 @@ cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build [ 53%] Built target plmreconstruct make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/dose/CMakeFiles/plmdose.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= +[ 58%] Built target plmdose make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build -[ 58%] Built target plmdose make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/register/CMakeFiles/plmregister.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' @@ -3780,129 +3850,129 @@ make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build +make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build'. +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build'. +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/wed.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/demons.dir/build'. +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build'. +make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -[ 78%] Built target dlib_train -[ 78%] Built target dicom_uid -make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend -[ 79%] Built target compute_distance -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= -[ 80%] Built target demons -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend -[ 82%] Built target xvi_archive -[ 82%] Built target landmark_diff -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= -make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= -[ 83%] Built target dicom_info -make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/demons.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build +make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/wed.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build'. -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/check_grad.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/sobp.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/check_grad.dir/build'. +make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/sobp.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +[ 78%] Built target dlib_train +[ 79%] Built target landmark_diff +[ 79%] Built target dicom_uid +[ 80%] Built target wed +[ 80%] Built target shuffle_mha +[ 81%] Built target dicom_info +[ 82%] Built target compute_distance +[ 83%] Built target demons [ 83%] Built target hnd_to_pfm -[ 84%] Built target wed -[ 84%] Built target bragg_curve -[ 84%] Built target shuffle_mha +[ 84%] Built target xvi_archive [ 85%] Built target check_grad +[ 85%] Built target bragg_curve [ 86%] Built target sobp [ 87%] Built target merge_vfs make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +cd /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.3+dfsg.1 /build/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' +make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build +make[4]: Entering directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/cli/CMakeFiles/plastimatch.dir/build'. make[4]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1/obj-i686-linux-gnu' [100%] Built target plastimatch @@ -4134,196 +4204,196 @@ removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a' rm -rfv /build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake' removed directory '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch' removed directory '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake' rm -rfv /build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_union.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_union.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h' removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' -removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' +removed '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h' removed directory '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch' removed directory '/build/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include' make[1]: Leaving directory '/build/plastimatch-1.9.3+dfsg.1' @@ -4355,12 +4425,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/20695/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20695/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/25368 and its subdirectories -I: Current time: Tue Aug 3 18:37:31 -12 2021 -I: pbuilder-time-stamp: 1628059051 +I: removing directory /srv/workspace/pbuilder/20695 and its subdirectories +I: Current time: Wed Sep 7 03:05:56 +14 2022 +I: pbuilder-time-stamp: 1662469556