Diff of the two buildlogs: -- --- b1/build.log 2021-07-22 18:26:41.730780768 +0000 +++ b2/build.log 2021-07-22 18:29:42.112054949 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 22 06:14:05 -12 2021 -I: pbuilder-time-stamp: 1626977645 +I: Current time: Thu Aug 25 14:49:43 +14 2022 +I: pbuilder-time-stamp: 1661388583 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./octave-level-set_0.3.1~git.2019.04.13-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.8iVTIhZF/trustedkeys.kbx': General error -gpgv: Signature made Sun Jan 3 22:59:51 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.xSVtTjCM/trustedkeys.kbx': General error +gpgv: Signature made Tue Jan 5 00:59:51 2021 +14 gpgv: using RSA key 3F464391498FE874BDB5D98F2124AA1983785C90 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./octave-level-set_0.3.1~git.2019.04.13-2.dsc @@ -33,137 +33,171 @@ dpkg-source: info: applying skip-failings-bists.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/31619/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/64102/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/64102/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/64102/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='aa7e531aba8145679d3532b6e96de405' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='31619' - PS1='# ' - PS2='> ' + INVOCATION_ID=d11a7f0f7c96477ba6b319d9b894d529 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=64102 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.E6hHcANDVY/pbuilderrc_MlVk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.E6hHcANDVY/b1 --logfile b1/build.log octave-level-set_0.3.1~git.2019.04.13-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.E6hHcANDVY/pbuilderrc_oSMP --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.E6hHcANDVY/b2 --logfile b2/build.log --extrapackages usrmerge octave-level-set_0.3.1~git.2019.04.13-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin - total 5812 - -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more - -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 21 21:26 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/31619/tmp/hooks/D02_print_environment finished + total 5776 + -rwxr-xr-x 1 root root 1367848 Jun 22 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 2021 more + -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount + -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 25 14:49 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 25 05:46 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/64102/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -653,7 +687,7 @@ Get: 446 http://deb.debian.org/debian bullseye/main i386 dh-octave all 1.0.3 [21.9 kB] Get: 447 http://deb.debian.org/debian bullseye/main i386 octave-struct i386 1.0.16-8 [42.2 kB] Get: 448 http://deb.debian.org/debian bullseye/main i386 octave-parallel i386 4.0.0-2+b1 [205 kB] -Fetched 163 MB in 35s (4731 kB/s) +Fetched 163 MB in 2s (78.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -2491,8 +2525,25 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following NEW packages will be installed: + usrmerge +0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. +Need to get 13.0 kB of archives. +After this operation, 43.0 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 13.0 kB in 0s (0 B/s) +Selecting previously unselected package usrmerge. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37077 files and directories currently installed.) +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up usrmerge (25) ... +The system has been successfully converted. I: Building the package -I: Running cd /build/octave-level-set-0.3.1~git.2019.04.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/octave-level-set-0.3.1~git.2019.04.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package octave-level-set dpkg-buildpackage: info: source version 0.3.1~git.2019.04.13-2 dpkg-buildpackage: info: source distribution unstable @@ -2552,28 +2603,28 @@ CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security" /usr/bin/mkoctfile --verbose geomBoundary.cpp FastMarching.o Utils.o -o __levelset_geomBoundary.oct CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security" /usr/bin/mkoctfile --verbose geomGamma.cpp FastMarching.o Utils.o -o __levelset_geomGamma.oct CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security" /usr/bin/mkoctfile --verbose nbFromGeom.cpp FastMarching.o Utils.o -o __levelset_nbFromGeom.oct -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security internal_fastmarching.cpp -o /tmp/oct-6a8GT9.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security internal_init_narrowband.cpp -o /tmp/oct-RTvBfo.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security geomElements.cpp -o /tmp/oct-lcX2Nz.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security geomBoundary.cpp -o /tmp/oct-I0gDbC.o CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security" /usr/bin/mkoctfile --verbose internal_mesh.cpp FastMarching.o Utils.o -o __levelset_internal_mesh.oct -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security geomGamma.cpp -o /tmp/oct-Yk2iHG.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security nbFromGeom.cpp -o /tmp/oct-3Azc9g.o CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security" /usr/bin/mkoctfile --verbose upwindGrad.cpp FastMarching.o Utils.o -o __levelset_upwindGrad.oct -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security internal_mesh.cpp -o /tmp/oct-XGoL6q.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security upwindGrad.cpp -o /tmp/oct-jV6aQD.o -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_upwindGrad.oct FastMarching.o Utils.o /tmp/oct-jV6aQD.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_internal_init_narrowband.oct FastMarching.o Utils.o /tmp/oct-RTvBfo.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_internal_fastmarching.oct FastMarching.o Utils.o /tmp/oct-6a8GT9.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_geomBoundary.oct FastMarching.o Utils.o /tmp/oct-I0gDbC.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_nbFromGeom.oct FastMarching.o Utils.o /tmp/oct-3Azc9g.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_geomElements.oct FastMarching.o Utils.o /tmp/oct-lcX2Nz.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_geomGamma.oct FastMarching.o Utils.o /tmp/oct-Yk2iHG.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro -g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_internal_mesh.oct FastMarching.o Utils.o /tmp/oct-XGoL6q.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security internal_fastmarching.cpp -o /tmp/oct-nt3oaZ.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security internal_init_narrowband.cpp -o /tmp/oct-tFRro0.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security geomElements.cpp -o /tmp/oct-3l6O24.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security geomBoundary.cpp -o /tmp/oct-OqMXf9.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security geomGamma.cpp -o /tmp/oct-BVjKHf.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security nbFromGeom.cpp -o /tmp/oct-SXEbKi.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security internal_mesh.cpp -o /tmp/oct-nQPTJp.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security upwindGrad.cpp -o /tmp/oct-v16rFu.o +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_upwindGrad.oct FastMarching.o Utils.o /tmp/oct-v16rFu.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_internal_fastmarching.oct FastMarching.o Utils.o /tmp/oct-nt3oaZ.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_internal_init_narrowband.oct FastMarching.o Utils.o /tmp/oct-tFRro0.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_geomElements.oct FastMarching.o Utils.o /tmp/oct-3l6O24.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_nbFromGeom.oct FastMarching.o Utils.o /tmp/oct-SXEbKi.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_geomBoundary.oct FastMarching.o Utils.o /tmp/oct-OqMXf9.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_geomGamma.oct FastMarching.o Utils.o /tmp/oct-BVjKHf.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro +g++ -I/usr/include/octave-6.2.0/octave/.. -I/usr/include/octave-6.2.0/octave -pthread -fopenmp -mieee-fp -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/octave-level-set-0.3.1~git.2019.04.13=. -fstack-protector-strong -Wformat -Werror=format-security -o __levelset_internal_mesh.oct FastMarching.o Utils.o /tmp/oct-nQPTJp.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/i386-linux-gnu -Wl,-z,relro make[1]: Leaving directory '/build/octave-level-set-0.3.1~git.2019.04.13/src' copyfile /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_geomBoundary.oct /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_geomElements.oct /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_geomGamma.oct /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_internal_fastmarching.oct /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_internal_init_narrowband.oct /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_internal_mesh.oct /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_nbFromGeom.oct /build/octave-level-set-0.3.1~git.2019.04.13/./src/__levelset_upwindGrad.oct /build/octave-level-set-0.3.1~git.2019.04.13/./inst/i686-pc-linux-gnu-api-v55 -/tmp/octave-help-umdcDN:149: table requires an argument: the formatter for @item -/tmp/octave-help-umdcDN:149: table requires an argument: the formatter for @item +/tmp/octave-help-PAHZfr:149: table requires an argument: the formatter for @item +/tmp/octave-help-PAHZfr:149: table requires an argument: the formatter for @item warning: doc_cache_create: unusable help text found in file 'ls_sign_colourmap' warning: called from doc_cache_create>handle_function at line 98 column 5 @@ -2586,10 +2637,10 @@ pkg at line 568 column 9 /usr/share/dh-octave/install-pkg.m at line 43 column 1 -/tmp/octave-help-5m2OML:144: @code expected braces -/tmp/octave-help-5m2OML:148: @code expected braces -/tmp/octave-help-5m2OML:144: @code expected braces -/tmp/octave-help-5m2OML:148: @code expected braces +/tmp/octave-help-OTZk6r:144: @code expected braces +/tmp/octave-help-OTZk6r:148: @code expected braces +/tmp/octave-help-OTZk6r:144: @code expected braces +/tmp/octave-help-OTZk6r:148: @code expected braces warning: doc_cache_create: unusable help text found in file 'so_example_problem' warning: called from doc_cache_create>handle_function at line 98 column 5 @@ -2607,480 +2658,304 @@ dh_octave_check -O--buildsystem=octave Checking package... Checking m files ... -[inst/fastmarching.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/fastmarching.m -***** error - fastmarching () +[inst/ls_isempty.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_isempty.m ***** error - fastmarching (1, 2, 3, 4) + ls_isempty () ***** error - [a, b] = fastmarching (1, 2) -***** error - fastmarching ([1, 2], [1; 2]) -***** error - fastmarching ([1, 2], [1; 2], [1, 2]) -***** error - fastmarching ([NA, 1], [0, 5]); + ls_isempty (1, 2) ***** test - n = 600; - x = linspace (0, 1, n); - h = x(2) - x(1); + n = 50; + x = linspace (-10, 10, n); [XX, YY] = meshgrid (x, x); - u0 = NA (n, n); - u0(2 : end - 1, 2 : end - 1) = Inf; - u0(1, 1) = 0; - f = 1 + YY; - u = fastmarching (u0, h * f); - - % Length of vertical side: integrate (1 + y, y, 0, x) - vertLength = @(x) x/2 .* (x + 2); - % Speed difference at top and bottom, gives where the - % paths will meet on the bottom side. - % solve (x * fBot = fTop + (1 - x) * fBot, x) - fTop = mean (f(1, :)); - fBot = mean (f(end, :)); - xMeet = (fTop + fBot) / 2 / fBot; - botRow = vertLength (1) + fBot * x; - where = (x > xMeet); - botRow(where) = vertLength (1) + 1 + fBot * (1 - x(where)); + phi1 = (XX - 2).^2 + (YY - 2).^2 - 2^2; + phi2 = (XX + 2).^2 + (YY + 2).^2 - 2^2; - assert (u(1, :), x, sqrt (eps)); - assert (u(:, 1), vertLength (x'), 1e-3); - assert (u(:, end), 1 + vertLength (x'), 1e-3); - assert (u(end, :), botRow, 1e-3); -***** test - n = 1100; - x = linspace (0, 1, n); - h = x(2) - x(1); + assert (~ls_isempty (phi1) && ~ls_isempty (phi2)); + assert (ls_isempty (ls_intersect (phi1, phi2))); + assert (~ls_isempty (ls_union (phi1, phi2))); +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/so_step_armijo.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_step_armijo.m +***** function s = updateState (phi, data) + inside = ls_inside (phi); + vol = data.g.h * length (find (inside)); + cost = 1 / vol; - obst1 = round (0.5 / h); - obst2 = round (0.75 / h); - s1 = round (0.2 / h); - s1val = 1; - s2 = round (0.9 / h); - s2val = -1; + % Throw if the volume is too large. This is used + % to check the error handling code. + if (vol > 15) + error ("volume too large"); + endif - u0 = NA (n, 1); - u0([obst1, obst2]) = Inf; - u0([s1, s2]) = [s1val, s2val]; - f = ones (size (u0)); - g0 = NA (size (u0)); - g0([s1, s2]) = [s1val, s2val]; + s = struct ("phi", phi, "cost", cost); +***** endfunction +***** shared n, phi, baseData, d, f, dJ + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + a = 0; + b = 5; + phi = ls_genbasic (x, "box", a, b); - [u, g] = fastmarching (u0, g0, f * h); + baseData = struct (); + baseData.p = so_init_params (false); + baseData.g = struct ("x", x, "h", h); + baseData.cb = struct ("update_state", @updateState); + baseData.s = updateState (phi, baseData); + baseData.s.phi = phi; - gDesired = NA (size (u0)); - gDesired(1 : obst1 - 1) = s1val; - gDesired(obst2 + 1 : end) = s2val; - assert (g, gDesired, sqrt (eps)); + f = ones (size (phi)); + d = ls_solve_stationary (phi, f, h); - uDesired = NA (size (u0)); - uDesired([obst1, obst2]) = Inf; - uDesired(1 : obst1 - 1) = s1val + abs (s1 * h - x(1 : obst1 - 1)); - uDesired(obst2 + 1 : end) = s2val + abs (s2 * h - x(obst2 + 1 : end)); - assert (u, uDesired, 1e-3); + curVol = b - a; + dJ = -2 / curVol^2; +***** error + so_step_armijo (1, 2, 3, 4) +***** error + so_step_armijo (1, 2, 3, 4, 5, 6) +***** error + so_step_armijo ([1, 1], 2, 3, 4, struct ()) +***** error + so_step_armijo (1, 2, 3, [4, 4], struct ()) +***** error + so_step_armijo (1, 2, 3, 4, 5) +***** error + so_step_armijo (1, d, f, 4, baseData) +***** error + so_step_armijo (1, 2, f, dJ, baseData) +***** error + so_step_armijo (1, 2, 3, dJ, baseData) +***** error + data = baseData; + data.p.lineSearch.relaxation = 0; + so_step_armijo (1, d, f, dJ, data); +***** error + data = baseData; + data.p.lineSearch.relaxation = 1; + so_step_armijo (1, d, f, dJ, data); +***** error + data = baseData; + data.p.lineSearch.backtrack = 0; + so_step_armijo (1, d, f, dJ, data); +***** error + data = baseData; + data.p.lineSearch.backtrack = 1; + so_step_armijo (1, d, f, dJ, data); +***** error + data = baseData; + data.p.lineSearch.initial = 1; + so_step_armijo (1, d, f, dJ, data); +***** error + data = baseData; + data.p.lineSearch.minStep = -1; + so_step_armijo (1, d, f, dJ, data); ***** test - assert (fastmarching ([], []), []); + data = baseData; + data.p.lineSearch.minStep = 0; + so_step_armijo (1, d, f, dJ, data); ***** test - n = 42; - r = 1; - R = 2; - x = linspace (-R, R, n); - h = x(2) - x(1); - - [XX, YY, ZZ] = ndgrid (x); - RR = sqrt (XX.^2 + YY.^2 + ZZ.^2); - PPhi = NA (size (XX)); - for i = 1 : numel (PPhi) - pt = [XX(i), YY(i), ZZ(i)]; - PPhi(i) = acos (dot (pt, [0, 0, 1]) / norm (pt)); - endfor - - initial = (RR < r); - u0 = NA (size (XX)); - u0(initial) = 0; - g0 = NA (size (XX)); - g0(initial) = PPhi(initial); - f = ones (size (u0)); - [u, g] = fastmarching (u0, g0, h * f); - - assert (u(~initial), RR(~initial) - r, 1e-1); - assert (g(~initial), PPhi(~initial), 2e-1); -***** function [dx, dy] = gradient (fcn, h) - ext = NA (size (fcn) + 2); - ext(2 : end - 1, 2 : end - 1) = fcn; - ext(:, 1) = 2 * ext(:, 2) - ext(:, 3); - ext(:, end) = 2 * ext(:, end - 1) - ext(:, end - 2); - ext(1, :) = 2 * ext(2, :) - ext(3, :); - ext(end, :) = 2 * ext(end - 1, :) - ext(end - 2, :); - dx = (ext(2 : end - 1, 3 : end) - ext(2 : end - 1, 1 : end - 2)) / (2 * h); - dy = (ext(3 : end, 2 : end - 1) - ext(1 : end - 2, 2 : end - 1)) / (2 * h); -***** endfunction + data = baseData; + data.p.verbose = true; + data.p.lineSearch.relaxation = 0.9; + [~, t] = so_step_armijo (1, d, f, dJ, data); + assert (t < 0.5); +Armijo step 2.000000: cost = 0.110000 +Armijo step 1.600000: cost = 0.120732 +Armijo step 1.280000: cost = 0.133784 +Armijo step 1.024000: cost = 0.141429 +Armijo step 0.819200: cost = 0.150000 +Armijo step 0.655360: cost = 0.159677 +Armijo step 0.524288: cost = 0.165000 +Armijo step 0.419430: cost = 0.170690 +Armijo step 0.335544: cost = 0.176786 +Armijo step 0.268435: cost = 0.183333 +Armijo step 0.214748: cost = 0.183333 +Armijo step 0.171799: cost = 0.183333 ***** test - n = 1000; - x = linspace (-2, 2, n); - h = x(2) - x(1); + so_step_armijo (2, d, f, dJ, baseData); +***** error + so_step_armijo (3, d, f, dJ, baseData); +18 tests, 18 passed, 0 known failure, 0 skipped +[inst/ls_enforce.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_enforce.m +***** error + ls_enforce (1, 2) +***** error + ls_enforce (1, 2, 3, 4) +***** error + ls_enforce (1, "inside", [1, 2]); +***** error + ls_enforce (1, "foo", true); +***** error + ls_enforce (1, NA, false); +***** test + n = 100; + x = linspace (-10, 10, n); [XX, YY] = meshgrid (x, x); - phi0 = 2 * XX.^2 + 0.4 * YY.^2 - 1; - initial = (phi0 < 0); - %contour (XX, YY, phi0, [0, 0], "r"); - - f = ones (size (XX)); - u0 = NA (size (XX)); - u0(initial) = 0; - g0 = NA (size (XX)); - g0(initial) = sin (atan2 (YY(initial), XX(initial))); + circ2 = (XX.^2 + YY.^2 < 2^2); + circ8 = (XX.^2 + YY.^2 < 8^2); + phi = (XX.^2 + YY.^2 - 5^2); - [u, g] = fastmarching (u0, g0, h * f); + phi2 = ls_enforce (phi, "inside", circ8); + assert (ls_equal (phi2, phi)); + phi2 = ls_enforce (phi, "inside", circ2); + assert (ls_check (phi2, "inside", circ2)); - [dxu, dyu] = gradient (u, h); - [dxg, dyg] = gradient (g, h); + phi2 = ls_enforce (phi, "contain", circ2); + assert (ls_equal (phi2, phi)); + phi2 = ls_enforce (phi, "contain", circ8); + assert (ls_check (phi2, "contain", circ8)); - % We only verify the mean error here, since there tend - % to be lower-dimensional lines on which the error is - % large while it is very low otherwise. - err = abs (dxu .* dxg + dyu .* dyg); - assert (mean (err(initial)), 0, 1e-3); + phi2 = ls_enforce (phi, "outside", ~circ8); + assert (ls_equal (phi2, phi)); + phi2 = ls_enforce (phi, "outside", ~circ2); + ls_check (phi2, "outside", ~circ2); + phi2 = ls_enforce (phi, "outside", circ2); + ls_check (phi2, "outside", circ2); +6 tests, 6 passed, 0 known failure, 0 skipped +[inst/ls_check.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_check.m +***** error + ls_check (1, 2) +***** error + ls_check (1, 2, 3, 4) +***** error + ls_check (1, "inside", [1, 2]); +***** error + ls_check (1, "foo", true); +***** error + ls_check (1, NA, false); ***** test - u0 = [1.257221, NA, NA; Inf, 0.275128, 0.433001]; - f = [NA, 0.85714, 0.66667; NA, NA, NA]; - u = fastmarching (u0, f); -warning: increased distance in fast marching 1.121446 to 1.131670 -warning: called from - fastmarching at line 110 column 19 - __test__ at line 5 column 5 - test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 14 column 31 + n = 100; + x = linspace (-10, 10, n); + [XX, YY] = meshgrid (x, x); -***** test - u0 = [0, NA; Inf, 2]; - f = ones (size (u0)); - u = fastmarching (u0, f); - assert (u(1, 2), 1, sqrt (eps)); -warning: found too far alive point in fast marching, d = -8.000000 -warning: called from - fastmarching at line 110 column 19 - __test__ at line 5 column 5 - test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 14 column 31 + circ2 = (XX.^2 + YY.^2 < 2^2); + circ8 = (XX.^2 + YY.^2 < 8^2); + phi = (XX.^2 + YY.^2 - 5^2); -warning: found too far alive point in fast marching, d = -8.000000 -warning: called from - fastmarching at line 110 column 19 - __test__ at line 5 column 5 - test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 14 column 31 + assert (ls_check (phi, "inside", circ8)); + assert (ls_check (phi, "contain", circ2)); + assert (ls_check (phi, "outside", ~circ8)); + assert (~ls_check (phi, "inside", circ2)); + assert (~ls_check (phi, "contain", circ8)); + assert (~ls_check (phi, "outside", circ8)); +6 tests, 6 passed, 0 known failure, 0 skipped +[inst/upwind_gradient_norm.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/upwind_gradient_norm.m +***** error + upwind_gradient_norm () +***** error + upwind_gradient_norm (1, 2, 3, 4) +***** error + upwind_gradient_norm ([1, 1], [2, 2], [3, 3]) +***** error + upwind_gradient_norm ([1, 1], [2, 2, 2]) +***** error + upwind_gradient_norm ([1, 1], [2, 2, 2], 5) ***** test - u0 = [0, NA, NA, NA, 0.1; ... - Inf, Inf, Inf, Inf, Inf; ... - 0.1, NA, NA, NA, 0]; - f = ones (size (u0)); - u = fastmarching (u0, f); - - uExpected = [0, 1, 2, 1.1, 0.1; ... - Inf, Inf, Inf, Inf, Inf; ... - 0.1, 1.1, 2, 1, 0]; - assert (u, uExpected, sqrt (eps)); -***** xtest - ns = [101, 201, 501, 1001, 2001]; - realNs = NA (size (ns)); - times = NA (size (ns)); - for i = 1 : length (ns) - nMid = (ns(i) + 1) / 2; - assert (nMid, round (nMid)); - u0 = NA (ns(i), ns(i)); - u0(nMid, nMid) = 0; - f = ones (size (u0)); - realNs(i) = numel (u0); + phi = [0, 2, 3]; + fPos = ones (size (phi)); - old = cputime (); - u = fastmarching (u0, f); - new = cputime (); - times(i) = new - old; + % Propagate the original phi to the right. This should result + % in the *backward* difference to be used in the middle. + g = upwind_gradient_norm (phi); + assert (g(2), 2); + gp = upwind_gradient_norm (phi, fPos); + assert (gp, g); + gp = upwind_gradient_norm (phi, 0.5); + assert (gp, 2 * g); + gp = upwind_gradient_norm (phi, fPos, 0.5); + assert (gp, 2 * g); - printf ("n = %4d: t = %6.3f s\n", ns(i), times(i)); - endfor + % Propagate to the left for the reverse effect. + g = upwind_gradient_norm (phi, -fPos); + assert (g(2), 1); - nLogN = realNs .* log (realNs); - p = polyfit (log (realNs), log (times), 1); - pLogN = polyfit (log(nLogN), log (times), 1); - printf ("Exponents:\n O(n): %4.2f\n O(n log n): %4.2f\n", ... - p(1), pLogN(1)); - assert (p(1), 1, 1e-1); - assert (pLogN(1), 1, 1e-1); -n = 101: t = 0.036 s -n = 201: t = 0.153 s -n = 501: t = 0.999 s -n = 1001: t = 4.216 s -n = 2001: t = 18.229 s -Exponents: - O(n): 1.04 - O(n log n): 0.96 + % Propagate -phi, which again turns everything around. + g = upwind_gradient_norm (-phi, fPos); + assert (g(2), 1); + g = upwind_gradient_norm (-phi, -fPos); + assert (g(2), 2); ***** test - T = 1.6; - timeSteps = 10000; - L = 2; - gridSteps = 10000; - eps = 1e-4; - floorValue = -1/2; - tol = 7e-2; - - t = linspace (0, T, timeSteps); - dt = t(2) - t(1); - x = linspace (-L/2, L/2, gridSteps); - h = x(2) - x(1); - - F = sqrt (abs (x)); - phi0 = NA (size (x)); - phi0(1 : end/4) = floorValue; - phi0(3*end/4 : end) = floorValue; - phi0 = fastmarching (phi0, h ./ F); - - % Plot the speed field and initial data. - %{ - figure (); - plot (x, F, "r", x, phi0, "k"); - legend ("F", "\\phi_0"); - title ("Speed Field and Initial Data"); - ax = [-L/2, L/2, -1, 1]; - axis (ax); - %} - - % Create the Laplacian as matrix. We assume homogeneous Neumann boundary - % conditions so that the initial data can be chosen as we like. - Delta = spdiags (repmat ([1, -2, 1], gridSteps, 1), [-1, 0, 1], ... - gridSteps, gridSteps); - Delta(1, 1) += Delta(1, 2); - Delta(end, end) += Delta(end - 1, end); - Delta /= h^2; - - % Perform the calculation. The Laplacian is done implicitly, the - % non-linear term explicitly: - % - % phi+ - phi0 = dt (eps Delta phi+ - F |grad phi0|) - % => (I - dt eps Delta) phi+ = phi0 - F |grad phi0| - - %figure (); - phi = phi0'; - M = eye (gridSteps) - dt * eps * Delta; - for tInd = 2 : timeSteps - - % Calculate derivatives as symmetric differences, and zero on the - % boundary. Since the data is flat there, this is correct. - d = NA (size (phi)); - low = 1 : gridSteps - 2; - mid = 2 : gridSteps - 1; - high = 3 : gridSteps; - d(mid) = (phi(high) - phi(low)) / (2 * h); - d([1, end]) = 0; - gradNorm = abs (d); - - % Do the solve. - phi = M \ (phi - dt * F' .* gradNorm); - phiEx = max (phi0 - t(tInd), floorValue); - assert (phi, phiEx', tol); - - % Show solution as animation in real time. - %{ - if (mod (tInd, 100) == 0) - plot (x, phi, "r", x, phiEx, "k"); - legend ("Approximate", "Exact"); - axis (ax); - title (sprintf ("t = %.2f", t(tInd))); - drawnow (); - %pause (0.1); - endif - %} - endfor -***** demo - n = 100; + n = 50; x = linspace (-1, 1, n); h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - u0 = NA (size (XX)); - u0(sqrt (XX.^2 + YY.^2) < 0.5) = Inf; - u0(end, :) = 0; - f = 3 + XX; - g0 = NA (size (XX)); - g0(end, :) = x; - - [u, g] = fastmarching (u0, g0, h * f); - - figure (); - subplot (2, 2, 1); - imagesc (f); - colorbar (); - title ("Speed Field"); - subplot (2, 2, 2); - imagesc (u0); - colorbar (); - title ("Initial Distances"); - subplot (2, 2, 3); - imagesc (u); - colorbar (); - title ("Distance u"); - subplot (2, 2, 4); - imagesc (g); - colorbar (); - title ("Extended Function g"); -***** demo - pkgs = pkg ("list"); - file = false; - for i = 1 : length (pkgs) - if (strcmp (pkgs{i}.name, "level-set")) - file = fullfile (pkgs{i}.dir, "maze.png"); - endif - endfor - if (!file) - error ("could not locate example image file"); - endif - img = double (imread (file)) / 255; - - % Red is the start area, white (not black) the accessible domain. - start = (img(:, :, 1) > img(:, :, 2) + img(:, :, 3)); - domain = (img(:, :, 2) + img(:, :, 3) > 1.0) | start; - - u0 = NA (size (domain)); - u0(start) = 0; - u0(~domain) = Inf; - f = ones (size (u0)); - - u = fastmarching (u0, f); - u = u / max (u(isfinite (u))); + [XX, YY, ZZ] = ndgrid (x, x, x); - % Format result as image. - walls = isinf (u); - notReached = isna (u); - ur = u; - ug = u; - ub = u; - ur(notReached) = 1; - ug(notReached) = 0; - ub(notReached) = 0; - ur(walls) = 0; - ug(walls) = 0; - ub(walls) = 1; - ur(start) = 1; - ug(start) = 1; - ub(start) = 0; - u = NA (size (u, 1), size (u, 2), 3); - u(:, :, 1) = ur; - u(:, :, 2) = ug; - u(:, :, 3) = ub; + phi = XX.^2 + YY.^2 + ZZ.^2; + g = upwind_gradient_norm (phi, h); + + r = sqrt (phi); + assert (g, 2 * r, 0.1); +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/ls_sign_colourmap.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_sign_colourmap.m +***** shared colours + colours = [1, 1, 1; 0, 0, 0; 1, 1, 1; 0, 0, 0]; +***** error + ls_sign_colourmap (1, 2); +***** error + ls_sign_colourmap (1); +***** error + cmap = ls_sign_colourmap (); +***** error + ls_sign_colourmap ("foo"); +***** test figure (); - imshow (u); - title ("Solved Maze. Blue: Walls, Red: Unreachable, Yellow: Start."); -16 tests, 16 passed, 0 known failure, 0 skipped -[inst/ls_build_mesh.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_build_mesh.m + ls_sign_colourmap (); + ls_sign_colourmap ("highlight"); + ls_sign_colourmap (colours); + close (); ***** error - ls_build_mesh (1) + ls_sign_colourmap (1, 2, 3); ***** error - ls_build_mesh (1, 2, 3, 4) -***** error - x = linspace (-10, 10, 10); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - phi = ls_genbasic (XX, YY, "sphere", [0, 0], 5); - phi = ls_normalise (phi, h); - geom = ls_find_geometry (phi, h); - ls_build_mesh (geom, phi); -***** function verifyDirection (a, b, centre) - v1 = [a - centre; 0]; - v2 = [b - centre; 0]; - x = cross (v1, v2); - assert (x(1 : 2), zeros (2, 1)); - assert (x(3) > 0); -***** endfunction -***** function verifyMesh (geom, phi, glob) - [mesh, vmap] = ls_build_mesh (geom, phi, glob); - nPts = prod (geom.dim); - - % Verify ordering of triangle points. - for i = 1 : size (mesh.t, 2) - verifyDirection (mesh.p(:, mesh.t(1, i)), mesh.p(:, mesh.t(2, i)), ... - mesh.p(:, mesh.t(3, i))); - endfor - - % Go through all grid points and verify them with the mesh. - for i = 1 : nPts - gridInd = vmap.grid(i); - if (isna (gridInd)) - assert (!glob); - continue; - endif - - assert (vmap.mesh(gridInd), i); - assert (mesh.p(:, gridInd), geom.nodes.coord(i, :)'); - endfor - - % Go through all intersection points and verify them. - for i = 1 : geom.ispts.n - gridInd = vmap.ispt(i); - assert (vmap.mesh(gridInd), -i); - assert (mesh.p(:, gridInd), geom.ispts.coord(i, :)'); - endfor - - % Verify mesh.e against geom.bedges. - for i = 1 : geom.bedges.n - assert (mesh.e(1 : 2, i), vmap.ispt(geom.bedges.ispts(i, :)')); - assert (mesh.e(5, i), geom.bedges.comp(i)); - endfor -***** endfunction -***** function verifyPhi (phi, XX, YY, h) - for s = [-1, 1] - cur = phi * s; - cur = ls_normalise (cur, h); - geom = ls_find_geometry (cur, h); - geom = ls_absolute_geom (geom, XX, YY); - - verifyMesh (geom, cur, false); - verifyMesh (geom, cur, true); - endfor -***** endfunction + ls_sign_colourmap ([1, 2, 3]); +***** error + ls_sign_colourmap ([1, 2], 1); +***** error + ls_sign_colourmap ([1, 2], "foo"); ***** test - n = 20; - x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - phi = ls_union (ls_genbasic (XX, YY, "sphere", [-6, -6], 3), ... - ls_genbasic (XX, YY, "sphere", [6, 6], 3)); - verifyPhi (phi, XX, YY, h); + cmap = ls_sign_colourmap ([1, 2]); + cmap = ls_sign_colourmap ([1; 2], "highlight"); + cmap = ls_sign_colourmap ([1; 2], colours); +***** demo + n = 100; + x = linspace (-2, 2, n); + y = linspace (-1, 3, n); + [XX, YY] = meshgrid (x, y); + phi = ls_genbasic (XX, YY, "sphere", [0, 1], 1); - phi = ls_setdiff (ls_genbasic (XX, YY, "sphere", [0, 0], 8), ... - ls_genbasic (XX, YY, "sphere", [0, 0], 4)); - verifyPhi (phi, XX, YY, h); + figure (); + imagesc (x, y, phi); + set (gca (), "ydir", "normal"); + ls_sign_colourmap (); + colorbar (); + title ("Type 'sign'"); ***** demo - x = linspace (-10, 10, 11); + n = 100; + x = linspace (-2, 2, n); h = x(2) - x(1); [XX, YY] = meshgrid (x, x); - phi = ls_union (ls_genbasic (XX, YY, "sphere", [5, 5], 4.5), ... - ls_genbasic (XX, YY, "sphere", [-2, -2], 4)); - phi = ls_normalise (phi, h); - geom = ls_find_geometry (phi, h); - geom = ls_absolute_geom (geom, XX, YY); - - mesh = ls_build_mesh (geom, phi, false); - meshGlob = ls_build_mesh (geom, phi, true); + phi = ls_genbasic (XX, YY, "sphere", [0, 0], 1); + d = ls_signed_distance (phi, h); + F = YY .* exp (-10 * d.^2); figure (); hold ("on"); - trimesh (meshGlob.t(1 : 3, :)', meshGlob.p(1, :), meshGlob.p(2, :), "r"); - trimesh (mesh.t(1 : 3, :)', mesh.p(1, :), mesh.p(2, :), "g"); - for i = 1 : size (mesh.e, 2) - plot (mesh.p(1, mesh.e(1 : 2, i)), mesh.p(2, mesh.e(1 : 2, i)), "b"); - endfor + imagesc (x, x, F); + set (gca (), "ydir", "normal"); + ls_sign_colourmap ("highlight"); + colorbar (); + contour (XX, YY, phi, [0, 0], "k", "LineWidth", 2); hold ("off"); - legend ("Global", "Domain", "Boundary"); - axis ("equal"); - axis ("square"); -4 tests, 4 passed, 0 known failure, 0 skipped + title ("Type 'highlight'"); +10 tests, 10 passed, 0 known failure, 0 skipped [inst/ls_setdiff.m] >>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_setdiff.m ***** error @@ -3156,196 +3031,26 @@ hold ("off"); axis ("equal"); 4 tests, 4 passed, 0 known failure, 0 skipped -[inst/ls_solve_stationary.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_solve_stationary.m -***** error - ls_solve_stationary (1) -***** error - ls_solve_stationary (1, 2, 3, 4, 5) -***** error - ls_solve_stationary ([1, 2], [3; 4]); -***** error - ls_solve_stationary ([1, 2], [1, 2], :, [3; 4]); -***** test - assert (ls_solve_stationary ([], []), []); -***** function checkOutput (phi, f, d) - assert (all (isna (d(f == 0)))); - where = (f ~= 0); - assert (all (isfinite (d(where)) | isinf (d(where)))); - assert (sign (d(where)), sign (phi(where))); -***** endfunction -***** test - phis = ls_get_tests (); - for i = 1 : length (phis) - f = ones (size (phis{i})); - for j = -1 : 1 - phi = ls_normalise (phis{i}); - d = ls_solve_stationary (phi, j * f); - checkOutput (phi, j * f, d); - endfor - endfor -***** test - n = 101; - x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - r1 = (XX - 5).^2 + YY.^2; - r2 = (XX + 5).^2 + YY.^2; - - phi = ls_union (r1 - 2^2, r2 - 2^2); - f1 = max (r1 - 3^2, 1^2 - r1); - f2 = max (r2 - 3^2, 1^2 - r2); - f = min (f1, f2) .* sign (XX); - assert (~all (f(:) ~= 0)); - - d = ls_solve_stationary (phi, f, h); - - checkOutput (phi, f, d); - where = (f ~= 0); - assert (any (isinf (d(where)))); - - %{ - contour (phi, [0, 0]); - colorbar (); - figure (); - imagesc (f); - colorbar (); - figure (); - imagesc (d); - colorbar (); - %} -***** test - phi = [3, 1, -1, 1, 3]; - f = ones (size (phi)); - dists1 = ls_solve_stationary (phi, f); - dists2 = ls_solve_stationary (phi, f, :, [NA, NA, -0.1, NA, NA]); - - assert (dists1, [1.5, 0.5, -0.5, 0.5, 1.5], sqrt (eps)); - assert (dists2, [1.9, 0.9, -0.1, 0.9, 1.9]); -***** demo - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - phi0 = YY - XX + 15; - f = sign (XX) + 2; - - d = ls_solve_stationary (phi0, f, h); - figure (); - contour (XX, YY, d); - line ([0, 0], [-10, 10]); - title ("Refraction"); -***** demo - n = 101; - x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - phi0 = XX + 9; - f = ones (size (phi0)); - f(XX == 0 & abs (YY) > 2) = 0; - - d = ls_solve_stationary (phi0, f, h); - figure (); - contour (XX, YY, d); - line ([0, 0], [-10, -2]); - line ([0, 0], [2, 10]); - title ("Diffraction"); -8 tests, 8 passed, 0 known failure, 0 skipped -[inst/ls_signed_distance.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_signed_distance.m +[inst/ls_equal.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_equal.m ***** error - ls_signed_distance () + ls_equal (1) ***** error - ls_signed_distance (1, 2, 3) -***** test - assert (ls_signed_distance ([]), []); -***** test - n = 10; - x = linspace (-2, 2, n); - h = x(2) - x(1); - phi = abs (x) - 1; - - d = ls_signed_distance (phi, h); - assert (d, phi, sqrt (eps)); -***** test - n = 50; - x = linspace (-2, 2, n); - h = x(2) - x(1); - [XX, YY, ZZ] = ndgrid (x); - RRsq = XX.^2 + YY.^2 + ZZ.^2; - phi = RRsq - 1; - - d = ls_signed_distance (phi, h); - assert (d, sqrt (RRsq) - 1, h); -***** test - phi = [5e-6, 1.7e-154, -1.3e-2]; - for h = [0.02, 0.01, 0.005] - d = ls_signed_distance (phi, h); - assert (all (isfinite (d))); - assert (d(2), 0); - endfor + ls_equal (1, 2, 3) +***** error + ls_equal (1, [1, 2]) ***** test - phis = ls_get_tests (); - for i = 1 : length (phis) - phi = ls_normalise (phis{i}); - d = ls_signed_distance (phi); - assert (ls_equal (d, phi)); - endfor + assert (ls_equal ([Inf, 0, -2, -Inf, eps], ... + [1, 0, -Inf, -eps, 1])); + assert (ls_equal ([1, 0; -1, 0], [Inf, 0; -5, 0])); + assert (!ls_equal ([1, -1; 0, 0], [1, 0; 0, 0])); ***** test if (exist ("signbit") == 5) - phi = [-0, 0]; - d = ls_signed_distance (phi); - assert (ls_equal (phi, d)); + assert (ls_equal ([0, -0], [1, -1])); else warning ("'signbit' function not available, skipping test."); endif -***** demo - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - phi0 = atan (ls_union ((XX.^2 + (YY - 5).^2) - 20, ... - (XX.^2 + (YY + 5).^2) - 20)); - %phi0 = XX.^2 / 1.3^2 + YY.^2 - 1; - d = ls_signed_distance (phi0, h); - - figure (); - subplot (1, 2, 1); - contour (XX, YY, phi0); - title ("Initial"); - colorbar (); - axis ("equal"); - - subplot (1, 2, 2); - contour (XX, YY, d); - title ("Signed Distance"); - colorbar (); - axis ("equal"); -8 tests, 8 passed, 0 known failure, 0 skipped -[inst/so_save_descent.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_save_descent.m -***** error - so_save_descent (1, 2); -***** error - so_save_descent (1, 2, 3, 4); -***** error - so_save_descent (1, 2, 3); -***** error - so_save_descent (struct (), 2, struct ()); -***** error - so_save_descent ([2, 3], 2, struct ()); -***** error <'fsave' is not available> - pkg unload -nodeps parallel; - so_save_descent ("foo", 2, struct ()); -***** test - pkg load parallel; - so_save_descent ("foo", 2, struct ()); - so_save_descent (5, 2, struct ()); -7 tests, 7 passed, 0 known failure, 0 skipped +5 tests, 5 passed, 0 known failure, 0 skipped [inst/ls_find_geometry.m] >>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_find_geometry.m ***** error @@ -3571,91 +3276,178 @@ set (gca (), "xtick", x, "ytick", x, "xticklabel", "", "yticklabel", ""); hold ("off"); 12 tests, 12 passed, 0 known failure, 0 skipped -[inst/ls_hausdorff_dist.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_hausdorff_dist.m +[inst/ls_complement.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_complement.m ***** error - ls_hausdorff_dist (1) + ls_complement () ***** error - ls_hausdorff_dist (1, 2, 3, 4) -***** error - ls_hausdorff_dist (1, 2, [3, 3]) -***** error - ls_hausdorff_dist (1, 2, "foo") + ls_complement (1, 2) ***** test n = 50; - x = linspace (-5, 5, n); + x = linspace (-10, 10, n); h = x(2) - x(1); [XX, YY] = meshgrid (x, x); - phi1 = ls_genbasic (XX, YY, "sphere", [3, 0], 1); - phi2 = ls_genbasic (XX, YY, "sphere", [-2, 0], 2); - assert (ls_hausdorff_dist (phi1, phi2, h), 6, h); + phi1 = (XX - 2).^2 + (YY - 2).^2 - 2^2; + phi2 = (XX + 2).^2 + (YY + 2).^2 - 2^2; - % Make sure that phi isn't a signed-distance fcn already. - % ls_genbasic should return the same, but make it explicit. - rSq = XX.^2 + YY.^2; - d = ls_hausdorff_dist (rSq - 4^2, rSq - 2^2, h); - assert (d, 2, h); - dWrong = ls_hausdorff_dist (rSq - 4^2, rSq - 2^2, "sd"); - assert (abs (d - dWrong) > 10 * h); - dRight = ls_hausdorff_dist (sqrt (rSq) - 4, sqrt (rSq) - 2, "sd"); - assert (dRight, d, h); + assert (ls_disjoint (phi1, ls_complement (phi1))); + assert (ls_disjoint (phi2, ls_complement (phi2))); + + assert (~ls_disjoint (phi1, ls_complement (phi2))); + assert (~ls_disjoint (phi2, ls_complement (phi1))); + + sd1 = ls_signed_distance (ls_complement (phi1), h); + sd2 = ls_complement (ls_signed_distance (phi1, h)); + assert (sd1, sd2, sqrt (eps)); +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/ls_build_mesh.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_build_mesh.m +***** error + ls_build_mesh (1) +***** error + ls_build_mesh (1, 2, 3, 4) +***** error + x = linspace (-10, 10, 10); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + phi = ls_genbasic (XX, YY, "sphere", [0, 0], 5); + phi = ls_normalise (phi, h); + geom = ls_find_geometry (phi, h); + ls_build_mesh (geom, phi); +***** function verifyDirection (a, b, centre) + v1 = [a - centre; 0]; + v2 = [b - centre; 0]; + x = cross (v1, v2); + assert (x(1 : 2), zeros (2, 1)); + assert (x(3) > 0); +***** endfunction +***** function verifyMesh (geom, phi, glob) + [mesh, vmap] = ls_build_mesh (geom, phi, glob); + nPts = prod (geom.dim); + + % Verify ordering of triangle points. + for i = 1 : size (mesh.t, 2) + verifyDirection (mesh.p(:, mesh.t(1, i)), mesh.p(:, mesh.t(2, i)), ... + mesh.p(:, mesh.t(3, i))); + endfor + + % Go through all grid points and verify them with the mesh. + for i = 1 : nPts + gridInd = vmap.grid(i); + if (isna (gridInd)) + assert (!glob); + continue; + endif + + assert (vmap.mesh(gridInd), i); + assert (mesh.p(:, gridInd), geom.nodes.coord(i, :)'); + endfor + + % Go through all intersection points and verify them. + for i = 1 : geom.ispts.n + gridInd = vmap.ispt(i); + assert (vmap.mesh(gridInd), -i); + assert (mesh.p(:, gridInd), geom.ispts.coord(i, :)'); + endfor + + % Verify mesh.e against geom.bedges. + for i = 1 : geom.bedges.n + assert (mesh.e(1 : 2, i), vmap.ispt(geom.bedges.ispts(i, :)')); + assert (mesh.e(5, i), geom.bedges.comp(i)); + endfor +***** endfunction +***** function verifyPhi (phi, XX, YY, h) + for s = [-1, 1] + cur = phi * s; + cur = ls_normalise (cur, h); + geom = ls_find_geometry (cur, h); + geom = ls_absolute_geom (geom, XX, YY); + + verifyMesh (geom, cur, false); + verifyMesh (geom, cur, true); + endfor +***** endfunction ***** test - n = 200; - x = linspace (-5, 5, n); + n = 20; + x = linspace (-10, 10, n); h = x(2) - x(1); [XX, YY] = meshgrid (x, x); - phiA = ls_genbasic (XX, YY, "sphere", [0, 0], 4); - phiInner = ls_genbasic (XX, YY, "sphere", [0, 0], 2); - phiB = ls_setdiff (phiA, phiInner); + phi = ls_union (ls_genbasic (XX, YY, "sphere", [-6, -6], 3), ... + ls_genbasic (XX, YY, "sphere", [6, 6], 3)); + verifyPhi (phi, XX, YY, h); - d1 = ls_hausdorff_dist (phiA, phiB, h); - d2 = ls_hausdorff_dist (phiB, phiA, h); - assert (d1, d2); - assert (d1, 2, 2 * h); - dc = ls_hausdorff_dist (ls_complement (phiA), ... - ls_complement (phiB), h); - assert (dc, 4, 2 * h); + phi = ls_setdiff (ls_genbasic (XX, YY, "sphere", [0, 0], 8), ... + ls_genbasic (XX, YY, "sphere", [0, 0], 4)); + verifyPhi (phi, XX, YY, h); +***** demo + x = linspace (-10, 10, 11); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); - sdA = ls_signed_distance (phiA, h); - sdB = ls_signed_distance (phiB, h); - sdDiff = norm (sdA(:) - sdB(:), inf); - assert (abs (sdDiff - d1) > 10 * h); -6 tests, 6 passed, 0 known failure, 0 skipped -[inst/ls_setxor.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_setxor.m -***** error - ls_setxor (1) + phi = ls_union (ls_genbasic (XX, YY, "sphere", [5, 5], 4.5), ... + ls_genbasic (XX, YY, "sphere", [-2, -2], 4)); + phi = ls_normalise (phi, h); + geom = ls_find_geometry (phi, h); + geom = ls_absolute_geom (geom, XX, YY); + + mesh = ls_build_mesh (geom, phi, false); + meshGlob = ls_build_mesh (geom, phi, true); + + figure (); + hold ("on"); + trimesh (meshGlob.t(1 : 3, :)', meshGlob.p(1, :), meshGlob.p(2, :), "r"); + trimesh (mesh.t(1 : 3, :)', mesh.p(1, :), mesh.p(2, :), "g"); + for i = 1 : size (mesh.e, 2) + plot (mesh.p(1, mesh.e(1 : 2, i)), mesh.p(2, mesh.e(1 : 2, i)), "b"); + endfor + hold ("off"); + legend ("Global", "Domain", "Boundary"); + axis ("equal"); + axis ("square"); +4 tests, 4 passed, 0 known failure, 0 skipped +[inst/ls_intersect.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_intersect.m ***** error - ls_setxor (1, 2, 3) -***** error - ls_setxor (1, [1, 2]) + ls_intersect () +***** error + ls_intersect (1, -2, [1, 2]) ***** test - assert (ls_equal (ls_setxor ([-1, -1, Inf], [1, -1, -Inf]), [-1, 1, -1])); n = 50; x = linspace (-10, 10, n); - h = x(2) - x(1); [XX, YY] = meshgrid (x, x); - phi1 = XX.^2 + YY.^2 - 8^2; - phi2 = XX.^2 + YY.^2 - 5^2; + phi1 = (XX - 2).^2 + (YY - 2).^2 - 2^2; + phi2 = (XX + 2).^2 + (YY + 2).^2 - 2^2; + phi3 = XX.^2 + YY.^2 - 2^2; - assert (ls_equal (ls_setdiff (phi1, phi2), ls_setxor (phi1, phi2))); + assert (ls_isempty (ls_intersect (phi1, phi2))); + assert (ls_intersect (phi3), phi3); + + phi = ls_intersect (phi1, phi3); + assert (~ls_isempty (phi)); + assert (ls_issubset (phi, phi1) && ls_issubset (phi, phi3)); + + phi = ls_intersect (phi2, phi3); + assert (~ls_isempty (phi)); + assert (ls_issubset (phi, phi2) && ls_issubset (phi, phi3)); ***** demo n = 100; x = linspace (-7, 7, n); [XX, YY] = meshgrid (x, x); - phi1 = (XX - 2).^2 + YY.^2 - 3^2; - phi2 = (XX + 2).^2 + YY.^2 - 3^2; - phi = ls_setxor (phi1, phi2); + phi1 = (XX - 2 * cos (7/6 * pi)).^2 + (YY - 2 * sin (7/6 * pi)).^2 - 3^2; + phi2 = (XX - 2 * cos (11/6 * pi)).^2 + (YY - 2 * sin (11/6 * pi)).^2 - 3^2; + phi3 = XX.^2 + (YY - 2).^2 - 3^2; + phi = ls_intersect (phi1, phi2, phi3); figure (); subplot (1, 2, 1); hold ("on"); contour (XX, YY, phi1, [0, 0], "k"); contour (XX, YY, phi2, [0, 0], "k"); + contour (XX, YY, phi3, [0, 0], "k"); hold ("off"); axis ("equal"); @@ -3667,868 +3459,154 @@ contour (XX, YY, phi, [0, 0], "k"); hold ("off"); axis ("equal"); -4 tests, 4 passed, 0 known failure, 0 skipped -[inst/ls_init_narrowband.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_init_narrowband.m +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/ls_solve_stationary.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_solve_stationary.m ***** error - ls_init_narrowband () + ls_solve_stationary (1) ***** error - ls_init_narrowband (1, 2, 3) -***** test - assert (ls_init_narrowband ([]), []); -***** test - n = 10; - x = linspace (-2, 2, n); - h = x(2) - x(1); - phi = abs (x) - 1; - - d = ls_init_narrowband (phi, h); - where = ~isna (d); - assert (d(where), phi(where), sqrt (eps)); -***** test - n = 50; - x = linspace (-2, 2, n); - h = x(2) - x(1); - [XX, YY, ZZ] = ndgrid (x); - RRsq = XX.^2 + YY.^2 + ZZ.^2; - phi = RRsq - 1; - - d = ls_init_narrowband (phi, h); - where = ~isna (d); - assert (d(where), sqrt (RRsq(where)) - 1, h / 3); + ls_solve_stationary (1, 2, 3, 4, 5) +***** error + ls_solve_stationary ([1, 2], [3; 4]); +***** error + ls_solve_stationary ([1, 2], [1, 2], :, [3; 4]); ***** test - tol = sqrt (eps); - assert (ls_init_narrowband ([Inf, -Inf, Inf]), [0.5, -0.5, 0.5], tol); - assert (ls_init_narrowband ([Inf, -1, Inf]), [1, 0, 1], tol); - %assert (ls_init_narrowband ([1, -Inf, 1]), [0, 1, 0], tol); -***** function dh = distToSegment (x, a, b) - dir = b - a; - dir /= norm (dir); - proj = dot (x - a, dir); - if (proj < 0) - dh = norm (x - a); - elseif (proj > 1) - dh = norm (x - b); - else - dh = norm (x - (a + proj * dir)); - endif -***** endfunction -***** function dh = distToLine (x, c) - assert (c(1, 1), 0); - dh = Inf; - for i = 2 : size (c, 2) - 1 - dh = min (dh, distToSegment (x, c(:, i), c(:, i + 1))); - endfor -***** endfunction -***** function dh = distOfContoursAsym (c1, c2) - dh = 0; - for i = 2 : size (c1, 2) - dh = max (dh, distToLine (c1(:, i), c2)); - endfor -***** endfunction -***** function dh = distOfContours (c1, c2) - dh = max (distOfContoursAsym (c1, c2), distOfContoursAsym (c2, c1)); + assert (ls_solve_stationary ([], []), []); +***** function checkOutput (phi, f, d) + assert (all (isna (d(f == 0)))); + where = (f ~= 0); + assert (all (isfinite (d(where)) | isinf (d(where)))); + assert (sign (d(where)), sign (phi(where))); ***** endfunction ***** test phis = ls_get_tests (); - printf ("Comparing contours for %d cases...\n", length (phis)); for i = 1 : length (phis) - d = ls_init_narrowband (phis{i}); - c1 = contourc (d, [0, 0]); - if (size (c1, 2) > 0) - c2 = contourc (phis{i}, [0, 0]); - dh = distOfContours (c1, c2); - printf ("i = %d: dist = %f\n", i, dh); - if (isfinite (dh)) - assert (dh, 0, 1e-1); - endif - endif + f = ones (size (phis{i})); + for j = -1 : 1 + phi = ls_normalise (phis{i}); + d = ls_solve_stationary (phi, j * f); + checkOutput (phi, j * f, d); + endfor endfor -Comparing contours for 6 cases... -i = 1: dist = 0.060660 -i = 2: dist = Inf -i = 4: dist = 0.039039 -i = 5: dist = 0.085786 -i = 6: dist = 0.085786 -7 tests, 7 passed, 0 known failure, 0 skipped -[inst/so_example_problem.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_example_problem.m -***** shared basicData - basicData = struct (); - basicData.p = so_init_params (true); - basicData.p.vol = 4; - basicData.p.weight = 10; - - n = 50; - x = linspace (-4, 5, n); - h = x(2) - x(1); - basicData.g = struct ("x", x, "h", h); -***** error - so_example_problem (); -***** error - so_example_problem (1, 2); -***** error - so_example_problem (1); -***** test - data = so_example_problem (basicData); - phi = ls_genbasic (data.g.x, "box", -2.5, 1.3); - - [a, b] = data.util.bounds (phi, data); - assert (a, -2.5, sqrt (eps)); - assert (b, 1.3, sqrt (eps)); ***** test - data = so_example_problem (basicData); - - phi = ls_genbasic (data.g.x, "box", -2, 2); - s0 = data.cb.update_state (phi, data); - - phi = ls_genbasic (data.g.x, "box", -3, 3); - s1 = data.cb.update_state (phi, data); - - phi = ls_genbasic (data.g.x, "box", -1, 1); - s2 = data.cb.update_state (phi, data); + n = 101; + x = linspace (-10, 10, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); - phi = ls_genbasic (data.g.x, "box", -1, 3); - s3 = data.cb.update_state (phi, data); + r1 = (XX - 5).^2 + YY.^2; + r2 = (XX + 5).^2 + YY.^2; - phi = ls_genbasic (data.g.x, "box", -3, 1); - s4 = data.cb.update_state (phi, data); + phi = ls_union (r1 - 2^2, r2 - 2^2); + f1 = max (r1 - 3^2, 1^2 - r1); + f2 = max (r2 - 3^2, 1^2 - r2); + f = min (f1, f2) .* sign (XX); + assert (~all (f(:) ~= 0)); - assert (all ([s0.cost, s1.cost, s2.cost, s3.cost, s4.cost] >= 0)); - assert (s0.cost, 0, 1e-1); - assert (s1.cost > s3.cost); - assert (s1.cost > s4.cost); - assert (s2.cost > s3.cost); - assert (s2.cost > s4.cost); - assert (s3.cost > s0.cost); - assert (s4.cost > s0.cost); -***** function testDeriv (a, b, data) - phi = ls_genbasic (data.g.x, "box", a, b); - data.s = data.cb.update_state (phi, data); - [f, dJ] = data.cb.get_direction (data); - assert (dJ < 0); + d = ls_solve_stationary (phi, f, h); - dt = 5e-3; - dists = ls_solve_stationary (phi, f, data.g.h); - phip = ls_extract_solution (dt, dists, phi, f); - sp = data.cb.update_state (phip, data); + checkOutput (phi, f, d); + where = (f ~= 0); + assert (any (isinf (d(where)))); - assert (sp.cost < data.s.cost); - relErr = abs (sp.cost - (data.s.cost + dt * dJ)) / data.s.cost; - assert (relErr < 0.1); -***** endfunction + %{ + contour (phi, [0, 0]); + colorbar (); + figure (); + imagesc (f); + colorbar (); + figure (); + imagesc (d); + colorbar (); + %} ***** test - data = so_example_problem (basicData); + phi = [3, 1, -1, 1, 3]; + f = ones (size (phi)); + dists1 = ls_solve_stationary (phi, f); + dists2 = ls_solve_stationary (phi, f, :, [NA, NA, -0.1, NA, NA]); - testDeriv (-1, 1, data); - testDeriv (-3, 3, data); - testDeriv (-1, 3, data); - testDeriv (-3, 1, data); -6 tests, 6 passed, 0 known failure, 0 skipped -[inst/ls_enforce_speed.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_enforce_speed.m -***** error - ls_enforce_speed (1, 2) -***** error - ls_enforce_speed (1, 2, 3, 4) -***** error - ls_enforce_speed (1, "inside", [1, 2]); -***** error - ls_enforce_speed (1, "foo", true); -***** error - ls_enforce_speed (1, NA, false); -***** function checkCircleRadius (XX, YY, h, phi, r) - phiCorrect = XX.^2 + YY.^2 - r^2; - sd1 = ls_signed_distance (phi, h); - sd2 = ls_signed_distance (phiCorrect, h); - assert (sd1, sd2, h); -***** endfunction -***** test + assert (dists1, [1.5, 0.5, -0.5, 0.5, 1.5], sqrt (eps)); + assert (dists2, [1.9, 0.9, -0.1, 0.9, 1.9]); +***** demo n = 100; x = linspace (-10, 10, n); h = x(2) - x(1); [XX, YY] = meshgrid (x, x); - phi = XX.^2 + YY.^2 - 3^2; - F = ones (size (XX)); - whereContain = (XX.^2 + YY.^2 < 5^2); - F = ls_enforce_speed (F, "contain", whereContain); - whereInside = (XX.^2 + YY.^2 < 8^2); - F = ls_enforce_speed (F, "inside", whereInside); - dists = ls_solve_stationary (phi, F, h); - phi2 = ls_extract_solution (10, dists, phi, F); - assert (ls_check (phi2, "contain", whereContain)); - assert (ls_check (phi2, "inside", whereInside)); - checkCircleRadius (XX, YY, h, phi2, 8); + phi0 = YY - XX + 15; + f = sign (XX) + 2; - phi = XX.^2 + YY.^2 - 8^2; - F = -ones (size (XX)); - whereContain = (XX.^2 + YY.^2 < 5^2); - F = ls_enforce_speed (F, "contain", whereContain); - whereOutside = (XX.^2 + YY.^2 >= 7^2); - F = ls_enforce_speed (F, "outside", whereOutside); - dists = ls_solve_stationary (phi, F, h); - phi2 = ls_extract_solution (10, dists, phi, F); - assert (ls_check (phi2, "contain", whereContain)); - assert (ls_check (phi2, "outside", whereOutside)); - checkCircleRadius (XX, YY, h, phi2, 5); + d = ls_solve_stationary (phi0, f, h); + figure (); + contour (XX, YY, d); + line ([0, 0], [-10, 10]); + title ("Refraction"); ***** demo - n = 100; + n = 101; x = linspace (-10, 10, n); h = x(2) - x(1); [XX, YY] = meshgrid (x, x); - phi = XX.^2 + YY.^2 - 8^2; - F = -ones (size (XX)); - F = ls_enforce_speed (F, "outside", XX.^2 + YY.^2 >= 7^2); - F = ls_enforce_speed (F, "contain", XX.^2 + YY.^2 < 3^2); - times = linspace (1, 6, 40); - ls_animate_evolution (phi, F, h, times, 0.05); + phi0 = XX + 9; + f = ones (size (phi0)); + f(XX == 0 & abs (YY) > 2) = 0; - phi = XX.^2 + YY.^2 - 3^2; - F = ones (size (XX)); - F = ls_enforce_speed (F, "inside", XX.^2 + YY.^2 < 8^2); - F = ls_enforce_speed (F, "contain", XX.^2 + YY.^2 < 5^2); - ls_animate_evolution (phi, F, h, times, 0.05); -6 tests, 6 passed, 0 known failure, 0 skipped -[inst/ls_distance_fcn.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_distance_fcn.m -***** error - ls_distance_fcn () + d = ls_solve_stationary (phi0, f, h); + figure (); + contour (XX, YY, d); + line ([0, 0], [-10, -2]); + line ([0, 0], [2, 10]); + title ("Diffraction"); +8 tests, 8 passed, 0 known failure, 0 skipped +[inst/ls_union.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_union.m ***** error - ls_distance_fcn (1, 2, 3) -***** test - assert (ls_distance_fcn ([]), []); -***** test - n = 10; - x = linspace (-2, 2, n); - h = x(2) - x(1); - phi = abs (x) - 1; - - d = ls_distance_fcn (phi, h); - assert (d, max (phi, 0), sqrt (eps)); + ls_union () +***** error + ls_union (1, -2, [1, 2]) ***** test n = 50; - x = linspace (-2, 2, n); - h = x(2) - x(1); - [XX, YY, ZZ] = ndgrid (x); - RRsq = XX.^2 + YY.^2 + ZZ.^2; - phi = RRsq - 1; - - d = ls_distance_fcn (phi, h); - assert (d, max (sqrt (RRsq) - 1, 0), h); -***** xtest - n = 500; x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - phi = ls_genbasic (XX, YY, "sphere", [0, 0], 8); - id = tic (); - d = ls_distance_fcn (phi, h); - time1 = toc (id); + phi1 = (XX - 3).^2 + (YY - 3).^2 - 2^2; + phi2 = (XX + 3).^2 + (YY + 3).^2 - 2^2; + phi3 = XX.^2 + YY.^2 - 2^2; - id = tic (); - sd = ls_signed_distance (phi, h); - time2 = toc (id); + phi = ls_union (phi1, phi2, phi3); + assert (ls_issubset (phi1, phi)); + assert (ls_issubset (phi2, phi)); + assert (ls_issubset (phi3, phi)); - assert (d, max (sd, 0), sqrt (eps)); - printf ("ls_distance_fcn faster than ls_signed_distance by %.1f%%\n", ... - 100 * ((time2 - time1) / time2)); - assert (time1 < time2); -ls_distance_fcn faster than ls_signed_distance by 25.6% -***** test - phis = ls_get_tests (); - for i = 1 : length (phis) - phi = ls_normalise (phis{i}); - d = ls_distance_fcn (phi); - sd = ls_signed_distance (phi); - assert (d, max (sd, 0), sqrt (eps)); - endfor + assert (ls_union (phi3), phi3); ***** demo n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - phi = ls_genbasic (XX, YY, "sphere", [0, 0], [8, 5]); - d = ls_distance_fcn (phi, h); - - figure (); - mesh (XX, YY, d); - view ([45, 45]); -7 tests, 7 passed, 0 known failure, 0 skipped -[inst/so_step_armijo.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_step_armijo.m -***** function s = updateState (phi, data) - inside = ls_inside (phi); - vol = data.g.h * length (find (inside)); - cost = 1 / vol; - - % Throw if the volume is too large. This is used - % to check the error handling code. - if (vol > 15) - error ("volume too large"); - endif - - s = struct ("phi", phi, "cost", cost); -***** endfunction -***** shared n, phi, baseData, d, f, dJ - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - a = 0; - b = 5; - phi = ls_genbasic (x, "box", a, b); - - baseData = struct (); - baseData.p = so_init_params (false); - baseData.g = struct ("x", x, "h", h); - baseData.cb = struct ("update_state", @updateState); - baseData.s = updateState (phi, baseData); - baseData.s.phi = phi; - - f = ones (size (phi)); - d = ls_solve_stationary (phi, f, h); - - curVol = b - a; - dJ = -2 / curVol^2; -***** error - so_step_armijo (1, 2, 3, 4) -***** error - so_step_armijo (1, 2, 3, 4, 5, 6) -***** error - so_step_armijo ([1, 1], 2, 3, 4, struct ()) -***** error - so_step_armijo (1, 2, 3, [4, 4], struct ()) -***** error - so_step_armijo (1, 2, 3, 4, 5) -***** error - so_step_armijo (1, d, f, 4, baseData) -***** error - so_step_armijo (1, 2, f, dJ, baseData) -***** error - so_step_armijo (1, 2, 3, dJ, baseData) -***** error - data = baseData; - data.p.lineSearch.relaxation = 0; - so_step_armijo (1, d, f, dJ, data); -***** error - data = baseData; - data.p.lineSearch.relaxation = 1; - so_step_armijo (1, d, f, dJ, data); -***** error - data = baseData; - data.p.lineSearch.backtrack = 0; - so_step_armijo (1, d, f, dJ, data); -***** error - data = baseData; - data.p.lineSearch.backtrack = 1; - so_step_armijo (1, d, f, dJ, data); -***** error - data = baseData; - data.p.lineSearch.initial = 1; - so_step_armijo (1, d, f, dJ, data); -***** error - data = baseData; - data.p.lineSearch.minStep = -1; - so_step_armijo (1, d, f, dJ, data); -***** test - data = baseData; - data.p.lineSearch.minStep = 0; - so_step_armijo (1, d, f, dJ, data); -***** test - data = baseData; - data.p.verbose = true; - data.p.lineSearch.relaxation = 0.9; - [~, t] = so_step_armijo (1, d, f, dJ, data); - assert (t < 0.5); -Armijo step 2.000000: cost = 0.110000 -Armijo step 1.600000: cost = 0.120732 -Armijo step 1.280000: cost = 0.133784 -Armijo step 1.024000: cost = 0.141429 -Armijo step 0.819200: cost = 0.150000 -Armijo step 0.655360: cost = 0.159677 -Armijo step 0.524288: cost = 0.165000 -Armijo step 0.419430: cost = 0.170690 -Armijo step 0.335544: cost = 0.176786 -Armijo step 0.268435: cost = 0.183333 -Armijo step 0.214748: cost = 0.183333 -Armijo step 0.171799: cost = 0.183333 -***** test - so_step_armijo (2, d, f, dJ, baseData); -***** error - so_step_armijo (3, d, f, dJ, baseData); -18 tests, 18 passed, 0 known failure, 0 skipped -[inst/ls_genbasic.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_genbasic.m -***** shared x, y, XX, YY, XXX, YYY, ZZZ - n = 121; - x = linspace (-5, 7, n); - y = linspace (-7, 5, n); - [XX, YY] = meshgrid (x, y); - [XXX, YYY, ZZZ] = ndgrid (x, y, x); -***** error - ls_genbasic (); -***** error - ls_genbasic (1, 2); -***** error - ls_genbasic ("sphere"); -***** error - ls_genbasic (XX, YY, "unknown"); -***** test - ls_genbasic (x, "sphere", 0, 1); - ls_genbasic (x', "sphere", 0, 1); - ls_genbasic (XX, YY, "sphere", [0, 0], 1); - ls_genbasic (0, 1, "sphere", [0, 0], 1); -***** error - ls_genbasic (XX, YY, "sphere"); -***** error - ls_genbasic (XX, YY, "sphere", 1); -***** error - ls_genbasic (XX, YY, "sphere", 1, 2, 3); -***** error - ls_genbasic (XX, YY, "sphere", [1, 2, 3], 1); -***** error - ls_genbasic (XX, YY, "sphere", [1, 2], [1, 2, 3]); -***** test - assert (ls_genbasic (XX, YY, "sphere", [1, -1], 1), ... - ls_genbasic (XX, YY, "sphere", [1, -1], [1, 1])); -***** test - c = [1; -1; 2]; - r = [1; 2; 0.6]; - tol = 0.4; - phi1 = ls_genbasic (XXX, YYY, ZZZ, "sphere", c, r); - phi2 = ls_genbasic (XXX, YYY, ZZZ, "sphere", c, min (r) - tol); - assert (ls_issubset (phi2, phi1)); - coords = {XXX, YYY, ZZZ}; - for i = 1 : length (c) - assert (ls_disjoint (phi1, ... - coords{i} - (c(i) - r(i)), ... - c(i) + r(i) - coords{i})); - assert (~ls_disjoint (phi1 - tol, coords{i} - (c(i) - r(i)))); - assert (~ls_disjoint (phi1 - tol, c(i) + r(i) - coords{i})); - endfor -***** error - ls_genbasic (XX, YY, "box", 1); -***** error - ls_genbasic (XX, YY, "box", 1, 2, 3); -***** error - ls_genbasic (XX, YY, "box", [1, 2, 3], [1, 2]); -***** error - ls_genbasic (XX, YY, "box", [1; 2], [1, 2, 3]); -***** test - assert (ls_equal (ls_genbasic (x, "box", -1, 2), abs (x - 0.5) - 1.5)); - assert (ls_equal (ls_genbasic (x, "box", 2, -1), abs (x - 0.5) - 1.5)); -***** test - a = [2; -3; 1]; - b = [0; 2; -1]; - tol = 0.2; - phi1 = ls_genbasic (XXX, YYY, ZZZ, "box", a, b); - phi2 = ls_genbasic (XXX, YYY, ZZZ, "box", b, a); - assert (phi1, phi2); - coords = {XXX, YYY, ZZZ}; - for i = 1 : length (coords) - assert (ls_disjoint (phi1, ... - coords{i} - min (a(i), b(i)), ... - max (a(i), b(i)) - coords{i})); - assert (~ls_disjoint (phi1 - tol, coords{i} - min (a(i), b(i)))); - assert (~ls_disjoint (phi1 - tol, max (a(i), b(i)) - coords{i})); - endfor -***** error - ls_genbasic (XX, YY, "half", 1); -***** error - ls_genbasic (XX, YY, "half", 1, 2, 3); -***** error - ls_genbasic (XX, YY, "half", [1, 2, 3], [1, 2]); -***** error - ls_genbasic (XX, YY, "half", [1; 2], [1, 2, 3]); -***** test - p = [0, 2, 1]; - - phi = ls_genbasic (XXX, YYY, ZZZ, "half", p, [0; 0; 1]); - assert (ls_equal (phi, 1 - ZZZ)); - - normal = [1; 2; -0.5]; - phi1 = ls_genbasic (XXX, YYY, ZZZ, "half", p, normal); - phi2 = ls_genbasic (XXX, YYY, ZZZ, "half", p, 2 * normal); - assert (ls_equal (phi1, phi2)); - - phi = ls_genbasic (XX, YY, "half", [0, 0], [1, -1]); - assert (ls_equal (phi, YY - XX)); -***** demo - n = 200; x = linspace (-7, 7, n); [XX, YY] = meshgrid (x, x); - phi1 = ls_genbasic (XX, YY, "box", [-5, -3], [3, 6]); - phi2 = ls_genbasic (XX, YY, "sphere", [-1; 1], 2); - phi3 = ls_genbasic (XX, YY, "sphere", [0; 0], [6, 1]); - phi4 = ls_genbasic (XX, YY, "half", [3, -3], [1, -2]) / 8; + phi1 = (XX - 2 * cos (7/6 * pi)).^2 + (YY - 2 * sin (7/6 * pi)).^2 - 3^2; + phi2 = (XX - 2 * cos (11/6 * pi)).^2 + (YY - 2 * sin (11/6 * pi)).^2 - 3^2; + phi3 = XX.^2 + (YY - 2).^2 - 3^2; + phi = ls_union (phi1, phi2, phi3); - phi = ls_union (ls_setdiff (phi1, phi2), phi3, phi4); figure (); + subplot (1, 2, 1); hold ("on"); - imagesc (x, x, phi); - set (gca (), "ydir", "normal"); - ls_sign_colourmap (); - contour (XX, YY, phi, [0, 0], "k"); + contour (XX, YY, phi1, [0, 0], "k"); + contour (XX, YY, phi2, [0, 0], "k"); + contour (XX, YY, phi3, [0, 0], "k"); hold ("off"); axis ("equal"); -23 tests, 23 passed, 0 known failure, 0 skipped -[inst/ls_equal.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_equal.m -***** error - ls_equal (1) -***** error - ls_equal (1, 2, 3) -***** error - ls_equal (1, [1, 2]) -***** test - assert (ls_equal ([Inf, 0, -2, -Inf, eps], ... - [1, 0, -Inf, -eps, 1])); - assert (ls_equal ([1, 0; -1, 0], [Inf, 0; -5, 0])); - assert (!ls_equal ([1, -1; 0, 0], [1, 0; 0, 0])); -***** test - if (exist ("signbit") == 5) - assert (ls_equal ([0, -0], [1, -1])); - else - warning ("'signbit' function not available, skipping test."); - endif -5 tests, 5 passed, 0 known failure, 0 skipped -[inst/ls_sign_colourmap.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_sign_colourmap.m -***** shared colours - colours = [1, 1, 1; 0, 0, 0; 1, 1, 1; 0, 0, 0]; -***** error - ls_sign_colourmap (1, 2); -***** error - ls_sign_colourmap (1); -***** error - cmap = ls_sign_colourmap (); -***** error - ls_sign_colourmap ("foo"); -***** test - figure (); - ls_sign_colourmap (); - ls_sign_colourmap ("highlight"); - ls_sign_colourmap (colours); - close (); -***** error - ls_sign_colourmap (1, 2, 3); -***** error - ls_sign_colourmap ([1, 2, 3]); -***** error - ls_sign_colourmap ([1, 2], 1); -***** error - ls_sign_colourmap ([1, 2], "foo"); -***** test - cmap = ls_sign_colourmap ([1, 2]); - cmap = ls_sign_colourmap ([1; 2], "highlight"); - cmap = ls_sign_colourmap ([1; 2], colours); -***** demo - n = 100; - x = linspace (-2, 2, n); - y = linspace (-1, 3, n); - [XX, YY] = meshgrid (x, y); - phi = ls_genbasic (XX, YY, "sphere", [0, 1], 1); - figure (); - imagesc (x, y, phi); - set (gca (), "ydir", "normal"); - ls_sign_colourmap (); - colorbar (); - title ("Type 'sign'"); -***** demo - n = 100; - x = linspace (-2, 2, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - phi = ls_genbasic (XX, YY, "sphere", [0, 0], 1); - d = ls_signed_distance (phi, h); - F = YY .* exp (-10 * d.^2); - - figure (); + subplot (1, 2, 2); hold ("on"); - imagesc (x, x, F); + imagesc (x, x, phi); set (gca (), "ydir", "normal"); - ls_sign_colourmap ("highlight"); - colorbar (); - contour (XX, YY, phi, [0, 0], "k", "LineWidth", 2); + ls_sign_colourmap (); + contour (XX, YY, phi, [0, 0], "k"); hold ("off"); - title ("Type 'highlight'"); -10 tests, 10 passed, 0 known failure, 0 skipped -[inst/so_replay_descent.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_replay_descent.m -***** error - so_replay_descent (1); -***** error - so_replay_descent (1, 2, 3, 4); -***** error - so_replay_descent (1, 2, 0); -***** error - so_replay_descent (1, 2, 1.5); -***** error - so_replay_descent (1, 2, [2, 3]); -***** error - so_replay_descent (struct (), 2); -***** error - so_replay_descent ([2, 3], 2); -***** error <'fload' is not available> - pkg unload -nodeps parallel; - so_replay_descent ("foo", 2); -***** function x = compressionCheckStruct (s, data) - x = struct ("weight", data.p.weight, "cost", s.cost); -***** endfunction -***** function checkCompression (s, data, field) - assert (isfield (s, field)); - assert (getfield (s, field), compressionCheckStruct (s, data)); -***** endfunction -***** function s = compressState (s, data) - s.compressed = compressionCheckStruct (s, data); -***** endfunction -***** function s = uncompressState (s, data) - checkCompression (s, data, "compressed"); - s.uncompressed = compressionCheckStruct (s, data); -***** endfunction -***** function log = initialised (data) - log = data.log; - log.mashUp = [data.s.a, data.s.b]; -***** endfunction -***** function log = beforeStep (k, data) - log = data.log; - log.mashUp = [log.mashUp, k, data.s.vol]; - - if (data.checkUncompression) - checkCompression (data.s, data, "uncompressed"); - endif -***** endfunction -***** function log = direction (k, f, dJ, data) - log = data.log; - log.mashUp = [log.mashUp, k, mean(f), sum(f), dJ, data.s.integ]; -***** endfunction -***** function log = afterStep (k, t, s, data) - log = data.log; - log.mashUp = [log.mashUp, k, t, s.a, s.b, s.cost, data.s.cost]; - - if (data.checkUncompression) - checkCompression (s, data, "uncompressed"); - endif -***** endfunction -***** function log = finished (data) - log = data.log; - log.mashUp = [log.mashUp, data.s.cost, log.steps, log.costs]; -***** endfunction -***** function data = getData () - data = struct (); - data.p = so_init_params (false); - data.p.vol = 10; - data.p.weight = 50; - - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - data.g = struct ("x", x, "h", h); - - data = so_example_problem (data); - data.handler = struct ("initialised", @initialised, ... - "before_step", @beforeStep, ... - "direction", @direction, ... - "after_step", @afterStep, ... - "finished", @finished); - - % Unless explicitly set, do not expect compressed states. - data.checkUncompression = false; - - data.phi0 = ls_genbasic (data.g.x, "box", -3, 5); -***** endfunction -***** function data = getDataForCompression (uncompress) - data = getData (); - data.compress = struct (); - data.compress.save = struct ("state", @compressState); - data.compress.load = struct ("state", @uncompressState); - data.checkUncompression = uncompress; -***** endfunction -***** function compareResults (s1, l1, s2, l2) - assert (s2, s1); - assert (l2.mashUp, l1.mashUp); -***** endfunction -***** xtest - pkg load parallel; - - nSteps = 10; - baseData = getData (); - - f = tempname (); - data = so_save_descent (f, struct (), baseData); - [s1, l1] = so_run_descent (nSteps, data.phi0, data); - [s2, l2] = so_replay_descent (f, @getData); - unlink (f); - compareResults (s1, l1, s2, l2); - - f = tmpfile (); - data = so_save_descent (f, struct (), baseData); - [s1, l1] = so_run_descent (nSteps, data.phi0, data); - frewind (f); - [s2, l2] = so_replay_descent (f, @getData); - fclose (f); - compareResults (s1, l1, s2, l2); - - [pr, pw] = pipe (); - data = so_save_descent (pw, struct (), baseData); - [s1, l1] = so_run_descent (nSteps, data.phi0, data); - fclose (pw); - [s2, l2] = so_replay_descent (pr, @getData); - fclose (pr); - compareResults (s1, l1, s2, l2); -!!!!! known failure -structure has no member 'openFile' -***** xtest - pkg load parallel; - - baseData = getData (); - [pr, pw] = pipe (); - data = so_save_descent (pw, struct (), baseData); - data.cb.check_stop = @() true; - [s1, l1] = so_run_descent (1, data.phi0, data); - fclose (pw); - assert (l1.steps, 0); - [s2, l2] = so_replay_descent (pr, @getData); - fclose (pr); - compareResults (s1, l1, s2, l2); - - baseData = getData (); - [pr, pw] = pipe (); - data = so_save_descent (pw, struct (), baseData); - [s1, l1] = so_run_descent (1, data.phi0, data); - fclose (pw); - [s2, l2] = so_replay_descent (pr, @getData, 1); - fclose (pr); - compareResults (s1, l1, s2, l2); -!!!!! known failure -structure has no member 'openFile' -***** xtest - pkg load parallel; - - nStepsShort = 5; - nStepsLong = 10; - - baseData = getData (); - [prl, pwl] = pipe (); - data = so_save_descent (pwl, struct (), baseData); - [sl, ll] = so_run_descent (nStepsLong, data.phi0, data); - fclose (pwl); - - baseData = getData (); - [prs, pws] = pipe (); - data = so_save_descent (pws, struct (), baseData); - [ss, ls] = so_run_descent (nStepsShort, data.phi0, data); - fclose (pws); - - [s, l] = so_replay_descent (prl, @getData, nStepsShort); - fclose (prl); - compareResults (s, l, ss, ls); - - [s, l] = so_replay_descent (prs, @getData, nStepsLong); - fclose (prs); - compareResults (s, l, sl, ll); -!!!!! known failure -structure has no member 'openFile' -***** xtest - pkg load parallel; - - nSteps = 10; - [pr, pw] = pipe (); - - data = getDataForCompression (false); - data = so_save_descent (pw, struct (), data); - [s1, l1] = so_run_descent (nSteps, data.phi0, data); - fclose (pw); - - init = @(header) getDataForCompression (true); - [s2, l2] = so_replay_descent (pr, init); - fclose (pr); - - % No result comparison here, since the compress / uncompress - % functions introduced changes to the state structs. -!!!!! known failure -structure has no member 'openFile' -***** demo - pkg load parallel; - - data = struct (); - data.p = so_init_params (false); - data.p.vol = 10; - data.p.weight = 50; - - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - data.g = struct ("x", x, "h", h); - - data = so_example_problem (data); - phi0 = ls_genbasic (data.g.x, "box", -3, 7); - - printf ("Computing descent...\n"); - [pr, pw] = pipe (); - d = data; - d.handler = struct (); - d = so_save_descent (pw, struct (), d); - s = so_run_descent (5, phi0, d); - fclose (pw); - printf ("Final cost: %.6d\n", s.cost); - - printf ("\nNow replaying...\n"); - d = data; - d.p.verbose = true; - init = @() d; - s = so_replay_descent (pr, init); - fclose (pr); - printf ("Final cost: %.6d\n", s.cost); -warning: test: file /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_replay_descent.m leaked file descriptors -12 tests, 8 passed, 4 known failures, 0 skipped -[inst/ls_complement.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_complement.m -***** error - ls_complement () -***** error - ls_complement (1, 2) -***** test - n = 50; - x = linspace (-10, 10, n); - h = x(2) - x(1); - [XX, YY] = meshgrid (x, x); - - phi1 = (XX - 2).^2 + (YY - 2).^2 - 2^2; - phi2 = (XX + 2).^2 + (YY + 2).^2 - 2^2; - - assert (ls_disjoint (phi1, ls_complement (phi1))); - assert (ls_disjoint (phi2, ls_complement (phi2))); - - assert (~ls_disjoint (phi1, ls_complement (phi2))); - assert (~ls_disjoint (phi2, ls_complement (phi1))); - - sd1 = ls_signed_distance (ls_complement (phi1), h); - sd2 = ls_complement (ls_signed_distance (phi1, h)); - assert (sd1, sd2, sqrt (eps)); + axis ("equal"); 3 tests, 3 passed, 0 known failure, 0 skipped -[inst/ls_inside.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_inside.m -***** error - ls_inside () -***** error - ls_inside (1, 2) -***** test - assert (ls_inside ([1, 0, -1, 0, 1]), [false, false, true, false, false]); -***** test - if (exist ("signbit") == 5) - assert (ls_inside ([-0, 0]), [true, false]); - else - warning ("'signbit' function not available, skipping test."); - endif -4 tests, 4 passed, 0 known failure, 0 skipped [inst/ls_time_step.m] >>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_time_step.m ***** error @@ -4631,320 +3709,80 @@ contour (XX, YY, phit{2}, [0, 0], "k", "LineWidth", 2); hold ("off"); 9 tests, 9 passed, 0 known failure, 0 skipped -[inst/so_explore_descent.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_explore_descent.m -***** error - so_explore_descent (1); -***** error - so_explore_descent (1, 2, 3); -***** error - so_explore_descent (struct (), 2); -***** error - so_explore_descent ([2, 3], 2); -***** error <'fload' is not available> - pkg unload -nodeps parallel; - so_explore_descent ("foo", 2); -***** demo - pkg load parallel; - - data = struct (); - data.p = so_init_params (false); - data.p.vol = 10; - data.p.weight = 50; - - data.p.nSteps = 10; - data.figs = struct (); - data.figs.speed = figure (); - data.figs.exploreCosts = figure (); - - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - data.g = struct ("x", x, "h", h); - - data = so_example_problem (data); - phi0 = ls_genbasic (data.g.x, "box", -3, 7); - - printf ("Computing descent...\n"); - f = tmpfile (); - d = data; - d.handler = struct (); - d = so_save_descent (f, struct (), d); - s = so_run_descent (data.p.nSteps, phi0, d); - printf ("Final cost: %.6d\n", s.cost); - - printf ("\nNow replaying...\n"); - init = @() data; - frewind (f); - so_explore_descent (f, init); - fclose (f); -5 tests, 5 passed, 0 known failure, 0 skipped -[inst/ls_normalise.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_normalise.m -***** error - ls_normalise () -***** error - ls_normalise (1, 2, 3, 4) -***** test - h = 0.1; - zeroTol = 0.2; - phi = ones (4, 4); - phiEx = phi; - phi(2 : 3, 2 : 3) = [-eps, -0; 0, eps]; - phiEx(2 : 3, 2 : 3) = [-zeroTol*h, -zeroTol*h; zeroTol*h, zeroTol*h]; - phin = ls_normalise (phi, h, zeroTol); - if (exist ("signbit") == 5) - assert (phin, phiEx); - else - warning ("'signbit' function not available, skipping test."); - endif -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/so_init_params.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_init_params.m -***** error - so_init_params () -***** error - so_init_params (true, 1, 2) -***** error - so_init_params (true, 0); -***** error - so_init_params (true, 1.5); -***** test - p = so_init_params (true); -***** error <'pararrayfun' is not available> - pkg unload -nodeps parallel; - p = so_init_params (true, 2); -***** test - pkg load parallel; - p = so_init_params (true, 2); -7 tests, 7 passed, 0 known failure, 0 skipped -[inst/ls_check.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_check.m -***** error - ls_check (1, 2) -***** error - ls_check (1, 2, 3, 4) -***** error - ls_check (1, "inside", [1, 2]); -***** error - ls_check (1, "foo", true); -***** error - ls_check (1, NA, false); -***** test - n = 100; - x = linspace (-10, 10, n); - [XX, YY] = meshgrid (x, x); - - circ2 = (XX.^2 + YY.^2 < 2^2); - circ8 = (XX.^2 + YY.^2 < 8^2); - phi = (XX.^2 + YY.^2 - 5^2); - - assert (ls_check (phi, "inside", circ8)); - assert (ls_check (phi, "contain", circ2)); - assert (ls_check (phi, "outside", ~circ8)); - - assert (~ls_check (phi, "inside", circ2)); - assert (~ls_check (phi, "contain", circ8)); - assert (~ls_check (phi, "outside", circ8)); -6 tests, 6 passed, 0 known failure, 0 skipped -[inst/upwind_gradient_norm.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/upwind_gradient_norm.m -***** error - upwind_gradient_norm () -***** error - upwind_gradient_norm (1, 2, 3, 4) -***** error - upwind_gradient_norm ([1, 1], [2, 2], [3, 3]) -***** error - upwind_gradient_norm ([1, 1], [2, 2, 2]) -***** error - upwind_gradient_norm ([1, 1], [2, 2, 2], 5) -***** test - phi = [0, 2, 3]; - fPos = ones (size (phi)); - - % Propagate the original phi to the right. This should result - % in the *backward* difference to be used in the middle. - g = upwind_gradient_norm (phi); - assert (g(2), 2); - gp = upwind_gradient_norm (phi, fPos); - assert (gp, g); - gp = upwind_gradient_norm (phi, 0.5); - assert (gp, 2 * g); - gp = upwind_gradient_norm (phi, fPos, 0.5); - assert (gp, 2 * g); - - % Propagate to the left for the reverse effect. - g = upwind_gradient_norm (phi, -fPos); - assert (g(2), 1); +[inst/so_example_problem.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_example_problem.m +***** shared basicData + basicData = struct (); + basicData.p = so_init_params (true); + basicData.p.vol = 4; + basicData.p.weight = 10; - % Propagate -phi, which again turns everything around. - g = upwind_gradient_norm (-phi, fPos); - assert (g(2), 1); - g = upwind_gradient_norm (-phi, -fPos); - assert (g(2), 2); -***** test n = 50; - x = linspace (-1, 1, n); + x = linspace (-4, 5, n); h = x(2) - x(1); - [XX, YY, ZZ] = ndgrid (x, x, x); - - phi = XX.^2 + YY.^2 + ZZ.^2; - g = upwind_gradient_norm (phi, h); - - r = sqrt (phi); - assert (g, 2 * r, 0.1); -7 tests, 7 passed, 0 known failure, 0 skipped -[inst/ls_enforce.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_enforce.m + basicData.g = struct ("x", x, "h", h); ***** error - ls_enforce (1, 2) + so_example_problem (); ***** error - ls_enforce (1, 2, 3, 4) -***** error - ls_enforce (1, "inside", [1, 2]); -***** error - ls_enforce (1, "foo", true); -***** error - ls_enforce (1, NA, false); + so_example_problem (1, 2); +***** error + so_example_problem (1); ***** test - n = 100; - x = linspace (-10, 10, n); - [XX, YY] = meshgrid (x, x); - - circ2 = (XX.^2 + YY.^2 < 2^2); - circ8 = (XX.^2 + YY.^2 < 8^2); - phi = (XX.^2 + YY.^2 - 5^2); - - phi2 = ls_enforce (phi, "inside", circ8); - assert (ls_equal (phi2, phi)); - phi2 = ls_enforce (phi, "inside", circ2); - assert (ls_check (phi2, "inside", circ2)); - - phi2 = ls_enforce (phi, "contain", circ2); - assert (ls_equal (phi2, phi)); - phi2 = ls_enforce (phi, "contain", circ8); - assert (ls_check (phi2, "contain", circ8)); - - phi2 = ls_enforce (phi, "outside", ~circ8); - assert (ls_equal (phi2, phi)); - phi2 = ls_enforce (phi, "outside", ~circ2); - ls_check (phi2, "outside", ~circ2); - phi2 = ls_enforce (phi, "outside", circ2); - ls_check (phi2, "outside", circ2); -6 tests, 6 passed, 0 known failure, 0 skipped -[inst/so_run_descent.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_run_descent.m -***** shared data, phi0 - data = struct (); - data.p = so_init_params (false); - data.p.vol = 10; - data.p.weight = 50; - - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - data.g = struct ("x", x, "h", h); - - data = so_example_problem (data); - data.handler = struct (); + data = so_example_problem (basicData); + phi = ls_genbasic (data.g.x, "box", -2.5, 1.3); - phi0 = ls_genbasic (data.g.x, "box", -3, 5); -***** error - so_run_descent (1, 2); -***** error - so_run_descent (1, 2, 3, 4); -***** error - so_run_descent (0, phi0, data); -***** error - so_run_descent (1.5, phi0, data); -***** error - so_run_descent ([2, 3], phi0, data); -***** error - d = data; - d.p.descent.initialStep = 0; - so_run_descent (1, phi0, d); + [a, b] = data.util.bounds (phi, data); + assert (a, -2.5, sqrt (eps)); + assert (b, 1.3, sqrt (eps)); ***** test - nSteps = 12; + data = so_example_problem (basicData); - [s, descentLog] = so_run_descent (nSteps, phi0, data); - assert (s.cost, 0, 1e-3); - assert (length (descentLog.costs), nSteps + 1); - assert (descentLog.costs(end), s.cost); - %semilogy (descentLog.costs, "o"); -***** test - tol = 5e-2; - nSteps = 100; - d = data; - d.cb.check_stop = @(data) (data.cost < tol); + phi = ls_genbasic (data.g.x, "box", -2, 2); + s0 = data.cb.update_state (phi, data); - [s, descentLog] = so_run_descent (nSteps, phi0, d); - assert (s.cost < tol); - printf ("Steps needed: %d\n", descentLog.steps); - assert (descentLog.steps < nSteps); -Steps needed: 8 -***** demo - data = struct (); - data.p = so_init_params (true); - data.p.vol = 10; - data.p.weight = 50; + phi = ls_genbasic (data.g.x, "box", -3, 3); + s1 = data.cb.update_state (phi, data); - n = 100; - x = linspace (-10, 10, n); - h = x(2) - x(1); - data.g = struct ("x", x, "h", h); + phi = ls_genbasic (data.g.x, "box", -1, 1); + s2 = data.cb.update_state (phi, data); - % Look at so_example_problem to see how the callbacks - % and the plotting handler is defined. - data = so_example_problem (data); + phi = ls_genbasic (data.g.x, "box", -1, 3); + s3 = data.cb.update_state (phi, data); - phi0 = ls_genbasic (data.g.x, "box", -3, 7); - [s, descentLog] = so_run_descent (5, phi0, data); + phi = ls_genbasic (data.g.x, "box", -3, 1); + s4 = data.cb.update_state (phi, data); - figure (); - semilogy (0 : descentLog.steps, descentLog.costs, "o"); - title ("Cost Descrease"); + assert (all ([s0.cost, s1.cost, s2.cost, s3.cost, s4.cost] >= 0)); + assert (s0.cost, 0, 1e-1); + assert (s1.cost > s3.cost); + assert (s1.cost > s4.cost); + assert (s2.cost > s3.cost); + assert (s2.cost > s4.cost); + assert (s3.cost > s0.cost); + assert (s4.cost > s0.cost); +***** function testDeriv (a, b, data) + phi = ls_genbasic (data.g.x, "box", a, b); + data.s = data.cb.update_state (phi, data); + [f, dJ] = data.cb.get_direction (data); + assert (dJ < 0); - printf ("\nFinal interval: [%.6d, %.6d]\n", s.a, s.b); - printf ("Final cost: %.6d\n", s.cost); -8 tests, 8 passed, 0 known failure, 0 skipped -[inst/ls_absolute_geom.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_absolute_geom.m -***** error - ls_absolute_geom (1, 2); -***** error - ls_absolute_geom (1, 2, 3, 4); -***** error - x = [-1, 1]; - [XX, YY, ZZ] = ndgrid (x); - ls_absolute_geom (struct (), XX, YY); -***** error - ls_absolute_geom (struct (), [-1, 0, 1], [0, 0, 0]); -***** error - ls_absolute_geom (struct (), zeros (3, 2), zeros (2, 2)); -5 tests, 5 passed, 0 known failure, 0 skipped -[inst/ls_issubset.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_issubset.m -***** error - ls_issubset (1) -***** error - ls_issubset (1, 2, 3) -***** error - ls_issubset (1, [1, 2]) -***** test - n = 50; - x = linspace (-10, 10, n); - [XX, YY] = meshgrid (x, x); + dt = 5e-3; + dists = ls_solve_stationary (phi, f, data.g.h); + phip = ls_extract_solution (dt, dists, phi, f); + sp = data.cb.update_state (phip, data); - phi1 = XX.^2 + YY.^2 - 1^2; - phi2 = XX.^2 + YY.^2 - 5^2; - phi3 = XX.^2 + YY.^2 - 8^2; - phi4 = (XX - 3).^2 + YY.^2 - 3^2; + assert (sp.cost < data.s.cost); + relErr = abs (sp.cost - (data.s.cost + dt * dJ)) / data.s.cost; + assert (relErr < 0.1); +***** endfunction +***** test + data = so_example_problem (basicData); - assert (ls_issubset (phi1, phi2)); - assert (ls_issubset (phi4, phi3)); - assert (~ls_issubset (phi4, phi2)); -4 tests, 4 passed, 0 known failure, 0 skipped + testDeriv (-1, 1, data); + testDeriv (-3, 3, data); + testDeriv (-1, 3, data); + testDeriv (-3, 1, data); +6 tests, 6 passed, 0 known failure, 0 skipped [inst/ls_extract_solution.m] >>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_extract_solution.m ***** error @@ -5006,7 +3844,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5014,7 +3852,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5022,7 +3860,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5030,7 +3868,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5038,7 +3876,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5046,7 +3884,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5054,7 +3892,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5062,7 +3900,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5070,7 +3908,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5078,7 +3916,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5086,7 +3924,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5094,7 +3932,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5102,7 +3940,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5110,7 +3948,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5118,7 +3956,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5126,7 +3964,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5134,7 +3972,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5142,7 +3980,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5150,7 +3988,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5158,7 +3996,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5166,7 +4004,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5174,7 +4012,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5182,7 +4020,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.088561 to 0.090209 warning: called from @@ -5190,7 +4028,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5198,7 +4036,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5206,7 +4044,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5214,7 +4052,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5222,7 +4060,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5230,7 +4068,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5238,7 +4076,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5246,7 +4084,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5254,7 +4092,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5262,7 +4100,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5270,7 +4108,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5278,7 +4116,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5286,7 +4124,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5294,7 +4132,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5302,7 +4140,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5310,7 +4148,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5318,7 +4156,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5326,7 +4164,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5334,7 +4172,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5342,7 +4180,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5350,7 +4188,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5358,7 +4196,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5366,7 +4204,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5374,7 +4212,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 warning: increased distance in fast marching 0.105699 to 0.105896 warning: called from @@ -5382,7 +4220,7 @@ ls_signed_distance at line 45 column 5 __test__ at line 16 column 7 test at line 677 column 11 - /tmp/tmp.eHrQoVxzF1 at line 254 column 31 + /tmp/tmp.nqoToXK40a at line 142 column 31 ***** demo n = 100; @@ -5417,96 +4255,142 @@ phi0 = ls_genbasic (XX, YY, "sphere", [0, 0], 3); ls_animate_evolution (phi0, F, h, linspace (0, 3, 40), 0.01); 8 tests, 8 passed, 0 known failure, 0 skipped -[inst/ls_union.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_union.m +[inst/so_save_descent.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_save_descent.m ***** error - ls_union () -***** error - ls_union (1, -2, [1, 2]) + so_save_descent (1, 2); +***** error + so_save_descent (1, 2, 3, 4); +***** error + so_save_descent (1, 2, 3); +***** error + so_save_descent (struct (), 2, struct ()); +***** error + so_save_descent ([2, 3], 2, struct ()); +***** error <'fsave' is not available> + pkg unload -nodeps parallel; + so_save_descent ("foo", 2, struct ()); ***** test - n = 50; - x = linspace (-10, 10, n); - [XX, YY] = meshgrid (x, x); - - phi1 = (XX - 3).^2 + (YY - 3).^2 - 2^2; - phi2 = (XX + 3).^2 + (YY + 3).^2 - 2^2; - phi3 = XX.^2 + YY.^2 - 2^2; - - phi = ls_union (phi1, phi2, phi3); - assert (ls_issubset (phi1, phi)); - assert (ls_issubset (phi2, phi)); - assert (ls_issubset (phi3, phi)); - - assert (ls_union (phi3), phi3); -***** demo - n = 100; - x = linspace (-7, 7, n); - [XX, YY] = meshgrid (x, x); - - phi1 = (XX - 2 * cos (7/6 * pi)).^2 + (YY - 2 * sin (7/6 * pi)).^2 - 3^2; - phi2 = (XX - 2 * cos (11/6 * pi)).^2 + (YY - 2 * sin (11/6 * pi)).^2 - 3^2; - phi3 = XX.^2 + (YY - 2).^2 - 3^2; - phi = ls_union (phi1, phi2, phi3); + pkg load parallel; + so_save_descent ("foo", 2, struct ()); + so_save_descent (5, 2, struct ()); +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/ls_init_narrowband.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_init_narrowband.m +***** error + ls_init_narrowband () +***** error + ls_init_narrowband (1, 2, 3) +***** test + assert (ls_init_narrowband ([]), []); +***** test + n = 10; + x = linspace (-2, 2, n); + h = x(2) - x(1); + phi = abs (x) - 1; - figure (); - subplot (1, 2, 1); - hold ("on"); - contour (XX, YY, phi1, [0, 0], "k"); - contour (XX, YY, phi2, [0, 0], "k"); - contour (XX, YY, phi3, [0, 0], "k"); - hold ("off"); - axis ("equal"); + d = ls_init_narrowband (phi, h); + where = ~isna (d); + assert (d(where), phi(where), sqrt (eps)); +***** test + n = 50; + x = linspace (-2, 2, n); + h = x(2) - x(1); + [XX, YY, ZZ] = ndgrid (x); + RRsq = XX.^2 + YY.^2 + ZZ.^2; + phi = RRsq - 1; - subplot (1, 2, 2); - hold ("on"); - imagesc (x, x, phi); - set (gca (), "ydir", "normal"); - ls_sign_colourmap (); - contour (XX, YY, phi, [0, 0], "k"); - hold ("off"); - axis ("equal"); -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/ls_intersect.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_intersect.m + d = ls_init_narrowband (phi, h); + where = ~isna (d); + assert (d(where), sqrt (RRsq(where)) - 1, h / 3); +***** test + tol = sqrt (eps); + assert (ls_init_narrowband ([Inf, -Inf, Inf]), [0.5, -0.5, 0.5], tol); + assert (ls_init_narrowband ([Inf, -1, Inf]), [1, 0, 1], tol); + %assert (ls_init_narrowband ([1, -Inf, 1]), [0, 1, 0], tol); +***** function dh = distToSegment (x, a, b) + dir = b - a; + dir /= norm (dir); + proj = dot (x - a, dir); + if (proj < 0) + dh = norm (x - a); + elseif (proj > 1) + dh = norm (x - b); + else + dh = norm (x - (a + proj * dir)); + endif +***** endfunction +***** function dh = distToLine (x, c) + assert (c(1, 1), 0); + dh = Inf; + for i = 2 : size (c, 2) - 1 + dh = min (dh, distToSegment (x, c(:, i), c(:, i + 1))); + endfor +***** endfunction +***** function dh = distOfContoursAsym (c1, c2) + dh = 0; + for i = 2 : size (c1, 2) + dh = max (dh, distToLine (c1(:, i), c2)); + endfor +***** endfunction +***** function dh = distOfContours (c1, c2) + dh = max (distOfContoursAsym (c1, c2), distOfContoursAsym (c2, c1)); +***** endfunction +***** test + phis = ls_get_tests (); + printf ("Comparing contours for %d cases...\n", length (phis)); + for i = 1 : length (phis) + d = ls_init_narrowband (phis{i}); + c1 = contourc (d, [0, 0]); + if (size (c1, 2) > 0) + c2 = contourc (phis{i}, [0, 0]); + dh = distOfContours (c1, c2); + printf ("i = %d: dist = %f\n", i, dh); + if (isfinite (dh)) + assert (dh, 0, 1e-1); + endif + endif + endfor +Comparing contours for 6 cases... +i = 1: dist = 0.060660 +i = 2: dist = Inf +i = 4: dist = 0.039039 +i = 5: dist = 0.085786 +i = 6: dist = 0.085786 +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/ls_setxor.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_setxor.m ***** error - ls_intersect () -***** error - ls_intersect (1, -2, [1, 2]) + ls_setxor (1) +***** error + ls_setxor (1, 2, 3) +***** error + ls_setxor (1, [1, 2]) ***** test + assert (ls_equal (ls_setxor ([-1, -1, Inf], [1, -1, -Inf]), [-1, 1, -1])); n = 50; x = linspace (-10, 10, n); + h = x(2) - x(1); [XX, YY] = meshgrid (x, x); - phi1 = (XX - 2).^2 + (YY - 2).^2 - 2^2; - phi2 = (XX + 2).^2 + (YY + 2).^2 - 2^2; - phi3 = XX.^2 + YY.^2 - 2^2; - - assert (ls_isempty (ls_intersect (phi1, phi2))); - assert (ls_intersect (phi3), phi3); - - phi = ls_intersect (phi1, phi3); - assert (~ls_isempty (phi)); - assert (ls_issubset (phi, phi1) && ls_issubset (phi, phi3)); + phi1 = XX.^2 + YY.^2 - 8^2; + phi2 = XX.^2 + YY.^2 - 5^2; - phi = ls_intersect (phi2, phi3); - assert (~ls_isempty (phi)); - assert (ls_issubset (phi, phi2) && ls_issubset (phi, phi3)); + assert (ls_equal (ls_setdiff (phi1, phi2), ls_setxor (phi1, phi2))); ***** demo n = 100; x = linspace (-7, 7, n); [XX, YY] = meshgrid (x, x); - phi1 = (XX - 2 * cos (7/6 * pi)).^2 + (YY - 2 * sin (7/6 * pi)).^2 - 3^2; - phi2 = (XX - 2 * cos (11/6 * pi)).^2 + (YY - 2 * sin (11/6 * pi)).^2 - 3^2; - phi3 = XX.^2 + (YY - 2).^2 - 3^2; - phi = ls_intersect (phi1, phi2, phi3); + phi1 = (XX - 2).^2 + YY.^2 - 3^2; + phi2 = (XX + 2).^2 + YY.^2 - 3^2; + phi = ls_setxor (phi1, phi2); figure (); subplot (1, 2, 1); hold ("on"); contour (XX, YY, phi1, [0, 0], "k"); contour (XX, YY, phi2, [0, 0], "k"); - contour (XX, YY, phi3, [0, 0], "k"); hold ("off"); axis ("equal"); @@ -5518,25 +4402,29 @@ contour (XX, YY, phi, [0, 0], "k"); hold ("off"); axis ("equal"); -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/ls_isempty.m] ->>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_isempty.m +4 tests, 4 passed, 0 known failure, 0 skipped +[inst/ls_issubset.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_issubset.m ***** error - ls_isempty () + ls_issubset (1) ***** error - ls_isempty (1, 2) + ls_issubset (1, 2, 3) +***** error + ls_issubset (1, [1, 2]) ***** test n = 50; x = linspace (-10, 10, n); [XX, YY] = meshgrid (x, x); - phi1 = (XX - 2).^2 + (YY - 2).^2 - 2^2; - phi2 = (XX + 2).^2 + (YY + 2).^2 - 2^2; + phi1 = XX.^2 + YY.^2 - 1^2; + phi2 = XX.^2 + YY.^2 - 5^2; + phi3 = XX.^2 + YY.^2 - 8^2; + phi4 = (XX - 3).^2 + YY.^2 - 3^2; - assert (~ls_isempty (phi1) && ~ls_isempty (phi2)); - assert (ls_isempty (ls_intersect (phi1, phi2))); - assert (~ls_isempty (ls_union (phi1, phi2))); -3 tests, 3 passed, 0 known failure, 0 skipped + assert (ls_issubset (phi1, phi2)); + assert (ls_issubset (phi4, phi3)); + assert (~ls_issubset (phi4, phi2)); +4 tests, 4 passed, 0 known failure, 0 skipped [inst/ls_nb_from_geom.m] >>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_nb_from_geom.m ***** error @@ -5612,6 +4500,1068 @@ hold ("off"); colorbar (); 7 tests, 7 passed, 0 known failure, 0 skipped +[inst/so_run_descent.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_run_descent.m +***** shared data, phi0 + data = struct (); + data.p = so_init_params (false); + data.p.vol = 10; + data.p.weight = 50; + + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + data.g = struct ("x", x, "h", h); + + data = so_example_problem (data); + data.handler = struct (); + + phi0 = ls_genbasic (data.g.x, "box", -3, 5); +***** error + so_run_descent (1, 2); +***** error + so_run_descent (1, 2, 3, 4); +***** error + so_run_descent (0, phi0, data); +***** error + so_run_descent (1.5, phi0, data); +***** error + so_run_descent ([2, 3], phi0, data); +***** error + d = data; + d.p.descent.initialStep = 0; + so_run_descent (1, phi0, d); +***** test + nSteps = 12; + + [s, descentLog] = so_run_descent (nSteps, phi0, data); + assert (s.cost, 0, 1e-3); + assert (length (descentLog.costs), nSteps + 1); + assert (descentLog.costs(end), s.cost); + %semilogy (descentLog.costs, "o"); +***** test + tol = 5e-2; + nSteps = 100; + d = data; + d.cb.check_stop = @(data) (data.cost < tol); + + [s, descentLog] = so_run_descent (nSteps, phi0, d); + assert (s.cost < tol); + printf ("Steps needed: %d\n", descentLog.steps); + assert (descentLog.steps < nSteps); +Steps needed: 8 +***** demo + data = struct (); + data.p = so_init_params (true); + data.p.vol = 10; + data.p.weight = 50; + + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + data.g = struct ("x", x, "h", h); + + % Look at so_example_problem to see how the callbacks + % and the plotting handler is defined. + data = so_example_problem (data); + + phi0 = ls_genbasic (data.g.x, "box", -3, 7); + [s, descentLog] = so_run_descent (5, phi0, data); + + figure (); + semilogy (0 : descentLog.steps, descentLog.costs, "o"); + title ("Cost Descrease"); + + printf ("\nFinal interval: [%.6d, %.6d]\n", s.a, s.b); + printf ("Final cost: %.6d\n", s.cost); +8 tests, 8 passed, 0 known failure, 0 skipped +[inst/so_init_params.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_init_params.m +***** error + so_init_params () +***** error + so_init_params (true, 1, 2) +***** error + so_init_params (true, 0); +***** error + so_init_params (true, 1.5); +***** test + p = so_init_params (true); +***** error <'pararrayfun' is not available> + pkg unload -nodeps parallel; + p = so_init_params (true, 2); +***** test + pkg load parallel; + p = so_init_params (true, 2); +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/so_replay_descent.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_replay_descent.m +***** error + so_replay_descent (1); +***** error + so_replay_descent (1, 2, 3, 4); +***** error + so_replay_descent (1, 2, 0); +***** error + so_replay_descent (1, 2, 1.5); +***** error + so_replay_descent (1, 2, [2, 3]); +***** error + so_replay_descent (struct (), 2); +***** error + so_replay_descent ([2, 3], 2); +***** error <'fload' is not available> + pkg unload -nodeps parallel; + so_replay_descent ("foo", 2); +***** function x = compressionCheckStruct (s, data) + x = struct ("weight", data.p.weight, "cost", s.cost); +***** endfunction +***** function checkCompression (s, data, field) + assert (isfield (s, field)); + assert (getfield (s, field), compressionCheckStruct (s, data)); +***** endfunction +***** function s = compressState (s, data) + s.compressed = compressionCheckStruct (s, data); +***** endfunction +***** function s = uncompressState (s, data) + checkCompression (s, data, "compressed"); + s.uncompressed = compressionCheckStruct (s, data); +***** endfunction +***** function log = initialised (data) + log = data.log; + log.mashUp = [data.s.a, data.s.b]; +***** endfunction +***** function log = beforeStep (k, data) + log = data.log; + log.mashUp = [log.mashUp, k, data.s.vol]; + + if (data.checkUncompression) + checkCompression (data.s, data, "uncompressed"); + endif +***** endfunction +***** function log = direction (k, f, dJ, data) + log = data.log; + log.mashUp = [log.mashUp, k, mean(f), sum(f), dJ, data.s.integ]; +***** endfunction +***** function log = afterStep (k, t, s, data) + log = data.log; + log.mashUp = [log.mashUp, k, t, s.a, s.b, s.cost, data.s.cost]; + + if (data.checkUncompression) + checkCompression (s, data, "uncompressed"); + endif +***** endfunction +***** function log = finished (data) + log = data.log; + log.mashUp = [log.mashUp, data.s.cost, log.steps, log.costs]; +***** endfunction +***** function data = getData () + data = struct (); + data.p = so_init_params (false); + data.p.vol = 10; + data.p.weight = 50; + + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + data.g = struct ("x", x, "h", h); + + data = so_example_problem (data); + data.handler = struct ("initialised", @initialised, ... + "before_step", @beforeStep, ... + "direction", @direction, ... + "after_step", @afterStep, ... + "finished", @finished); + + % Unless explicitly set, do not expect compressed states. + data.checkUncompression = false; + + data.phi0 = ls_genbasic (data.g.x, "box", -3, 5); +***** endfunction +***** function data = getDataForCompression (uncompress) + data = getData (); + data.compress = struct (); + data.compress.save = struct ("state", @compressState); + data.compress.load = struct ("state", @uncompressState); + data.checkUncompression = uncompress; +***** endfunction +***** function compareResults (s1, l1, s2, l2) + assert (s2, s1); + assert (l2.mashUp, l1.mashUp); +***** endfunction +***** xtest + pkg load parallel; + + nSteps = 10; + baseData = getData (); + + f = tempname (); + data = so_save_descent (f, struct (), baseData); + [s1, l1] = so_run_descent (nSteps, data.phi0, data); + [s2, l2] = so_replay_descent (f, @getData); + unlink (f); + compareResults (s1, l1, s2, l2); + + f = tmpfile (); + data = so_save_descent (f, struct (), baseData); + [s1, l1] = so_run_descent (nSteps, data.phi0, data); + frewind (f); + [s2, l2] = so_replay_descent (f, @getData); + fclose (f); + compareResults (s1, l1, s2, l2); + + [pr, pw] = pipe (); + data = so_save_descent (pw, struct (), baseData); + [s1, l1] = so_run_descent (nSteps, data.phi0, data); + fclose (pw); + [s2, l2] = so_replay_descent (pr, @getData); + fclose (pr); + compareResults (s1, l1, s2, l2); +!!!!! known failure +structure has no member 'openFile' +***** xtest + pkg load parallel; + + baseData = getData (); + [pr, pw] = pipe (); + data = so_save_descent (pw, struct (), baseData); + data.cb.check_stop = @() true; + [s1, l1] = so_run_descent (1, data.phi0, data); + fclose (pw); + assert (l1.steps, 0); + [s2, l2] = so_replay_descent (pr, @getData); + fclose (pr); + compareResults (s1, l1, s2, l2); + + baseData = getData (); + [pr, pw] = pipe (); + data = so_save_descent (pw, struct (), baseData); + [s1, l1] = so_run_descent (1, data.phi0, data); + fclose (pw); + [s2, l2] = so_replay_descent (pr, @getData, 1); + fclose (pr); + compareResults (s1, l1, s2, l2); +!!!!! known failure +structure has no member 'openFile' +***** xtest + pkg load parallel; + + nStepsShort = 5; + nStepsLong = 10; + + baseData = getData (); + [prl, pwl] = pipe (); + data = so_save_descent (pwl, struct (), baseData); + [sl, ll] = so_run_descent (nStepsLong, data.phi0, data); + fclose (pwl); + + baseData = getData (); + [prs, pws] = pipe (); + data = so_save_descent (pws, struct (), baseData); + [ss, ls] = so_run_descent (nStepsShort, data.phi0, data); + fclose (pws); + + [s, l] = so_replay_descent (prl, @getData, nStepsShort); + fclose (prl); + compareResults (s, l, ss, ls); + + [s, l] = so_replay_descent (prs, @getData, nStepsLong); + fclose (prs); + compareResults (s, l, sl, ll); +!!!!! known failure +structure has no member 'openFile' +***** xtest + pkg load parallel; + + nSteps = 10; + [pr, pw] = pipe (); + + data = getDataForCompression (false); + data = so_save_descent (pw, struct (), data); + [s1, l1] = so_run_descent (nSteps, data.phi0, data); + fclose (pw); + + init = @(header) getDataForCompression (true); + [s2, l2] = so_replay_descent (pr, init); + fclose (pr); + + % No result comparison here, since the compress / uncompress + % functions introduced changes to the state structs. +!!!!! known failure +structure has no member 'openFile' +***** demo + pkg load parallel; + + data = struct (); + data.p = so_init_params (false); + data.p.vol = 10; + data.p.weight = 50; + + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + data.g = struct ("x", x, "h", h); + + data = so_example_problem (data); + phi0 = ls_genbasic (data.g.x, "box", -3, 7); + + printf ("Computing descent...\n"); + [pr, pw] = pipe (); + d = data; + d.handler = struct (); + d = so_save_descent (pw, struct (), d); + s = so_run_descent (5, phi0, d); + fclose (pw); + printf ("Final cost: %.6d\n", s.cost); + + printf ("\nNow replaying...\n"); + d = data; + d.p.verbose = true; + init = @() d; + s = so_replay_descent (pr, init); + fclose (pr); + printf ("Final cost: %.6d\n", s.cost); +warning: test: file /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_replay_descent.m leaked file descriptors +12 tests, 8 passed, 4 known failures, 0 skipped +[inst/ls_distance_fcn.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_distance_fcn.m +***** error + ls_distance_fcn () +***** error + ls_distance_fcn (1, 2, 3) +***** test + assert (ls_distance_fcn ([]), []); +***** test + n = 10; + x = linspace (-2, 2, n); + h = x(2) - x(1); + phi = abs (x) - 1; + + d = ls_distance_fcn (phi, h); + assert (d, max (phi, 0), sqrt (eps)); +***** test + n = 50; + x = linspace (-2, 2, n); + h = x(2) - x(1); + [XX, YY, ZZ] = ndgrid (x); + RRsq = XX.^2 + YY.^2 + ZZ.^2; + phi = RRsq - 1; + + d = ls_distance_fcn (phi, h); + assert (d, max (sqrt (RRsq) - 1, 0), h); +***** xtest + n = 500; + x = linspace (-10, 10, n); + h = x(2) - x(1); + + [XX, YY] = meshgrid (x, x); + phi = ls_genbasic (XX, YY, "sphere", [0, 0], 8); + + id = tic (); + d = ls_distance_fcn (phi, h); + time1 = toc (id); + + id = tic (); + sd = ls_signed_distance (phi, h); + time2 = toc (id); + + assert (d, max (sd, 0), sqrt (eps)); + printf ("ls_distance_fcn faster than ls_signed_distance by %.1f%%\n", ... + 100 * ((time2 - time1) / time2)); + assert (time1 < time2); +ls_distance_fcn faster than ls_signed_distance by 33.4% +***** test + phis = ls_get_tests (); + for i = 1 : length (phis) + phi = ls_normalise (phis{i}); + d = ls_distance_fcn (phi); + sd = ls_signed_distance (phi); + assert (d, max (sd, 0), sqrt (eps)); + endfor +***** demo + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + phi = ls_genbasic (XX, YY, "sphere", [0, 0], [8, 5]); + d = ls_distance_fcn (phi, h); + + figure (); + mesh (XX, YY, d); + view ([45, 45]); +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/fastmarching.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/fastmarching.m +***** error + fastmarching () +***** error + fastmarching (1, 2, 3, 4) +***** error + [a, b] = fastmarching (1, 2) +***** error + fastmarching ([1, 2], [1; 2]) +***** error + fastmarching ([1, 2], [1; 2], [1, 2]) +***** error + fastmarching ([NA, 1], [0, 5]); +***** test + n = 600; + x = linspace (0, 1, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + u0 = NA (n, n); + u0(2 : end - 1, 2 : end - 1) = Inf; + u0(1, 1) = 0; + f = 1 + YY; + u = fastmarching (u0, h * f); + + % Length of vertical side: integrate (1 + y, y, 0, x) + vertLength = @(x) x/2 .* (x + 2); + + % Speed difference at top and bottom, gives where the + % paths will meet on the bottom side. + % solve (x * fBot = fTop + (1 - x) * fBot, x) + fTop = mean (f(1, :)); + fBot = mean (f(end, :)); + xMeet = (fTop + fBot) / 2 / fBot; + botRow = vertLength (1) + fBot * x; + where = (x > xMeet); + botRow(where) = vertLength (1) + 1 + fBot * (1 - x(where)); + + assert (u(1, :), x, sqrt (eps)); + assert (u(:, 1), vertLength (x'), 1e-3); + assert (u(:, end), 1 + vertLength (x'), 1e-3); + assert (u(end, :), botRow, 1e-3); +***** test + n = 1100; + x = linspace (0, 1, n); + h = x(2) - x(1); + + obst1 = round (0.5 / h); + obst2 = round (0.75 / h); + s1 = round (0.2 / h); + s1val = 1; + s2 = round (0.9 / h); + s2val = -1; + + u0 = NA (n, 1); + u0([obst1, obst2]) = Inf; + u0([s1, s2]) = [s1val, s2val]; + f = ones (size (u0)); + g0 = NA (size (u0)); + g0([s1, s2]) = [s1val, s2val]; + + [u, g] = fastmarching (u0, g0, f * h); + + gDesired = NA (size (u0)); + gDesired(1 : obst1 - 1) = s1val; + gDesired(obst2 + 1 : end) = s2val; + assert (g, gDesired, sqrt (eps)); + + uDesired = NA (size (u0)); + uDesired([obst1, obst2]) = Inf; + uDesired(1 : obst1 - 1) = s1val + abs (s1 * h - x(1 : obst1 - 1)); + uDesired(obst2 + 1 : end) = s2val + abs (s2 * h - x(obst2 + 1 : end)); + assert (u, uDesired, 1e-3); +***** test + assert (fastmarching ([], []), []); +***** test + n = 42; + r = 1; + R = 2; + x = linspace (-R, R, n); + h = x(2) - x(1); + + [XX, YY, ZZ] = ndgrid (x); + RR = sqrt (XX.^2 + YY.^2 + ZZ.^2); + PPhi = NA (size (XX)); + for i = 1 : numel (PPhi) + pt = [XX(i), YY(i), ZZ(i)]; + PPhi(i) = acos (dot (pt, [0, 0, 1]) / norm (pt)); + endfor + + initial = (RR < r); + u0 = NA (size (XX)); + u0(initial) = 0; + g0 = NA (size (XX)); + g0(initial) = PPhi(initial); + f = ones (size (u0)); + [u, g] = fastmarching (u0, g0, h * f); + + assert (u(~initial), RR(~initial) - r, 1e-1); + assert (g(~initial), PPhi(~initial), 2e-1); +***** function [dx, dy] = gradient (fcn, h) + ext = NA (size (fcn) + 2); + ext(2 : end - 1, 2 : end - 1) = fcn; + ext(:, 1) = 2 * ext(:, 2) - ext(:, 3); + ext(:, end) = 2 * ext(:, end - 1) - ext(:, end - 2); + ext(1, :) = 2 * ext(2, :) - ext(3, :); + ext(end, :) = 2 * ext(end - 1, :) - ext(end - 2, :); + dx = (ext(2 : end - 1, 3 : end) - ext(2 : end - 1, 1 : end - 2)) / (2 * h); + dy = (ext(3 : end, 2 : end - 1) - ext(1 : end - 2, 2 : end - 1)) / (2 * h); +***** endfunction +***** test + n = 1000; + x = linspace (-2, 2, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + phi0 = 2 * XX.^2 + 0.4 * YY.^2 - 1; + initial = (phi0 < 0); + %contour (XX, YY, phi0, [0, 0], "r"); + + f = ones (size (XX)); + u0 = NA (size (XX)); + u0(initial) = 0; + g0 = NA (size (XX)); + g0(initial) = sin (atan2 (YY(initial), XX(initial))); + + [u, g] = fastmarching (u0, g0, h * f); + + [dxu, dyu] = gradient (u, h); + [dxg, dyg] = gradient (g, h); + + % We only verify the mean error here, since there tend + % to be lower-dimensional lines on which the error is + % large while it is very low otherwise. + err = abs (dxu .* dxg + dyu .* dyg); + assert (mean (err(initial)), 0, 1e-3); +***** test + u0 = [1.257221, NA, NA; Inf, 0.275128, 0.433001]; + f = [NA, 0.85714, 0.66667; NA, NA, NA]; + u = fastmarching (u0, f); +warning: increased distance in fast marching 1.121446 to 1.131670 +warning: called from + fastmarching at line 110 column 19 + __test__ at line 5 column 5 + test at line 677 column 11 + /tmp/tmp.nqoToXK40a at line 222 column 31 + +***** test + u0 = [0, NA; Inf, 2]; + f = ones (size (u0)); + u = fastmarching (u0, f); + assert (u(1, 2), 1, sqrt (eps)); +warning: found too far alive point in fast marching, d = -8.000000 +warning: called from + fastmarching at line 110 column 19 + __test__ at line 5 column 5 + test at line 677 column 11 + /tmp/tmp.nqoToXK40a at line 222 column 31 + +warning: found too far alive point in fast marching, d = -8.000000 +warning: called from + fastmarching at line 110 column 19 + __test__ at line 5 column 5 + test at line 677 column 11 + /tmp/tmp.nqoToXK40a at line 222 column 31 + +***** test + u0 = [0, NA, NA, NA, 0.1; ... + Inf, Inf, Inf, Inf, Inf; ... + 0.1, NA, NA, NA, 0]; + f = ones (size (u0)); + u = fastmarching (u0, f); + + uExpected = [0, 1, 2, 1.1, 0.1; ... + Inf, Inf, Inf, Inf, Inf; ... + 0.1, 1.1, 2, 1, 0]; + assert (u, uExpected, sqrt (eps)); +***** xtest + ns = [101, 201, 501, 1001, 2001]; + realNs = NA (size (ns)); + times = NA (size (ns)); + for i = 1 : length (ns) + nMid = (ns(i) + 1) / 2; + assert (nMid, round (nMid)); + u0 = NA (ns(i), ns(i)); + u0(nMid, nMid) = 0; + f = ones (size (u0)); + realNs(i) = numel (u0); + + old = cputime (); + u = fastmarching (u0, f); + new = cputime (); + times(i) = new - old; + + printf ("n = %4d: t = %6.3f s\n", ns(i), times(i)); + endfor + + nLogN = realNs .* log (realNs); + p = polyfit (log (realNs), log (times), 1); + pLogN = polyfit (log(nLogN), log (times), 1); + printf ("Exponents:\n O(n): %4.2f\n O(n log n): %4.2f\n", ... + p(1), pLogN(1)); + assert (p(1), 1, 1e-1); + assert (pLogN(1), 1, 1e-1); +n = 101: t = 0.031 s +n = 201: t = 0.126 s +n = 501: t = 0.793 s +n = 1001: t = 3.501 s +n = 2001: t = 15.067 s +Exponents: + O(n): 1.03 + O(n log n): 0.95 +***** test + T = 1.6; + timeSteps = 10000; + L = 2; + gridSteps = 10000; + eps = 1e-4; + floorValue = -1/2; + tol = 7e-2; + + t = linspace (0, T, timeSteps); + dt = t(2) - t(1); + x = linspace (-L/2, L/2, gridSteps); + h = x(2) - x(1); + + F = sqrt (abs (x)); + phi0 = NA (size (x)); + phi0(1 : end/4) = floorValue; + phi0(3*end/4 : end) = floorValue; + phi0 = fastmarching (phi0, h ./ F); + + % Plot the speed field and initial data. + %{ + figure (); + plot (x, F, "r", x, phi0, "k"); + legend ("F", "\\phi_0"); + title ("Speed Field and Initial Data"); + ax = [-L/2, L/2, -1, 1]; + axis (ax); + %} + + % Create the Laplacian as matrix. We assume homogeneous Neumann boundary + % conditions so that the initial data can be chosen as we like. + Delta = spdiags (repmat ([1, -2, 1], gridSteps, 1), [-1, 0, 1], ... + gridSteps, gridSteps); + Delta(1, 1) += Delta(1, 2); + Delta(end, end) += Delta(end - 1, end); + Delta /= h^2; + + % Perform the calculation. The Laplacian is done implicitly, the + % non-linear term explicitly: + % + % phi+ - phi0 = dt (eps Delta phi+ - F |grad phi0|) + % => (I - dt eps Delta) phi+ = phi0 - F |grad phi0| + + %figure (); + phi = phi0'; + M = eye (gridSteps) - dt * eps * Delta; + for tInd = 2 : timeSteps + + % Calculate derivatives as symmetric differences, and zero on the + % boundary. Since the data is flat there, this is correct. + d = NA (size (phi)); + low = 1 : gridSteps - 2; + mid = 2 : gridSteps - 1; + high = 3 : gridSteps; + d(mid) = (phi(high) - phi(low)) / (2 * h); + d([1, end]) = 0; + gradNorm = abs (d); + + % Do the solve. + phi = M \ (phi - dt * F' .* gradNorm); + phiEx = max (phi0 - t(tInd), floorValue); + assert (phi, phiEx', tol); + + % Show solution as animation in real time. + %{ + if (mod (tInd, 100) == 0) + plot (x, phi, "r", x, phiEx, "k"); + legend ("Approximate", "Exact"); + axis (ax); + title (sprintf ("t = %.2f", t(tInd))); + drawnow (); + %pause (0.1); + endif + %} + endfor +***** demo + n = 100; + x = linspace (-1, 1, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + u0 = NA (size (XX)); + u0(sqrt (XX.^2 + YY.^2) < 0.5) = Inf; + u0(end, :) = 0; + f = 3 + XX; + g0 = NA (size (XX)); + g0(end, :) = x; + + [u, g] = fastmarching (u0, g0, h * f); + + figure (); + subplot (2, 2, 1); + imagesc (f); + colorbar (); + title ("Speed Field"); + subplot (2, 2, 2); + imagesc (u0); + colorbar (); + title ("Initial Distances"); + subplot (2, 2, 3); + imagesc (u); + colorbar (); + title ("Distance u"); + subplot (2, 2, 4); + imagesc (g); + colorbar (); + title ("Extended Function g"); +***** demo + pkgs = pkg ("list"); + file = false; + for i = 1 : length (pkgs) + if (strcmp (pkgs{i}.name, "level-set")) + file = fullfile (pkgs{i}.dir, "maze.png"); + endif + endfor + if (!file) + error ("could not locate example image file"); + endif + img = double (imread (file)) / 255; + + % Red is the start area, white (not black) the accessible domain. + start = (img(:, :, 1) > img(:, :, 2) + img(:, :, 3)); + domain = (img(:, :, 2) + img(:, :, 3) > 1.0) | start; + + u0 = NA (size (domain)); + u0(start) = 0; + u0(~domain) = Inf; + f = ones (size (u0)); + + u = fastmarching (u0, f); + u = u / max (u(isfinite (u))); + + % Format result as image. + walls = isinf (u); + notReached = isna (u); + ur = u; + ug = u; + ub = u; + ur(notReached) = 1; + ug(notReached) = 0; + ub(notReached) = 0; + ur(walls) = 0; + ug(walls) = 0; + ub(walls) = 1; + ur(start) = 1; + ug(start) = 1; + ub(start) = 0; + u = NA (size (u, 1), size (u, 2), 3); + u(:, :, 1) = ur; + u(:, :, 2) = ug; + u(:, :, 3) = ub; + figure (); + imshow (u); + title ("Solved Maze. Blue: Walls, Red: Unreachable, Yellow: Start."); +16 tests, 16 passed, 0 known failure, 0 skipped +[inst/so_explore_descent.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/so_explore_descent.m +***** error + so_explore_descent (1); +***** error + so_explore_descent (1, 2, 3); +***** error + so_explore_descent (struct (), 2); +***** error + so_explore_descent ([2, 3], 2); +***** error <'fload' is not available> + pkg unload -nodeps parallel; + so_explore_descent ("foo", 2); +***** demo + pkg load parallel; + + data = struct (); + data.p = so_init_params (false); + data.p.vol = 10; + data.p.weight = 50; + + data.p.nSteps = 10; + data.figs = struct (); + data.figs.speed = figure (); + data.figs.exploreCosts = figure (); + + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + data.g = struct ("x", x, "h", h); + + data = so_example_problem (data); + phi0 = ls_genbasic (data.g.x, "box", -3, 7); + + printf ("Computing descent...\n"); + f = tmpfile (); + d = data; + d.handler = struct (); + d = so_save_descent (f, struct (), d); + s = so_run_descent (data.p.nSteps, phi0, d); + printf ("Final cost: %.6d\n", s.cost); + + printf ("\nNow replaying...\n"); + init = @() data; + frewind (f); + so_explore_descent (f, init); + fclose (f); +5 tests, 5 passed, 0 known failure, 0 skipped +[inst/ls_hausdorff_dist.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_hausdorff_dist.m +***** error + ls_hausdorff_dist (1) +***** error + ls_hausdorff_dist (1, 2, 3, 4) +***** error + ls_hausdorff_dist (1, 2, [3, 3]) +***** error + ls_hausdorff_dist (1, 2, "foo") +***** test + n = 50; + x = linspace (-5, 5, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + phi1 = ls_genbasic (XX, YY, "sphere", [3, 0], 1); + phi2 = ls_genbasic (XX, YY, "sphere", [-2, 0], 2); + assert (ls_hausdorff_dist (phi1, phi2, h), 6, h); + + % Make sure that phi isn't a signed-distance fcn already. + % ls_genbasic should return the same, but make it explicit. + rSq = XX.^2 + YY.^2; + d = ls_hausdorff_dist (rSq - 4^2, rSq - 2^2, h); + assert (d, 2, h); + dWrong = ls_hausdorff_dist (rSq - 4^2, rSq - 2^2, "sd"); + assert (abs (d - dWrong) > 10 * h); + dRight = ls_hausdorff_dist (sqrt (rSq) - 4, sqrt (rSq) - 2, "sd"); + assert (dRight, d, h); +***** test + n = 200; + x = linspace (-5, 5, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + phiA = ls_genbasic (XX, YY, "sphere", [0, 0], 4); + phiInner = ls_genbasic (XX, YY, "sphere", [0, 0], 2); + phiB = ls_setdiff (phiA, phiInner); + + d1 = ls_hausdorff_dist (phiA, phiB, h); + d2 = ls_hausdorff_dist (phiB, phiA, h); + assert (d1, d2); + assert (d1, 2, 2 * h); + dc = ls_hausdorff_dist (ls_complement (phiA), ... + ls_complement (phiB), h); + assert (dc, 4, 2 * h); + + sdA = ls_signed_distance (phiA, h); + sdB = ls_signed_distance (phiB, h); + sdDiff = norm (sdA(:) - sdB(:), inf); + assert (abs (sdDiff - d1) > 10 * h); +6 tests, 6 passed, 0 known failure, 0 skipped +[inst/ls_signed_distance.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_signed_distance.m +***** error + ls_signed_distance () +***** error + ls_signed_distance (1, 2, 3) +***** test + assert (ls_signed_distance ([]), []); +***** test + n = 10; + x = linspace (-2, 2, n); + h = x(2) - x(1); + phi = abs (x) - 1; + + d = ls_signed_distance (phi, h); + assert (d, phi, sqrt (eps)); +***** test + n = 50; + x = linspace (-2, 2, n); + h = x(2) - x(1); + [XX, YY, ZZ] = ndgrid (x); + RRsq = XX.^2 + YY.^2 + ZZ.^2; + phi = RRsq - 1; + + d = ls_signed_distance (phi, h); + assert (d, sqrt (RRsq) - 1, h); +***** test + phi = [5e-6, 1.7e-154, -1.3e-2]; + for h = [0.02, 0.01, 0.005] + d = ls_signed_distance (phi, h); + assert (all (isfinite (d))); + assert (d(2), 0); + endfor +***** test + phis = ls_get_tests (); + for i = 1 : length (phis) + phi = ls_normalise (phis{i}); + d = ls_signed_distance (phi); + assert (ls_equal (d, phi)); + endfor +***** test + if (exist ("signbit") == 5) + phi = [-0, 0]; + d = ls_signed_distance (phi); + assert (ls_equal (phi, d)); + else + warning ("'signbit' function not available, skipping test."); + endif +***** demo + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + phi0 = atan (ls_union ((XX.^2 + (YY - 5).^2) - 20, ... + (XX.^2 + (YY + 5).^2) - 20)); + %phi0 = XX.^2 / 1.3^2 + YY.^2 - 1; + d = ls_signed_distance (phi0, h); + + figure (); + subplot (1, 2, 1); + contour (XX, YY, phi0); + title ("Initial"); + colorbar (); + axis ("equal"); + + subplot (1, 2, 2); + contour (XX, YY, d); + title ("Signed Distance"); + colorbar (); + axis ("equal"); +8 tests, 8 passed, 0 known failure, 0 skipped +[inst/ls_genbasic.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_genbasic.m +***** shared x, y, XX, YY, XXX, YYY, ZZZ + n = 121; + x = linspace (-5, 7, n); + y = linspace (-7, 5, n); + [XX, YY] = meshgrid (x, y); + [XXX, YYY, ZZZ] = ndgrid (x, y, x); +***** error + ls_genbasic (); +***** error + ls_genbasic (1, 2); +***** error + ls_genbasic ("sphere"); +***** error + ls_genbasic (XX, YY, "unknown"); +***** test + ls_genbasic (x, "sphere", 0, 1); + ls_genbasic (x', "sphere", 0, 1); + ls_genbasic (XX, YY, "sphere", [0, 0], 1); + ls_genbasic (0, 1, "sphere", [0, 0], 1); +***** error + ls_genbasic (XX, YY, "sphere"); +***** error + ls_genbasic (XX, YY, "sphere", 1); +***** error + ls_genbasic (XX, YY, "sphere", 1, 2, 3); +***** error + ls_genbasic (XX, YY, "sphere", [1, 2, 3], 1); +***** error + ls_genbasic (XX, YY, "sphere", [1, 2], [1, 2, 3]); +***** test + assert (ls_genbasic (XX, YY, "sphere", [1, -1], 1), ... + ls_genbasic (XX, YY, "sphere", [1, -1], [1, 1])); +***** test + c = [1; -1; 2]; + r = [1; 2; 0.6]; + tol = 0.4; + phi1 = ls_genbasic (XXX, YYY, ZZZ, "sphere", c, r); + phi2 = ls_genbasic (XXX, YYY, ZZZ, "sphere", c, min (r) - tol); + assert (ls_issubset (phi2, phi1)); + coords = {XXX, YYY, ZZZ}; + for i = 1 : length (c) + assert (ls_disjoint (phi1, ... + coords{i} - (c(i) - r(i)), ... + c(i) + r(i) - coords{i})); + assert (~ls_disjoint (phi1 - tol, coords{i} - (c(i) - r(i)))); + assert (~ls_disjoint (phi1 - tol, c(i) + r(i) - coords{i})); + endfor +***** error + ls_genbasic (XX, YY, "box", 1); +***** error + ls_genbasic (XX, YY, "box", 1, 2, 3); +***** error + ls_genbasic (XX, YY, "box", [1, 2, 3], [1, 2]); +***** error + ls_genbasic (XX, YY, "box", [1; 2], [1, 2, 3]); +***** test + assert (ls_equal (ls_genbasic (x, "box", -1, 2), abs (x - 0.5) - 1.5)); + assert (ls_equal (ls_genbasic (x, "box", 2, -1), abs (x - 0.5) - 1.5)); +***** test + a = [2; -3; 1]; + b = [0; 2; -1]; + tol = 0.2; + phi1 = ls_genbasic (XXX, YYY, ZZZ, "box", a, b); + phi2 = ls_genbasic (XXX, YYY, ZZZ, "box", b, a); + assert (phi1, phi2); + coords = {XXX, YYY, ZZZ}; + for i = 1 : length (coords) + assert (ls_disjoint (phi1, ... + coords{i} - min (a(i), b(i)), ... + max (a(i), b(i)) - coords{i})); + assert (~ls_disjoint (phi1 - tol, coords{i} - min (a(i), b(i)))); + assert (~ls_disjoint (phi1 - tol, max (a(i), b(i)) - coords{i})); + endfor +***** error + ls_genbasic (XX, YY, "half", 1); +***** error + ls_genbasic (XX, YY, "half", 1, 2, 3); +***** error + ls_genbasic (XX, YY, "half", [1, 2, 3], [1, 2]); +***** error + ls_genbasic (XX, YY, "half", [1; 2], [1, 2, 3]); +***** test + p = [0, 2, 1]; + + phi = ls_genbasic (XXX, YYY, ZZZ, "half", p, [0; 0; 1]); + assert (ls_equal (phi, 1 - ZZZ)); + + normal = [1; 2; -0.5]; + phi1 = ls_genbasic (XXX, YYY, ZZZ, "half", p, normal); + phi2 = ls_genbasic (XXX, YYY, ZZZ, "half", p, 2 * normal); + assert (ls_equal (phi1, phi2)); + + phi = ls_genbasic (XX, YY, "half", [0, 0], [1, -1]); + assert (ls_equal (phi, YY - XX)); +***** demo + n = 200; + x = linspace (-7, 7, n); + [XX, YY] = meshgrid (x, x); + + phi1 = ls_genbasic (XX, YY, "box", [-5, -3], [3, 6]); + phi2 = ls_genbasic (XX, YY, "sphere", [-1; 1], 2); + phi3 = ls_genbasic (XX, YY, "sphere", [0; 0], [6, 1]); + phi4 = ls_genbasic (XX, YY, "half", [3, -3], [1, -2]) / 8; + + phi = ls_union (ls_setdiff (phi1, phi2), phi3, phi4); + figure (); + hold ("on"); + imagesc (x, x, phi); + set (gca (), "ydir", "normal"); + ls_sign_colourmap (); + contour (XX, YY, phi, [0, 0], "k"); + hold ("off"); + axis ("equal"); +23 tests, 23 passed, 0 known failure, 0 skipped +[inst/ls_absolute_geom.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_absolute_geom.m +***** error + ls_absolute_geom (1, 2); +***** error + ls_absolute_geom (1, 2, 3, 4); +***** error + x = [-1, 1]; + [XX, YY, ZZ] = ndgrid (x); + ls_absolute_geom (struct (), XX, YY); +***** error + ls_absolute_geom (struct (), [-1, 0, 1], [0, 0, 0]); +***** error + ls_absolute_geom (struct (), zeros (3, 2), zeros (2, 2)); +5 tests, 5 passed, 0 known failure, 0 skipped [inst/ls_disjoint.m] >>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_disjoint.m ***** error @@ -5636,6 +5586,107 @@ assert (~ls_disjoint (phi2, phi3)); assert (~ls_disjoint (phi1, phi2, phi3)); 4 tests, 4 passed, 0 known failure, 0 skipped +[inst/ls_inside.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_inside.m +***** error + ls_inside () +***** error + ls_inside (1, 2) +***** test + assert (ls_inside ([1, 0, -1, 0, 1]), [false, false, true, false, false]); +***** test + if (exist ("signbit") == 5) + assert (ls_inside ([-0, 0]), [true, false]); + else + warning ("'signbit' function not available, skipping test."); + endif +4 tests, 4 passed, 0 known failure, 0 skipped +[inst/ls_enforce_speed.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_enforce_speed.m +***** error + ls_enforce_speed (1, 2) +***** error + ls_enforce_speed (1, 2, 3, 4) +***** error + ls_enforce_speed (1, "inside", [1, 2]); +***** error + ls_enforce_speed (1, "foo", true); +***** error + ls_enforce_speed (1, NA, false); +***** function checkCircleRadius (XX, YY, h, phi, r) + phiCorrect = XX.^2 + YY.^2 - r^2; + sd1 = ls_signed_distance (phi, h); + sd2 = ls_signed_distance (phiCorrect, h); + assert (sd1, sd2, h); +***** endfunction +***** test + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + phi = XX.^2 + YY.^2 - 3^2; + F = ones (size (XX)); + whereContain = (XX.^2 + YY.^2 < 5^2); + F = ls_enforce_speed (F, "contain", whereContain); + whereInside = (XX.^2 + YY.^2 < 8^2); + F = ls_enforce_speed (F, "inside", whereInside); + dists = ls_solve_stationary (phi, F, h); + phi2 = ls_extract_solution (10, dists, phi, F); + assert (ls_check (phi2, "contain", whereContain)); + assert (ls_check (phi2, "inside", whereInside)); + checkCircleRadius (XX, YY, h, phi2, 8); + + phi = XX.^2 + YY.^2 - 8^2; + F = -ones (size (XX)); + whereContain = (XX.^2 + YY.^2 < 5^2); + F = ls_enforce_speed (F, "contain", whereContain); + whereOutside = (XX.^2 + YY.^2 >= 7^2); + F = ls_enforce_speed (F, "outside", whereOutside); + dists = ls_solve_stationary (phi, F, h); + phi2 = ls_extract_solution (10, dists, phi, F); + assert (ls_check (phi2, "contain", whereContain)); + assert (ls_check (phi2, "outside", whereOutside)); + checkCircleRadius (XX, YY, h, phi2, 5); +***** demo + n = 100; + x = linspace (-10, 10, n); + h = x(2) - x(1); + [XX, YY] = meshgrid (x, x); + + phi = XX.^2 + YY.^2 - 8^2; + F = -ones (size (XX)); + F = ls_enforce_speed (F, "outside", XX.^2 + YY.^2 >= 7^2); + F = ls_enforce_speed (F, "contain", XX.^2 + YY.^2 < 3^2); + times = linspace (1, 6, 40); + ls_animate_evolution (phi, F, h, times, 0.05); + + phi = XX.^2 + YY.^2 - 3^2; + F = ones (size (XX)); + F = ls_enforce_speed (F, "inside", XX.^2 + YY.^2 < 8^2); + F = ls_enforce_speed (F, "contain", XX.^2 + YY.^2 < 5^2); + ls_animate_evolution (phi, F, h, times, 0.05); +6 tests, 6 passed, 0 known failure, 0 skipped +[inst/ls_normalise.m] +>>>>> /build/octave-level-set-0.3.1~git.2019.04.13/inst/ls_normalise.m +***** error + ls_normalise () +***** error + ls_normalise (1, 2, 3, 4) +***** test + h = 0.1; + zeroTol = 0.2; + phi = ones (4, 4); + phiEx = phi; + phi(2 : 3, 2 : 3) = [-eps, -0; 0, eps]; + phiEx(2 : 3, 2 : 3) = [-zeroTol*h, -zeroTol*h; zeroTol*h, zeroTol*h]; + phin = ls_normalise (phi, h, zeroTol); + if (exist ("signbit") == 5) + assert (phin, phiEx); + else + warning ("'signbit' function not available, skipping test."); + endif +3 tests, 3 passed, 0 known failure, 0 skipped Checking C++ files ... Summary: 258 tests, 254 passed, 4 known failures, 0 skipped dh_installdocs -O--buildsystem=octave @@ -5653,7 +5704,7 @@ dh_strip -a -O--buildsystem=octave dh_makeshlibs -a -O--buildsystem=octave dh_shlibdeps -a -O--buildsystem=octave -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_geomBoundary.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_internal_init_narrowband.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_internal_fastmarching.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_nbFromGeom.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_geomGamma.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_geomElements.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_internal_mesh.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_upwindGrad.oct were not linked against libpthread.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_geomElements.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_geomGamma.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_geomBoundary.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_nbFromGeom.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_internal_init_narrowband.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_internal_fastmarching.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_internal_mesh.oct debian/octave-level-set/usr/lib/i386-linux-gnu/octave/packages/level-set-0.3.1/i686-pc-linux-gnu-api-v55/__levelset_upwindGrad.oct were not linked against libpthread.so.0 (they use none of the library's symbols) dh_octave_substvar -O--buildsystem=octave dh_installdeb -O--buildsystem=octave dh_gencontrol -O--buildsystem=octave @@ -5670,12 +5721,14 @@ dpkg-source: info: using options from octave-level-set-0.3.1~git.2019.04.13/debian/source/options: --extend-diff-ignore=src/config.log|src/config.status|src/Makefile|src/configure dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/64102/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/64102/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/31619 and its subdirectories -I: Current time: Thu Jul 22 06:26:41 -12 2021 -I: pbuilder-time-stamp: 1626978401 +I: removing directory /srv/workspace/pbuilder/64102 and its subdirectories +I: Current time: Thu Aug 25 14:52:41 +14 2022 +I: pbuilder-time-stamp: 1661388761