Diff of the two buildlogs: -- --- b1/build.log 2021-07-18 08:14:24.596157701 +0000 +++ b2/build.log 2021-07-18 08:15:01.658756773 +0000 @@ -1,8 +1,6 @@ -unshare: unshare failed: Cannot allocate memory -W: pbuilder: unshare CLONE_NEWNET not available -I: pbuilder: network access is available during build! -I: Current time: Sat Jul 17 20:07:48 -12 2021 -I: pbuilder-time-stamp: 1626595668 +I: pbuilder: network access will be disabled during build +I: Current time: Sun Aug 21 04:37:25 +14 2022 +I: pbuilder-time-stamp: 1661006245 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -19,8 +17,8 @@ I: copying [./libccp4_6.5.1-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.bvWoejzt/trustedkeys.kbx': General error -gpgv: Signature made Mon Jan 4 23:36:33 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.1BSJwJv8/trustedkeys.kbx': General error +gpgv: Signature made Wed Jan 6 01:36:33 2021 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -34,137 +32,171 @@ dpkg-source: info: applying 0003-endianness.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/22216/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/35989/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/35989/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/35989/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='05220ffdb8ed459dbdaefcc4aac058bf' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='22216' - PS1='# ' - PS2='> ' + INVOCATION_ID=e4fb3666fdbd4161a2f726af34c535ab + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=35989 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.AtcvWhPGws/pbuilderrc_WqXZ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.AtcvWhPGws/b1 --logfile b1/build.log libccp4_6.5.1-5.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.AtcvWhPGws/pbuilderrc_D3uQ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.AtcvWhPGws/b2 --logfile b2/build.log --extrapackages usrmerge libccp4_6.5.1-5.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin - total 5808 - -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more - -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 15 21:26 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/22216/tmp/hooks/D02_print_environment finished + total 5776 + -rwxr-xr-x 1 root root 1367848 Jun 22 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 2021 more + -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount + -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 21 04:37 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 19 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/35989/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -243,7 +275,7 @@ Get: 35 http://deb.debian.org/debian bullseye/main i386 gfortran i386 4:10.2.1-1 [1436 B] Get: 36 http://deb.debian.org/debian bullseye/main i386 libmmdb2-0 i386 2.0.5-1 [359 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libmmdb2-dev i386 2.0.5-1 [91.9 kB] -Fetched 30.0 MB in 19s (1611 kB/s) +Fetched 30.0 MB in 1s (54.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -408,8 +440,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (3723 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21629 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libccp4-6.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/libccp4-6.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libccp4 dpkg-buildpackage: info: source version 6.5.1-5 dpkg-buildpackage: info: source distribution unstable @@ -440,7 +508,7 @@ ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-static --enable-shared --datadir=/usr/share/ccp4 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a thread-safe mkdir -p... /bin/mkdir -p +checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -462,10 +530,10 @@ checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B @@ -484,8 +552,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E @@ -571,31 +639,54 @@ config.status: executing libtool commands make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_build - make -j10 + make -j18 make[1]: Entering directory '/build/libccp4-6.5.1' m4 -D_gfort=1 fortran/unix.m4 > fortran/unix.f make all-am make[2]: Entering directory '/build/libccp4-6.5.1' -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_array.lo ccp4/ccp4_array.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_data.lo ccp4/cmap_data.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmtzlib.lo ccp4/cmtzlib.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_general.lo ccp4/ccp4_general.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_header.lo ccp4/cmap_header.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/csymlib.lo ccp4/csymlib.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_parser.lo ccp4/ccp4_parser.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_labels.lo ccp4/cmap_labels.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cvecmat.lo ccp4/cvecmat.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_program.lo ccp4/ccp4_program.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_array.lo ccp4/ccp4_array.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_data.lo ccp4/cmap_data.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmtzlib.lo ccp4/cmtzlib.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_general.lo ccp4/ccp4_general.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_header.lo ccp4/cmap_header.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/csymlib.lo ccp4/csymlib.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_parser.lo ccp4/ccp4_parser.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_labels.lo ccp4/cmap_labels.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cvecmat.lo ccp4/cvecmat.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_program.lo ccp4/ccp4_program.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_open.lo ccp4/cmap_open.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_err.lo ccp4/library_err.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_unitcell.lo ccp4/ccp4_unitcell.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_skew.lo ccp4/cmap_skew.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_file.lo ccp4/library_file.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_accessor.lo ccp4/cmap_accessor.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_stats.lo ccp4/cmap_stats.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_utils.lo ccp4/library_utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_array.c -fPIC -DPIC -o ccp4/.libs/ccp4_array.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmtzlib.c -fPIC -DPIC -o ccp4/.libs/cmtzlib.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cvecmat.c -fPIC -DPIC -o ccp4/.libs/cvecmat.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_skew.c -fPIC -DPIC -o ccp4/.libs/cmap_skew.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_general.c -fPIC -DPIC -o ccp4/.libs/ccp4_general.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_file.c -fPIC -DPIC -o ccp4/.libs/library_file.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_err.c -fPIC -DPIC -o ccp4/.libs/library_err.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_accessor.c -fPIC -DPIC -o ccp4/.libs/cmap_accessor.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_labels.c -fPIC -DPIC -o ccp4/.libs/cmap_labels.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_header.c -fPIC -DPIC -o ccp4/.libs/cmap_header.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_data.c -fPIC -DPIC -o ccp4/.libs/cmap_data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_parser.c -fPIC -DPIC -o ccp4/.libs/ccp4_parser.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_unitcell.c -fPIC -DPIC -o ccp4/.libs/ccp4_unitcell.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmtzlib.c -fPIC -DPIC -o ccp4/.libs/cmtzlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/csymlib.c -fPIC -DPIC -o ccp4/.libs/csymlib.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_header.c -fPIC -DPIC -o ccp4/.libs/cmap_header.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_labels.c -fPIC -DPIC -o ccp4/.libs/cmap_labels.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_open.c -fPIC -DPIC -o ccp4/.libs/cmap_open.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_utils.c -fPIC -DPIC -o ccp4/.libs/library_utils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_program.c -fPIC -DPIC -o ccp4/.libs/ccp4_program.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_general.c -fPIC -DPIC -o ccp4/.libs/ccp4_general.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cvecmat.c -fPIC -DPIC -o ccp4/.libs/cvecmat.o +ccp4/library_err.c: In function 'CFile_Perror': +ccp4/library_err.c:247:26: warning: comparison between pointer and zero character constant [-Wpointer-compare] + 247 | if (msg == NULL || msg == '\0') colon = ""; + | ^~ +ccp4/library_err.c:247:22: note: did you mean to dereference the pointer? + 247 | if (msg == NULL || msg == '\0') colon = ""; + | ^ +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_stats.c -fPIC -DPIC -o ccp4/.libs/cmap_stats.o ccp4/ccp4_program.c: In function 'ccp4_vers_no': ccp4/ccp4_program.c:68:12: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 68 | fgets(ccp4version,MAXLEN_PROGVERSION,cfile); @@ -611,6 +702,18 @@ ccp4/cmap_labels.c:64:12: note: length computed here 64 | slen = strlen(mfile->labels.labels[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_close.lo ccp4/cmap_close.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_symop.lo ccp4/cmap_symop.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/pack_c.lo ccp4/pack_c.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_diskio_f.lo `test -f 'fortran/ccp4_diskio_f.c' || echo './'`fortran/ccp4_diskio_f.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_parser_f.lo `test -f 'fortran/ccp4_parser_f.c' || echo './'`fortran/ccp4_parser_f.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmaplib_f.lo `test -f 'fortran/cmaplib_f.c' || echo './'`fortran/cmaplib_f.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-csymlib_f.lo `test -f 'fortran/csymlib_f.c' || echo './'`fortran/csymlib_f.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_close.c -fPIC -DPIC -o ccp4/.libs/cmap_close.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_symop.c -fPIC -DPIC -o ccp4/.libs/cmap_symop.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_general_f.lo `test -f 'fortran/ccp4_general_f.c' || echo './'`fortran/ccp4_general_f.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/pack_c.c -fPIC -DPIC -o ccp4/.libs/pack_c.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_diskio_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_diskio_f.o In file included from /usr/include/string.h:495, from ccp4/ccp4_parser.c:90: In function 'strncpy', @@ -633,6 +736,12 @@ ccp4/ccp4_parser.c:324:20: note: length computed here 324 | lnulldelim = strlen(defnulldelim) + 1; | ^~~~~~~~~~~~~~~~~~~~ +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_parser_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_parser_f.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmaplib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmaplib_f.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_unitcell_f.lo `test -f 'fortran/ccp4_unitcell_f.c' || echo './'`fortran/ccp4_unitcell_f.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmtzlib_f.lo `test -f 'fortran/cmtzlib_f.c' || echo './'`fortran/cmtzlib_f.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/csymlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-csymlib_f.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-library_f.lo `test -f 'fortran/library_f.c' || echo './'`fortran/library_f.c In file included from /usr/include/string.h:495, from ccp4/ccp4_parser.c:90: In function 'strncpy', @@ -644,8 +753,10 @@ ccp4/ccp4_parser.c:381:18: note: length computed here 381 | lcomment = strlen(def_comment_chars) + 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_open.lo ccp4/cmap_open.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_err.lo ccp4/library_err.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_general_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_general_f.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_unitcell_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmtzlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmtzlib_f.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/library_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-library_f.o In file included from /usr/include/string.h:495, from ccp4/ccp4_parser.c:90: In function 'strncpy', @@ -657,62 +768,9 @@ ccp4/ccp4_parser.c:1075:10: note: length computed here 1075 | len1 = strlen(keyin1); | ^~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_unitcell.lo ccp4/ccp4_unitcell.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_open.c -fPIC -DPIC -o ccp4/.libs/cmap_open.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_err.c -fPIC -DPIC -o ccp4/.libs/library_err.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_unitcell.c -fPIC -DPIC -o ccp4/.libs/ccp4_unitcell.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_skew.lo ccp4/cmap_skew.c -ccp4/library_err.c: In function 'CFile_Perror': -ccp4/library_err.c:247:26: warning: comparison between pointer and zero character constant [-Wpointer-compare] - 247 | if (msg == NULL || msg == '\0') colon = ""; - | ^~ -ccp4/library_err.c:247:22: note: did you mean to dereference the pointer? - 247 | if (msg == NULL || msg == '\0') colon = ""; - | ^ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_skew.c -fPIC -DPIC -o ccp4/.libs/cmap_skew.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_file.lo ccp4/library_file.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_accessor.lo ccp4/cmap_accessor.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_file.c -fPIC -DPIC -o ccp4/.libs/library_file.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_stats.lo ccp4/cmap_stats.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_utils.lo ccp4/library_utils.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_accessor.c -fPIC -DPIC -o ccp4/.libs/cmap_accessor.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_close.lo ccp4/cmap_close.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_utils.c -fPIC -DPIC -o ccp4/.libs/library_utils.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_stats.c -fPIC -DPIC -o ccp4/.libs/cmap_stats.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_symop.lo ccp4/cmap_symop.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_close.c -fPIC -DPIC -o ccp4/.libs/cmap_close.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_symop.c -fPIC -DPIC -o ccp4/.libs/cmap_symop.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/pack_c.lo ccp4/pack_c.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_diskio_f.lo `test -f 'fortran/ccp4_diskio_f.c' || echo './'`fortran/ccp4_diskio_f.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/pack_c.c -fPIC -DPIC -o ccp4/.libs/pack_c.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_parser_f.lo `test -f 'fortran/ccp4_parser_f.c' || echo './'`fortran/ccp4_parser_f.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmaplib_f.lo `test -f 'fortran/cmaplib_f.c' || echo './'`fortran/cmaplib_f.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_diskio_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_diskio_f.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-csymlib_f.lo `test -f 'fortran/csymlib_f.c' || echo './'`fortran/csymlib_f.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_parser_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_parser_f.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmaplib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmaplib_f.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/csymlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-csymlib_f.o -In file included from /usr/include/string.h:495, - from fortran/ccp4_diskio_f.c:59: -In function 'strncpy', - inlined from 'qqinq_' at fortran/ccp4_diskio_f.c:718:5: -/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ./ccp4/ccp4_utils.h:29, - from fortran/ccp4_diskio_f.c:60: -fortran/ccp4_diskio_f.c: In function 'qqinq_': -fortran/ccp4_diskio_f.c:719:25: note: length computed here - 719 | MIN(strlen(_ioChannels[*istrm]->iobj->name), -./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' - 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) - | ^ -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_general_f.lo `test -f 'fortran/ccp4_general_f.c' || echo './'`fortran/ccp4_general_f.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_unitcell_f.lo `test -f 'fortran/ccp4_unitcell_f.c' || echo './'`fortran/ccp4_unitcell_f.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_general_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_general_f.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_unitcell_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmtzlib_f.lo `test -f 'fortran/cmtzlib_f.c' || echo './'`fortran/cmtzlib_f.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-library_f.lo `test -f 'fortran/library_f.c' || echo './'`fortran/library_f.c +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/ccplib.lo fortran/ccplib.f +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/fftlib.lo fortran/fftlib.f +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/modlib.lo fortran/modlib.f In file included from fortran/ccp4_general_f.c:34: fortran/ccp4_general_f.c: In function 'ccpfyp_': fortran/ccp4_general_f.c:88:23: warning: implicit declaration of function 'outbuf_' [-Wimplicit-function-declaration] @@ -732,6 +790,7 @@ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/parser.lo fortran/parser.f fortran/ccp4_general_f.c: In function 'ccperr_': fortran/ccp4_general_f.c:218:37: warning: implicit declaration of function 'ccp4_fflush_stdout_' [-Wimplicit-function-declaration] 218 | FORTRAN_CALL (CCP4_FFLUSH_STDOUT, ccp4_fflush_stdout, (), (), ()); @@ -758,45 +817,9 @@ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ -In file included from /usr/include/string.h:495, - from fortran/cmaplib_f.c:46: -In function 'strncpy', - inlined from 'mrdhds_' at fortran/cmaplib_f.c:713:3: -/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ./ccp4/ccp4_utils.h:29, - from ./ccp4/cmaplib.h:58, - from ./ccp4/cmaplib_f.h:22, - from fortran/cmaplib_f.c:49: -fortran/cmaplib_f.c: In function 'mrdhds_': -fortran/cmaplib_f.c:713:32: note: length computed here - 713 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); -./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' - 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) - | ^ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/library_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-library_f.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmtzlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmtzlib_f.o -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/ccplib.lo fortran/ccplib.f -In file included from /usr/include/string.h:495, - from fortran/cmaplib_f.c:46: -In function 'strncpy', - inlined from 'ccp4_map_read_open_header_' at fortran/cmaplib_f.c:917:3: -/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ./ccp4/ccp4_utils.h:29, - from ./ccp4/cmaplib.h:58, - from ./ccp4/cmaplib_f.h:22, - from fortran/cmaplib_f.c:49: -fortran/cmaplib_f.c: In function 'ccp4_map_read_open_header_': -fortran/cmaplib_f.c:917:32: note: length computed here - 917 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); -./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' - 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) - | ^ In file included from fortran/cmtzlib_f.c:70: fortran/cmtzlib_f.c: In function 'mtzini_': +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/ccplib.f -fPIC -o fortran/.libs/ccplib.o fortran/cmtzlib_f.c:152:33: warning: implicit declaration of function 'ccp4h_init_lib_' [-Wimplicit-function-declaration] 152 | FORTRAN_CALL (CCP4H_INIT_LIB, ccp4h_init_lib, (&ihtml,&isumm), (&ihtml,&isumm), (&ihtml,&isumm)); | ^~~~~~~~~~~~~~ @@ -813,6 +836,7 @@ ./ccp4/cmtzlib.h:668:38: note: expected 'char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} 668 | int ccp4_lrhist(const MTZ *mtz, char history[][MTZRECORDLENGTH], int nlines); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/fftlib.f -fPIC -o fortran/.libs/fftlib.o fortran/cmtzlib_f.c: In function 'lkyin_': fortran/cmtzlib_f.c:632:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 632 | if (MtzParseLabin(temp_name,label,*nlprgi,user_label_in[*mindx-1]) == -1) @@ -901,6 +925,7 @@ ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'char *' 875 | int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/modlib.f -fPIC -o fortran/.libs/modlib.o fortran/cmtzlib_f.c: In function 'lwassn_': fortran/cmtzlib_f.c:2432:46: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2432 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); @@ -939,13 +964,27 @@ ./ccp4/cmtzlib.h:936:25: note: expected 'const char (*)[3]' but argument is of type 'char *' 936 | const char types[][3], const int iappnd); | ~~~~~~~~~~~^~~~~~~~~~ -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/fftlib.lo fortran/fftlib.f -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/ccplib.f -fPIC -o fortran/.libs/ccplib.o -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/modlib.lo fortran/modlib.f -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/fftlib.f -fPIC -o fortran/.libs/fftlib.o -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/parser.lo fortran/parser.f -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/rwbrook.lo fortran/rwbrook.f -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/modlib.f -fPIC -o fortran/.libs/modlib.o +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/parser.f -fPIC -o fortran/.libs/parser.o +fortran/modlib.f:256:72: + + 256 | DO 100 I = 1, P + | 1 +Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) +fortran/modlib.f:258:72: + + 258 | DO 100 K = 1, R + | 1 +Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) +fortran/modlib.f:259:72: + + 259 | DO 100 J = 1, Q + | 1 +Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) +fortran/modlib.f:263:72: + + 263 | 100 D(I,L) = D(I,L) + A(I,J) * B(J,K) * C(K,L) + | 1 +Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) fortran/ccplib.f:1039:72: 1039 | 10 IARR1(J)=IARR2(J) @@ -956,7 +995,11 @@ 1064 | 10 ARR1(J)=ARR2(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/parser.f -fPIC -o fortran/.libs/parser.o +fortran/modlib.f:749:72: + + 749 | IF (M-2) 30,10,20 + | 1 +Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/fftlib.f:1252:72: 1252 | IF (K-I) 90,130,100 @@ -977,32 +1020,23 @@ 1879 | 10 ARR1(J)=0.0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) -fortran/modlib.f:256:72: - - 256 | DO 100 I = 1, P - | 1 -Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) -fortran/modlib.f:258:72: - - 258 | DO 100 K = 1, R - | 1 -Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) -fortran/modlib.f:259:72: - - 259 | DO 100 J = 1, Q - | 1 -Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) -fortran/modlib.f:263:72: - - 263 | 100 D(I,L) = D(I,L) + A(I,J) * B(J,K) * C(K,L) - | 1 -Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/rwbrook.f -fPIC -o fortran/.libs/rwbrook.o -fortran/modlib.f:749:72: - - 749 | IF (M-2) 30,10,20 - | 1 -Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/rwbrook.lo fortran/rwbrook.f +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/libhtml.lo fortran/libhtml.f +In file included from /usr/include/string.h:495, + from fortran/ccp4_diskio_f.c:59: +In function 'strncpy', + inlined from 'qqinq_' at fortran/ccp4_diskio_f.c:718:5: +/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ./ccp4/ccp4_utils.h:29, + from fortran/ccp4_diskio_f.c:60: +fortran/ccp4_diskio_f.c: In function 'qqinq_': +fortran/ccp4_diskio_f.c:719:25: note: length computed here + 719 | MIN(strlen(_ioChannels[*istrm]->iobj->name), +./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' + 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) + | ^ fortran/modlib.f:1386:18: 1383 | DO 20 J = 2,M @@ -1058,7 +1092,11 @@ 1443 | A(I,I) = H | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/libhtml.lo fortran/libhtml.f +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/rwbrook.f -fPIC -o fortran/.libs/rwbrook.o +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/keyparse.lo fortran/keyparse.f +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/libhtml.f -fPIC -o fortran/.libs/libhtml.o +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/dna_output.lo fortran/dna_output.f +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/keyparse.f -fPIC -o fortran/.libs/keyparse.o fortran/rwbrook.f:1633:72: 1633 | DO 10 J=1,4 @@ -1069,40 +1107,8 @@ 1651 | DO 20 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) -In file included from /usr/include/string.h:495, - from fortran/cmaplib_f.c:46: -In function 'strncpy', - inlined from 'mwfnam_' at fortran/cmaplib_f.c:2110:3: -/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ./ccp4/ccp4_utils.h:29, - from ./ccp4/cmaplib.h:58, - from ./ccp4/cmaplib_f.h:22, - from fortran/cmaplib_f.c:49: -fortran/cmaplib_f.c: In function 'mwfnam_': -fortran/cmaplib_f.c:2111:8: note: length computed here - 2111 | MIN(strlen(ioArray[last_Write]->logname), -./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' - 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) - | ^ -In file included from /usr/include/string.h:495, - from fortran/cmaplib_f.c:46: -In function 'strncpy', - inlined from 'mrfnam_' at fortran/cmaplib_f.c:2138:3: -/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ./ccp4/ccp4_utils.h:29, - from ./ccp4/cmaplib.h:58, - from ./ccp4/cmaplib_f.h:22, - from fortran/cmaplib_f.c:49: -fortran/cmaplib_f.c: In function 'mrfnam_': -fortran/cmaplib_f.c:2139:8: note: length computed here - 2139 | MIN(strlen(ioArray[last_Read]->logname), -./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' - 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) - | ^ +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/pack_f.lo fortran/pack_f.f +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/dna_output.f -fPIC -o fortran/.libs/dna_output.o fortran/rwbrook.f:2314:72: 2314 | DO 10 J=1,3 @@ -1128,19 +1134,48 @@ 2817 | DO 40 J = 1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/keyparse.lo fortran/keyparse.f -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/dna_output.lo fortran/dna_output.f -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/libhtml.f -fPIC -o fortran/.libs/libhtml.o -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/keyparse.f -fPIC -o fortran/.libs/keyparse.o -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/dna_output.f -fPIC -o fortran/.libs/dna_output.o -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/pack_f.lo fortran/pack_f.f -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/pxxml.lo fortran/pxxml.f libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/pack_f.f -fPIC -o fortran/.libs/pack_f.o +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/pxxml.lo fortran/pxxml.f +In file included from /usr/include/string.h:495, + from fortran/cmaplib_f.c:46: +In function 'strncpy', + inlined from 'mrdhds_' at fortran/cmaplib_f.c:713:3: +/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ./ccp4/ccp4_utils.h:29, + from ./ccp4/cmaplib.h:58, + from ./ccp4/cmaplib_f.h:22, + from fortran/cmaplib_f.c:49: +fortran/cmaplib_f.c: In function 'mrdhds_': +fortran/cmaplib_f.c:713:32: note: length computed here + 713 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); +./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' + 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) + | ^ libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/pxxml.f -fPIC -o fortran/.libs/pxxml.o -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/lgglib.lo fortran/lgglib.f -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/plot84lib.lo fortran/plot84lib.f +In file included from /usr/include/string.h:495, + from fortran/cmaplib_f.c:46: +In function 'strncpy', + inlined from 'ccp4_map_read_open_header_' at fortran/cmaplib_f.c:917:3: +/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ./ccp4/ccp4_utils.h:29, + from ./ccp4/cmaplib.h:58, + from ./ccp4/cmaplib_f.h:22, + from fortran/cmaplib_f.c:49: +fortran/cmaplib_f.c: In function 'ccp4_map_read_open_header_': +fortran/cmaplib_f.c:917:32: note: length computed here + 917 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); +./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' + 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) + | ^ +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/lgglib.lo fortran/lgglib.f +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/plot84lib.lo fortran/plot84lib.f +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/plotsubs.lo fortran/plotsubs.f libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/lgglib.f -fPIC -o fortran/.libs/lgglib.o -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/plotsubs.lo fortran/plotsubs.f +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/plot84lib.f -fPIC -o fortran/.libs/plot84lib.o fortran/lgglib.f:43:72: 43 | 10 A(I)=CELL(I)*V(I) @@ -1201,7 +1236,7 @@ 124 | 10 OUT(II,IJ)=A1(II,IJ)-A2(II,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/plot84lib.f -fPIC -o fortran/.libs/plot84lib.o +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/plotsubs.f -fPIC -o fortran/.libs/plotsubs.o fortran/lgglib.f:280:72: 280 | DO 20 IC=1,3 @@ -1217,6 +1252,22 @@ 668 | 10 DOSQ = DOSQ + V(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) +fortran/plotsubs.f:312:72: + + 312 | 1 CALL PLTDWU(X(I),Y(I)) + | 1 +Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) +fortran/plotsubs.f:352:72: + + 352 | IF(J) 26,26,27 + | 1 +Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) +fortran/plotsubs.f:377:72: + + 377 | IF(J) 30,28,20 + | 1 +Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/sorting_main.lo fortran/sorting_main.f fortran/lgglib.f:1766:72: 1766 | DO 10 I2=1,IN @@ -1227,48 +1278,11 @@ 1767 | 10 A(I1,I2)=A1(I1,I2)*C | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) -ccp4/cmtzlib.c: In function 'MtzPut': -ccp4/cmtzlib.c:2721:27: warning: '%74s' directive writing between 74 and 80 bytes into a region of size 76 [-Wformat-overflow=] - 2721 | sprintf(hdrrec,"SYMM %74s",symline); - | ^~~~ ~~~~~~~ -In file included from /usr/include/stdio.h:867, - from ccp4/cmtzlib.c:23: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 80 and 86 bytes into a destination of size 81 - 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 37 | __bos (__s), __fmt, __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/lgglib.f:1912:72: 1912 | 10 ME(J)=J | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) -ccp4/cmtzlib.c:2815:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] - 2815 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); - | ^~~ -ccp4/cmtzlib.c:2815:20: note: directive argument in the range [0, 2147483647] - 2815 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:867, - from ccp4/cmtzlib.c:23: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 - 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 37 | __bos (__s), __fmt, __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -ccp4/cmtzlib.c:2817:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] - 2817 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); - | ^~~ -ccp4/cmtzlib.c:2817:20: note: directive argument in the range [0, 2147483647] - 2817 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:867, - from ccp4/cmtzlib.c:23: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 - 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 37 | __bos (__s), __fmt, __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/lgglib.f:1934:72: 1934 | 40 A(I,J) = A(I,J)*Y @@ -1404,13 +1418,13 @@ 2332 | IF(IFIELD - 3) 9987,1002,9987 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/sorting_main.lo fortran/sorting_main.f +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/sorting_main.f -fPIC -o fortran/.libs/sorting_main.o +/bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/unix.lo fortran/unix.f fortran/lgglib.f:3222:72: 3222 | 10 POIMULT=V1(I)*V2(I)+POIMULT | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/plotsubs.f -fPIC -o fortran/.libs/plotsubs.o fortran/lgglib.f:4072:72: 4072 | DO 5 J = 1, NATM @@ -1421,28 +1435,12 @@ 4073 | 5 CALL ARRGIVE(3,EMT(1,I),VT((J-1)*3+1,I+3)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) -/bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/unix.lo fortran/unix.f -fortran/plotsubs.f:312:72: - - 312 | 1 CALL PLTDWU(X(I),Y(I)) - | 1 -Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) -fortran/plotsubs.f:352:72: - - 352 | IF(J) 26,26,27 - | 1 -Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) -fortran/plotsubs.f:377:72: - - 377 | IF(J) 30,28,20 - | 1 -Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) +libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/unix.f -fPIC -o fortran/.libs/unix.o fortran/lgglib.f:5842:72: 5842 | 10 C=C+V(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/sorting_main.f -fPIC -o fortran/.libs/sorting_main.o fortran/lgglib.f:1315:72: 1315 | 1 , (X(I,NATM),I=1,3) @@ -1480,7 +1478,40 @@ 2424 | rt(j,4) = gt(4,j) | 1 Warning: Array reference at (1) out of bounds (4 > 3) in loop beginning at (2) -libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/unix.f -fPIC -o fortran/.libs/unix.o +In file included from /usr/include/string.h:495, + from fortran/cmaplib_f.c:46: +In function 'strncpy', + inlined from 'mwfnam_' at fortran/cmaplib_f.c:2110:3: +/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ./ccp4/ccp4_utils.h:29, + from ./ccp4/cmaplib.h:58, + from ./ccp4/cmaplib_f.h:22, + from fortran/cmaplib_f.c:49: +fortran/cmaplib_f.c: In function 'mwfnam_': +fortran/cmaplib_f.c:2111:8: note: length computed here + 2111 | MIN(strlen(ioArray[last_Write]->logname), +./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' + 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) + | ^ +In file included from /usr/include/string.h:495, + from fortran/cmaplib_f.c:46: +In function 'strncpy', + inlined from 'mrfnam_' at fortran/cmaplib_f.c:2138:3: +/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ./ccp4/ccp4_utils.h:29, + from ./ccp4/cmaplib.h:58, + from ./ccp4/cmaplib_f.h:22, + from fortran/cmaplib_f.c:49: +fortran/cmaplib_f.c: In function 'mrfnam_': +fortran/cmaplib_f.c:2139:8: note: length computed here + 2139 | MIN(strlen(ioArray[last_Read]->logname), +./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' + 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) + | ^ fortran/plot84lib.f:6390:25: 6390 | CALL QWRITE(IUNITR,IREC,NRECL) @@ -1507,12 +1538,49 @@ 10427 | CALL TRIPLOT(ICLEAR,1) | 1 Warning: Rank mismatch in argument 'line' at (1) (rank-1 and scalar) -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o ccp4/libccp4c.la -rpath /usr/lib/i386-linux-gnu ccp4/ccp4_array.lo ccp4/cmap_data.lo ccp4/cmtzlib.lo ccp4/ccp4_general.lo ccp4/cmap_header.lo ccp4/csymlib.lo ccp4/ccp4_parser.lo ccp4/cmap_labels.lo ccp4/cvecmat.lo ccp4/ccp4_program.lo ccp4/cmap_open.lo ccp4/library_err.lo ccp4/ccp4_unitcell.lo ccp4/cmap_skew.lo ccp4/library_file.lo ccp4/cmap_accessor.lo ccp4/cmap_stats.lo ccp4/library_utils.lo ccp4/cmap_close.lo ccp4/cmap_symop.lo ccp4/pack_c.lo -lm +ccp4/cmtzlib.c: In function 'MtzPut': +ccp4/cmtzlib.c:2721:27: warning: '%74s' directive writing between 74 and 80 bytes into a region of size 76 [-Wformat-overflow=] + 2721 | sprintf(hdrrec,"SYMM %74s",symline); + | ^~~~ ~~~~~~~ +In file included from /usr/include/stdio.h:867, + from ccp4/cmtzlib.c:23: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 80 and 86 bytes into a destination of size 81 + 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 37 | __bos (__s), __fmt, __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +ccp4/cmtzlib.c:2815:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] + 2815 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); + | ^~~ +ccp4/cmtzlib.c:2815:20: note: directive argument in the range [0, 2147483647] + 2815 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:867, + from ccp4/cmtzlib.c:23: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 + 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 37 | __bos (__s), __fmt, __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +ccp4/cmtzlib.c:2817:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] + 2817 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); + | ^~~ +ccp4/cmtzlib.c:2817:20: note: directive argument in the range [0, 2147483647] + 2817 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:867, + from ccp4/cmtzlib.c:23: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 + 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 37 | __bos (__s), __fmt, __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o ccp4/libccp4c.la -rpath /usr/lib/i386-linux-gnu ccp4/ccp4_array.lo ccp4/cmap_data.lo ccp4/cmtzlib.lo ccp4/ccp4_general.lo ccp4/cmap_header.lo ccp4/csymlib.lo ccp4/ccp4_parser.lo ccp4/cmap_labels.lo ccp4/cvecmat.lo ccp4/ccp4_program.lo ccp4/cmap_open.lo ccp4/library_err.lo ccp4/ccp4_unitcell.lo ccp4/cmap_skew.lo ccp4/library_file.lo ccp4/cmap_accessor.lo ccp4/cmap_stats.lo ccp4/library_utils.lo ccp4/cmap_close.lo ccp4/cmap_symop.lo ccp4/pack_c.lo -lm libtool: link: gcc -shared -fPIC -DPIC ccp4/.libs/ccp4_array.o ccp4/.libs/cmap_data.o ccp4/.libs/cmtzlib.o ccp4/.libs/ccp4_general.o ccp4/.libs/cmap_header.o ccp4/.libs/csymlib.o ccp4/.libs/ccp4_parser.o ccp4/.libs/cmap_labels.o ccp4/.libs/cvecmat.o ccp4/.libs/ccp4_program.o ccp4/.libs/cmap_open.o ccp4/.libs/library_err.o ccp4/.libs/ccp4_unitcell.o ccp4/.libs/cmap_skew.o ccp4/.libs/library_file.o ccp4/.libs/cmap_accessor.o ccp4/.libs/cmap_stats.o ccp4/.libs/library_utils.o ccp4/.libs/cmap_close.o ccp4/.libs/cmap_symop.o ccp4/.libs/pack_c.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4c.so.0 -o ccp4/.libs/libccp4c.so.0.0.0 libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so.0" && ln -s "libccp4c.so.0.0.0" "libccp4c.so.0") libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so" && ln -s "libccp4c.so.0.0.0" "libccp4c.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libccp4c.la" && ln -s "../libccp4c.la" "libccp4c.la" ) -/bin/bash ./libtool --tag=F77 --mode=link gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/i386-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm +/bin/sh ./libtool --tag=F77 --mode=link gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/i386-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm libtool: link: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -Wl,-rpath -Wl,/build/libccp4-6.5.1/ccp4/.libs ccp4/.libs/libccp4c.so -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so.0" && ln -s "libccp4f.so.0.0.0" "libccp4f.so.0") libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so" && ln -s "libccp4f.so.0.0.0" "libccp4f.so") @@ -1520,7 +1588,7 @@ make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_test - make -j10 check VERBOSE=1 + make -j18 check VERBOSE=1 make[1]: Entering directory '/build/libccp4-6.5.1' make check-am make[2]: Entering directory '/build/libccp4-6.5.1' @@ -1534,27 +1602,27 @@ make install-am make[2]: Entering directory '/build/libccp4-6.5.1' make[3]: Entering directory '/build/libccp4-6.5.1' - /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c ccp4/libccp4c.la fortran/libccp4f.la '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu' + /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c ccp4/libccp4c.la fortran/libccp4f.la '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.so.0.0.0 /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4c.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so.0 || { rm -f libccp4c.so.0 && ln -s libccp4c.so.0.0.0 libccp4c.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so || { rm -f libccp4c.so && ln -s libccp4c.so.0.0.0 libccp4c.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4c.la libtool: warning: relinking 'fortran/libccp4f.la' -libtool: install: (cd /build/libccp4-6.5.1; /bin/bash "/build/libccp4-6.5.1/libtool" --tag F77 --mode=relink gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/i386-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm -inst-prefix-dir /build/libccp4-6.5.1/debian/tmp) +libtool: install: (cd /build/libccp4-6.5.1; /bin/sh "/build/libccp4-6.5.1/libtool" --tag F77 --mode=relink gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/i386-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm -inst-prefix-dir /build/libccp4-6.5.1/debian/tmp) libtool: relink: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -L/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lccp4c -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.so.0.0.0T /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4f.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so.0 || { rm -f libccp4f.so.0 && ln -s libccp4f.so.0.0.0 libccp4f.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so || { rm -f libccp4f.so && ln -s libccp4f.so.0.0.0 libccp4f.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4f.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' - /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' + /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_file_err.h ccp4/ccp4_program.h ccp4/ccp4_unitcell.h ccp4/cmap_errno.h ccp4/cmap_stats.h ccp4/csymlib.h ccp4/library_file.h ccp4/w32mvs.h ccp4/ccp4_fortran.h ccp4/ccp4_spg.h ccp4/ccp4_utils.h ccp4/cmap_header.h ccp4/cmaplib.h ccp4/cvecmat.h ccp4/mtzdata.h ccp4/ccp4_array.h ccp4/ccp4_general.h ccp4/ccp4_sysdep.h ccp4/ccp4_vars.h ccp4/cmap_labels.h ccp4/cmaplib_f.h ccp4/overview.h ccp4/ccp4_errno.h ccp4/ccp4_parser.h ccp4/ccp4_types.h ccp4/cmap_data.h ccp4/cmap_skew.h ccp4/cmtzlib.h ccp4/pack_c.h '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' - /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' + /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 ccp4-config.cmake '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' - /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' + /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 data/atomsf_neutron.lib data/atomsf_electron.lib data/atomsf.lib data/syminfo.lib data/symop.lib data/font84.ascii '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' - /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' + /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libccp4c.pc libccp4f.pc '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libccp4-6.5.1' make[2]: Leaving directory '/build/libccp4-6.5.1' @@ -1581,23 +1649,26 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libccp4c0' in '../libccp4c0_6.5.1-5_i386.deb'. dpkg-deb: building package 'libccp4-data' in '../libccp4-data_6.5.1-5_all.deb'. dpkg-deb: building package 'libccp4-dev' in '../libccp4-dev_6.5.1-5_i386.deb'. +dpkg-deb: building package 'libccp4c0' in '../libccp4c0_6.5.1-5_i386.deb'. +dpkg-deb: building package 'libccp4c0-dbgsym' in '../libccp4c0-dbgsym_6.5.1-5_i386.deb'. dpkg-deb: building package 'libccp4f0' in '../libccp4f0_6.5.1-5_i386.deb'. dpkg-deb: building package 'libccp4f0-dbgsym' in '../libccp4f0-dbgsym_6.5.1-5_i386.deb'. -dpkg-deb: building package 'libccp4c0-dbgsym' in '../libccp4c0-dbgsym_6.5.1-5_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libccp4_6.5.1-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) +I: copying local configuration +I: user script /srv/workspace/pbuilder/35989/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/35989/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/22216 and its subdirectories -I: Current time: Sat Jul 17 20:14:24 -12 2021 -I: pbuilder-time-stamp: 1626596064 +I: removing directory /srv/workspace/pbuilder/35989 and its subdirectories +I: Current time: Sun Aug 21 04:38:00 +14 2022 +I: pbuilder-time-stamp: 1661006280