Diff of the two buildlogs: -- --- b1/build.log 2021-07-24 17:35:25.772417305 +0000 +++ b2/build.log 2021-07-24 18:03:06.985559662 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jul 24 05:20:47 -12 2021 -I: pbuilder-time-stamp: 1627147247 +I: Current time: Sun Jul 25 07:36:32 +14 2021 +I: pbuilder-time-stamp: 1627148192 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./votca-csg_1.6.4-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.ezwYKad9/trustedkeys.kbx': General error -gpgv: Signature made Fri Jan 29 04:58:46 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Ocund7QN/trustedkeys.kbx': General error +gpgv: Signature made Sat Jan 30 06:58:46 2021 +14 gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" gpgv: Can't check signature: No public key @@ -29,135 +29,169 @@ dpkg-source: info: unpacking votca-csg_1.6.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/19292/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/28070/tmp/hooks/D01_modify_environment starting +debug: Running on virt32c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/28070/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/28070/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='b122723dd1c94450befa2d02613be650' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='19292' - PS1='# ' - PS2='> ' + INVOCATION_ID=59f8b84b09d34ce4b59a6668b723feca + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=28070 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/pbuilderrc_elTM --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/b1 --logfile b1/build.log votca-csg_1.6.4-1.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/pbuilderrc_iLAH --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/b2 --logfile b2/build.log --extrapackages usrmerge votca-csg_1.6.4-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1c 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-2 (2021-07-20) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 23 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/19292/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 25 07:37 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 22 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/28070/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -319,7 +353,7 @@ Get: 95 http://deb.debian.org/debian bullseye/main armhf libvotca-tools-dev armhf 1.6.4-1 [40.0 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf txt2tags all 3.4-2 [121 kB] -Fetched 60.5 MB in 13s (4735 kB/s) +Fetched 60.5 MB in 5s (11.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -727,8 +761,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (570 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42983 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/votca-csg-1.6.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../votca-csg_1.6.4-1_source.changes +hostname: Name or service not known +I: Running cd /build/votca-csg-1.6.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../votca-csg_1.6.4-1_source.changes dpkg-buildpackage: info: source package votca-csg dpkg-buildpackage: info: source version 1.6.4-1 dpkg-buildpackage: info: source distribution unstable @@ -768,7 +839,7 @@ -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found TXT2TAGS: /usr/bin/txt2tags --- Found UnixCommands: /bin/bash +-- Found UnixCommands: /usr/bin/bash -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options filesystem system -- Found Eigen3: /usr/share/eigen3/cmake -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options @@ -855,7 +926,7 @@ -- Build files have been written to: /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/votca-csg-1.6.4' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/votca-csg-1.6.4 -B/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -863,113 +934,115 @@ make[2]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/man /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/depend +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/man /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake --color= +make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake --color= -make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake --color= +make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/depend +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/depend.internal". Scanning dependencies of target votca-csg_manpage +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/depend.internal". make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/build -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/depend.internal". -Scanning dependencies of target gitversion-csg -make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/build -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/depend.internal". -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -DGIT_EXECUTABLE="" -P /build/votca-csg-1.6.4/CMakeModules/gitversion.cmake Scanning dependencies of target help2t2t_build -[ 1%] Building votca-csg manpage -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man && /usr/bin/txt2tags -q -t man -i /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/votca-csg.t2t -o /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/votca-csg.man +Scanning dependencies of target gitversion-csg make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 2%] Generating help2t2t, ALL -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="help2t2t.out" -DOUTPUT="help2t2t" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake -make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 2%] Built target gitversion-csg -make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/depend -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake --color= +make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/build Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/depend.internal". -Scanning dependencies of target csg_call_build make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +Scanning dependencies of target csg_call_build +make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/build +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -DGIT_EXECUTABLE="" -P /build/votca-csg-1.6.4/CMakeModules/gitversion.cmake make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 2%] Built target help2t2t_build +[ 2%] Generating help2t2t, ALL +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="help2t2t.out" -DOUTPUT="help2t2t" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake +[ 1%] Building votca-csg manpage +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man && /usr/bin/txt2tags -q -t man -i /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/votca-csg.t2t -o /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/votca-csg.man +[ 3%] Generating csg_call +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_call.out" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake +make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +[ 3%] Built target gitversion-csg make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake --color= -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". -Scanning dependencies of target csg_inverse_build -[ 3%] Generating csg_call make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/build -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_call.out" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake -[ 4%] Generating csg_inverse -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_inverse.out" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 4%] Built target csg_call_build +[ 3%] Built target csg_call_build +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/depend +[ 3%] Built target help2t2t_build +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". +Scanning dependencies of target csg_inverse_build +make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". -[ 4%] Built target csg_inverse_build -make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake --color= +make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/build +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/depend.internal". Scanning dependencies of target csg_inverse_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +[ 4%] Generating csg_inverse +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_inverse.out" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake +[ 5%] Generating csg_inverse +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_inverse.out" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 5%] Generating csg_inverse.man -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-1.6.4/share /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/csg_inverse --help > csg_inverse.help -[ 5%] Built target votca-csg_manpage +[ 5%] Built target csg_inverse_build make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake --color= +[ 6%] Generating csg_inverse.man +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-1.6.4/share /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/csg_inverse --help > csg_inverse.help Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/depend.internal". Scanning dependencies of target csg_call_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/help2t2t csg_inverse.help > csg_inverse.t2t -[ 6%] Generating csg_call.man -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-1.6.4/share /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/csg_call --help > csg_call.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/help2t2t csg_call.help > csg_call.t2t -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_inverse.t2t -o csg_inverse.man Scanning dependencies of target votca_csg make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/build +[ 7%] Generating csg_call.man +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-1.6.4/share /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/csg_call --help > csg_call.help make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_call.t2t -o csg_call.man -[ 7%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/help2t2t csg_inverse.help > csg_inverse.t2t +[ 8%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadlist.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadlist.cc +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/help2t2t csg_call.help > csg_call.t2t make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 8%] Built target csg_inverse_manpage +[ 8%] Built target votca-csg_manpage +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_inverse.t2t -o csg_inverse.man [ 9%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotif.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadmotif.cc +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_call.t2t -o csg_call.man +make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +[ 9%] Built target csg_inverse_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 10%] Built target csg_call_manpage -[ 11%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o +[ 10%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadmotifalgorithms.cc +[ 11%] Built target csg_call_manpage [ 12%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadmotifconnector.cc [ 13%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o @@ -986,10 +1059,6 @@ cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /build/votca-csg-1.6.4/src/libcsg/exclusionlist.cc [ 19%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/imcio.cc.o -c /build/votca-csg-1.6.4/src/libcsg/imcio.cc -[ 20%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/map.cc.o -c /build/votca-csg-1.6.4/src/libcsg/map.cc -[ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/molecule.cc.o -c /build/votca-csg-1.6.4/src/libcsg/molecule.cc In file included from /usr/include/c++/10/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/sign.hpp:17, @@ -1003,14 +1072,22 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 20%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/map.cc.o -c /build/votca-csg-1.6.4/src/libcsg/map.cc /usr/include/c++/10/bits/vector.tcc: In function 'Eigen::MatrixXd votca::csg::imcio_read_matrix(const string&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/molecule.cc.o -c /build/votca-csg-1.6.4/src/libcsg/molecule.cc [ 22%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblist.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblist.cc [ 23%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblist_3body.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblist_3body.cc +[ 24%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblistgrid.cc +[ 25%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblistgrid_3body.cc In file included from /usr/include/c++/10/vector:72, from /usr/include/eigen3/Eigen/SparseCore:15, from /usr/include/eigen3/Eigen/Sparse:26, @@ -1035,10 +1112,6 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 24%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblistgrid.cc -[ 25%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblistgrid_3body.cc [ 26%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nematicorder.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nematicorder.cc [ 27%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o @@ -1486,6 +1559,8 @@ cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpreader.cc [ 47%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc +[ 48%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/pdbreader.cc /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc: In member function 'virtual void votca::csg::LAMMPSDumpWriter::Write(votca::csg::Topology*)': /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc:38:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 38 | fprintf(_out, "ITEM: TIMESTEP\n%ld\n", top->getStep()); @@ -1512,8 +1587,6 @@ | | | | long int votca::Index {aka int} | %i -[ 48%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/pdbreader.cc [ 49%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/pdbwriter.cc [ 50%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o @@ -1536,58 +1609,55 @@ [ 56%] Built target votca_csg make -f src/tools/CMakeFiles/csg_imc_solve.dir/build.make src/tools/CMakeFiles/csg_imc_solve.dir/depend make -f src/tools/CMakeFiles/csg_dlptopol.dir/build.make src/tools/CMakeFiles/csg_dlptopol.dir/depend -make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake --color= +make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake --color= +make -f src/tools/CMakeFiles/csg_stat.dir/build.make src/tools/CMakeFiles/csg_stat.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/depend.internal". -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/depend.internal". -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/depend.internal". Scanning dependencies of target csg_imc_solve -Scanning dependencies of target csg_dlptopol make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +Scanning dependencies of target csg_dlptopol make -f src/tools/CMakeFiles/csg_imc_solve.dir/build.make src/tools/CMakeFiles/csg_imc_solve.dir/build make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -Scanning dependencies of target csg_fmatch make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dlptopol.dir/build.make src/tools/CMakeFiles/csg_dlptopol.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/build -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 57%] Building CXX object src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_imc_solve.cc -[ 58%] Building CXX object src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_fmatch.cc -[ 59%] Building CXX object src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_dlptopol.cc -[ 60%] Linking CXX executable csg_dlptopol -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dlptopol.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o csg_dlptopol -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 -make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 60%] Built target csg_dlptopol -make -f src/tools/CMakeFiles/csg_stat.dir/build.make src/tools/CMakeFiles/csg_stat.dir/depend -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake --color= +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/depend.internal". +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/depend.internal". +Scanning dependencies of target csg_fmatch +make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/build Scanning dependencies of target csg_stat +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_stat.dir/build.make src/tools/CMakeFiles/csg_stat.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 61%] Building CXX object src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o +[ 57%] Building CXX object src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o +[ 58%] Building CXX object src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_imc_solve.cc +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_dlptopol.cc +[ 59%] Building CXX object src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_fmatch.cc +[ 60%] Building CXX object src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_stat.dir/csg_stat.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_stat.cc -[ 62%] Linking CXX executable csg_imc_solve -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_imc_solve.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg_imc_solve -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 61%] Building CXX object src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_stat_imc.cc +[ 62%] Linking CXX executable csg_dlptopol +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dlptopol.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o csg_dlptopol -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 62%] Built target csg_imc_solve +[ 62%] Built target csg_dlptopol make -f src/tools/CMakeFiles/csg_reupdate.dir/build.make src/tools/CMakeFiles/csg_reupdate.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake --color= @@ -1599,13 +1669,11 @@ make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 63%] Building CXX object src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_reupdate.cc -[ 64%] Building CXX object src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_stat_imc.cc -[ 65%] Linking CXX executable csg_fmatch -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_fmatch.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o csg_fmatch -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 64%] Linking CXX executable csg_imc_solve +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_imc_solve.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg_imc_solve -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 65%] Built target csg_fmatch +[ 64%] Built target csg_imc_solve make -f src/tools/CMakeFiles/csg_map.dir/build.make src/tools/CMakeFiles/csg_map.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake --color= @@ -1615,13 +1683,13 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_map.dir/build.make src/tools/CMakeFiles/csg_map.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 66%] Building CXX object src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o +[ 65%] Building CXX object src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_map.dir/csg_map.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_map.cc -[ 67%] Linking CXX executable csg_stat +[ 66%] Linking CXX executable csg_stat cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_stat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_stat.dir/csg_stat.cc.o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -o csg_stat -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 67%] Built target csg_stat +[ 66%] Built target csg_stat make -f src/tools/CMakeFiles/csg_gmxtopol.dir/build.make src/tools/CMakeFiles/csg_gmxtopol.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol.dir/DependInfo.cmake --color= @@ -1631,13 +1699,13 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_gmxtopol.dir/build.make src/tools/CMakeFiles/csg_gmxtopol.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 68%] Building CXX object src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o +[ 67%] Building CXX object src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_gmxtopol.cc -[ 69%] Linking CXX executable csg_reupdate -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_reupdate.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -o csg_reupdate -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 68%] Linking CXX executable csg_map +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_map.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_map.dir/csg_map.cc.o -o csg_map -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 69%] Built target csg_reupdate +[ 68%] Built target csg_map make -f src/tools/CMakeFiles/csg_property.dir/build.make src/tools/CMakeFiles/csg_property.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake --color= @@ -1647,13 +1715,13 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_property.dir/build.make src/tools/CMakeFiles/csg_property.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 70%] Building CXX object src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o +[ 69%] Building CXX object src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_property.dir/csg_property.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_property.cc -[ 71%] Linking CXX executable csg_map -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_map.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_map.dir/csg_map.cc.o -o csg_map -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 70%] Linking CXX executable csg_fmatch +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_fmatch.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o csg_fmatch -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 71%] Built target csg_map +[ 70%] Built target csg_fmatch make -f src/tools/CMakeFiles/csg_dump.dir/build.make src/tools/CMakeFiles/csg_dump.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake --color= @@ -1663,13 +1731,13 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dump.dir/build.make src/tools/CMakeFiles/csg_dump.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 72%] Building CXX object src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o +[ 71%] Building CXX object src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_dump.dir/csg_dump.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_dump.cc -[ 73%] Linking CXX executable csg_property -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_property.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_property.dir/csg_property.cc.o -o csg_property -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 72%] Linking CXX executable csg_reupdate +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_reupdate.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -o csg_reupdate -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 73%] Built target csg_property +[ 72%] Built target csg_reupdate make -f src/tools/CMakeFiles/csg_resample.dir/build.make src/tools/CMakeFiles/csg_resample.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake --color= @@ -1679,11 +1747,14 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_resample.dir/build.make src/tools/CMakeFiles/csg_resample.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 74%] Building CXX object src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o +[ 73%] Building CXX object src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_resample.dir/csg_resample.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_resample.cc -[ 75%] Linking CXX executable csg_gmxtopol +[ 74%] Linking CXX executable csg_gmxtopol cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_gmxtopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -o csg_gmxtopol -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 75%] Linking CXX executable csg_property +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_property.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_property.dir/csg_property.cc.o -o csg_property -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 75%] Built target csg_gmxtopol make -f src/tools/CMakeFiles/csg_density.dir/build.make src/tools/CMakeFiles/csg_density.dir/depend @@ -1697,11 +1768,8 @@ make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 76%] Building CXX object src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_density.dir/csg_density.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_density.cc -[ 77%] Linking CXX executable csg_dump -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dump.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dump.dir/csg_dump.cc.o -o csg_dump -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 77%] Built target csg_dump +[ 76%] Built target csg_property make -f src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/DependInfo.cmake --color= @@ -1711,13 +1779,13 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 78%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o +[ 77%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/bondedstatistics.cc -[ 79%] Linking CXX executable csg_resample -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_resample.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_resample.dir/csg_resample.cc.o -o csg_resample -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 78%] Linking CXX executable csg_dump +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dump.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dump.dir/csg_dump.cc.o -o csg_dump -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 79%] Built target csg_resample +[ 78%] Built target csg_dump make -f share/template/CMakeFiles/template_threaded.dir/build.make share/template/CMakeFiles/template_threaded.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake --color= @@ -1727,8 +1795,24 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f share/template/CMakeFiles/template_threaded.dir/build.make share/template/CMakeFiles/template_threaded.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 80%] Building CXX object share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o +[ 79%] Building CXX object share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/template_threaded.dir/template_threaded.cc.o -c /build/votca-csg-1.6.4/share/template/template_threaded.cc +[ 80%] Linking CXX executable csg_resample +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_resample.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_resample.dir/csg_resample.cc.o -o csg_resample -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +[ 80%] Built target csg_resample +make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/depend +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake --color= +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/depend.internal". +Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/depend.internal". +Scanning dependencies of target template_serial +make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/build +make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +[ 81%] Building CXX object share/template/CMakeFiles/template_serial.dir/template_serial.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/template_serial.dir/template_serial.cc.o -c /build/votca-csg-1.6.4/share/template/template_serial.cc In file included from /usr/include/c++/10/vector:72, from /build/votca-csg-1.6.4/include/votca/csg/topology.h:25, from /build/votca-csg-1.6.4/include/votca/csg/cgobserver.h:21, @@ -1742,31 +1826,13 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o +[ 82%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/stdanalysis.cc -[ 82%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/tabulatedpotential.cc [ 83%] Linking CXX executable csg_density cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_density.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_density.dir/csg_density.cc.o -o csg_density -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 83%] Built target csg_density -make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/depend -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake --color= -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/depend.internal". -Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/depend.internal". -Scanning dependencies of target template_serial -make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/build -make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 84%] Building CXX object share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/template_serial.dir/template_serial.cc.o -c /build/votca-csg-1.6.4/share/template/template_serial.cc -[ 85%] Linking CXX executable template_threaded -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_threaded.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_threaded.dir/template_threaded.cc.o -o template_threaded -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 -make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 85%] Built target template_threaded make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake --color= @@ -1776,12 +1842,12 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 86%] Generating csg_imc_solve.man +[ 84%] Generating csg_imc_solve.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_imc_solve --help > csg_imc_solve.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_imc_solve.help > csg_imc_solve.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_imc_solve.help > csg_imc_solve.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_imc_solve.t2t -o csg_imc_solve.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 86%] Built target csg_imc_solve_manpage +[ 84%] Built target csg_imc_solve_manpage make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake --color= @@ -1791,9 +1857,14 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 87%] Generating csg_dlptopol.man +[ 85%] Generating csg_dlptopol.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_dlptopol --help > csg_dlptopol.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_dlptopol.help > csg_dlptopol.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_dlptopol.help > csg_dlptopol.t2t +[ 86%] Linking CXX executable template_threaded +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_threaded.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_threaded.dir/template_threaded.cc.o -o template_threaded -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 +[ 87%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/tabulatedpotential.cc cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_dlptopol.t2t -o csg_dlptopol.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 87%] Built target csg_dlptopol_manpage @@ -1808,10 +1879,10 @@ make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 88%] Generating csg_fmatch.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_fmatch --help > csg_fmatch.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_fmatch.help > csg_fmatch.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_fmatch.help > csg_fmatch.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_fmatch.t2t -o csg_fmatch.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 88%] Built target csg_fmatch_manpage +[ 88%] Built target template_threaded make -f src/tools/CMakeFiles/csg_stat_manpage.dir/build.make src/tools/CMakeFiles/csg_stat_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake --color= @@ -1823,10 +1894,10 @@ make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 89%] Generating csg_stat.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_stat --help > csg_stat.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_stat.help > csg_stat.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_stat.help > csg_stat.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_stat.t2t -o csg_stat.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 89%] Built target csg_stat_manpage +[ 89%] Built target csg_fmatch_manpage make -f src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake --color= @@ -1838,25 +1909,28 @@ make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 90%] Generating csg_reupdate.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_reupdate --help > csg_reupdate.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_reupdate.help > csg_reupdate.t2t -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_reupdate.t2t -o csg_reupdate.man +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_reupdate.help > csg_reupdate.t2t make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 90%] Built target csg_reupdate_manpage +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_reupdate.t2t -o csg_reupdate.man +[ 90%] Built target csg_stat_manpage make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/depend +[ 91%] Linking CXX executable template_serial +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_serial.dir/link.txt --verbose=1 make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/depend.internal". Scanning dependencies of target csg_map_manpage +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_serial.dir/template_serial.cc.o -o template_serial -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 91%] Generating csg_map.man +[ 92%] Generating csg_map.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_map --help > csg_map.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_map.help > csg_map.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_map.help > csg_map.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_map.t2t -o csg_map.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 91%] Built target csg_map_manpage +[ 92%] Built target csg_reupdate_manpage make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake --color= @@ -1866,12 +1940,12 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 92%] Generating csg_gmxtopol.man +[ 93%] Generating csg_gmxtopol.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_gmxtopol --help > csg_gmxtopol.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_gmxtopol.help > csg_gmxtopol.t2t -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_gmxtopol.t2t -o csg_gmxtopol.man +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_gmxtopol.help > csg_gmxtopol.t2t make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 92%] Built target csg_gmxtopol_manpage +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_gmxtopol.t2t -o csg_gmxtopol.man +[ 93%] Built target template_serial make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake --color= @@ -1881,12 +1955,11 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 93%] Generating csg_property.man -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_property --help > csg_property.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_property.help > csg_property.t2t -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_property.t2t -o csg_property.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 93%] Built target csg_property_manpage +[ 94%] Generating csg_property.man +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_property --help > csg_property.help +[ 94%] Built target csg_map_manpage +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_property.help > csg_property.t2t make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake --color= @@ -1896,12 +1969,13 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 94%] Generating csg_dump.man +[ 95%] Generating csg_dump.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_dump --help > csg_dump.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_dump.help > csg_dump.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_property.t2t -o csg_property.man +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_dump.help > csg_dump.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_dump.t2t -o csg_dump.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 94%] Built target csg_dump_manpage +[ 95%] Built target csg_gmxtopol_manpage make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake --color= @@ -1911,34 +1985,38 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 95%] Generating csg_resample.man +[ 96%] Generating csg_resample.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_resample --help > csg_resample.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_resample.help > csg_resample.t2t -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_resample.t2t -o csg_resample.man +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_resample.help > csg_resample.t2t make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 95%] Built target csg_resample_manpage +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_resample.t2t -o csg_resample.man +[ 96%] Built target csg_property_manpage make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +[ 96%] Built target csg_dump_manpage Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/depend.internal". Scanning dependencies of target csg_density_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 96%] Generating csg_density.man +[ 97%] Generating csg_density.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_density --help > csg_density.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_density.help > csg_density.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_density.help > csg_density.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_density.t2t -o csg_density.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 96%] Built target csg_density_manpage -[ 97%] Linking CXX static library libvotca_csg_boltzmann.a +[ 97%] Built target csg_resample_manpage +make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' +[ 97%] Built target csg_density_manpage +[ 98%] Linking CXX static library libvotca_csg_boltzmann.a cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/cmake -P CMakeFiles/votca_csg_boltzmann.dir/cmake_clean_target.cmake cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/ar qc libvotca_csg_boltzmann.a CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o /usr/bin/ranlib libvotca_csg_boltzmann.a make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 97%] Built target votca_csg_boltzmann +[ 98%] Built target votca_csg_boltzmann make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake --color= @@ -1948,13 +2026,8 @@ make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 97%] Building CXX object src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o +[ 98%] Building CXX object src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_boltzmann.dir/main.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/main.cc -[ 98%] Linking CXX executable template_serial -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_serial.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_serial.dir/template_serial.cc.o -o template_serial -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 -make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' -[ 98%] Built target template_serial [ 99%] Linking CXX executable csg_boltzmann cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_boltzmann.dir/main.cc.o -o csg_boltzmann -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: libvotca_csg_boltzmann.a ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 @@ -1971,7 +2044,7 @@ make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [100%] Generating csg_boltzmann.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && ./csg_boltzmann --help > csg_boltzmann.help -cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/../../scripts/help2t2t csg_boltzmann.help > csg_boltzmann.t2t +cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/../../scripts/help2t2t csg_boltzmann.help > csg_boltzmann.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/txt2tags -q -t man -i csg_boltzmann.t2t -o csg_boltzmann.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [100%] Built target csg_boltzmann_manpage @@ -1996,7 +2069,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/votca-csg-1.6.4' dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/votca-csg-1.6.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/votca-csg-1.6.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/votca-csg-1.6.4 -B/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2255,30 +2328,30 @@ dh_strip -a dh_makeshlibs -a dh_shlibdeps -a +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_map contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_dump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_reupdate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_stat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_gmxtopol contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_fmatch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_property contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_boltzmann contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_density contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_dump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_imc_solve contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_property contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_dlptopol contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_fmatch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libvotca-csg6/usr/lib/arm-linux-gnueabihf/libvotca_csg.so.6 found in none of the libraries -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_imc_solve contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_resample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_reupdate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_map contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_stat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_boltzmann contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package votca-csg-scripts: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'votca-csg-scripts' in '../votca-csg-scripts_1.6.4-1_all.deb'. dpkg-deb: building package 'libvotca-csg-dev' in '../libvotca-csg-dev_1.6.4-1_armhf.deb'. +dpkg-deb: building package 'libvotca-csg6-dbgsym' in '../libvotca-csg6-dbgsym_1.6.4-1_armhf.deb'. +dpkg-deb: building package 'votca-csg-tutorials' in '../votca-csg-tutorials_1.6.4-1_all.deb'. dpkg-deb: building package 'votca-csg-dbgsym' in '../votca-csg-dbgsym_1.6.4-1_armhf.deb'. dpkg-deb: building package 'libvotca-csg6' in '../libvotca-csg6_1.6.4-1_armhf.deb'. -dpkg-deb: building package 'votca-csg-tutorials' in '../votca-csg-tutorials_1.6.4-1_all.deb'. -dpkg-deb: building package 'libvotca-csg6-dbgsym' in '../libvotca-csg6-dbgsym_1.6.4-1_armhf.deb'. +dpkg-deb: building package 'votca-csg-scripts' in '../votca-csg-scripts_1.6.4-1_all.deb'. dpkg-deb: building package 'votca-csg' in '../votca-csg_1.6.4-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../votca-csg_1.6.4-1_armhf.changes @@ -2287,12 +2360,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/28070/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/28070/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/19292 and its subdirectories -I: Current time: Sat Jul 24 05:35:20 -12 2021 -I: pbuilder-time-stamp: 1627148120 +I: removing directory /srv/workspace/pbuilder/28070 and its subdirectories +I: Current time: Sun Jul 25 08:03:03 +14 2021 +I: pbuilder-time-stamp: 1627149783