Diff of the two buildlogs: -- --- b1/build.log 2021-07-22 17:13:32.042130889 +0000 +++ b2/build.log 2021-07-22 17:19:28.020823971 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 22 05:09:50 -12 2021 -I: pbuilder-time-stamp: 1626973790 +I: Current time: Fri Jul 23 07:15:52 +14 2021 +I: pbuilder-time-stamp: 1626974152 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./seqkit_0.15.0+ds-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.aPVPuDkh/trustedkeys.kbx': General error -gpgv: Signature made Wed Jan 27 08:38:32 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.c3BIAocJ/trustedkeys.kbx': General error +gpgv: Signature made Thu Jan 28 10:38:32 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,169 @@ dpkg-source: info: applying spellings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23849/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/15286/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/15286/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/15286/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='7447868af77e4004b34178a7f67a8bb0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23849' - PS1='# ' - PS2='> ' + INVOCATION_ID=c7898c79211243dd8274771dbc3c76b0 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=15286 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.YsDTwdJ2Vx/pbuilderrc_IqV3 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.YsDTwdJ2Vx/b1 --logfile b1/build.log seqkit_0.15.0+ds-2.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.YsDTwdJ2Vx/pbuilderrc_K3DS --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.YsDTwdJ2Vx/b2 --logfile b2/build.log --extrapackages usrmerge seqkit_0.15.0+ds-2.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt32c 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-1 (2021-06-24) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 21 21:24 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/23849/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 23 07:16 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 22 23:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/15286/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -356,7 +390,7 @@ Get: 118 http://deb.debian.org/debian bullseye/main armhf libhts3 armhf 1.11-4 [332 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf samtools armhf 1.11-1 [519 kB] -Fetched 109 MB in 12s (8993 kB/s) +Fetched 109 MB in 10s (11.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -851,8 +885,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1163 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37271 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/seqkit-0.15.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqkit_0.15.0+ds-2_source.changes +hostname: Name or service not known +I: Running cd /build/seqkit-0.15.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqkit_0.15.0+ds-2_source.changes dpkg-buildpackage: info: source package seqkit dpkg-buildpackage: info: source version 0.15.0+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -870,21 +941,21 @@ dh_autoreconf -O--buildsystem=golang -O--builddirectory=build dh_auto_configure -O--buildsystem=golang -O--builddirectory=build dh_auto_build -O--buildsystem=golang -O--builddirectory=build - cd build && go install -trimpath -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go install -trimpath -v -p 4 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd internal/unsafeheader -runtime/internal/sys -internal/cpu math/bits -runtime/internal/math +internal/cpu +runtime/internal/sys unicode/utf8 +runtime/internal/math internal/bytealg runtime/internal/atomic math internal/race sync/atomic -runtime unicode internal/testlog +runtime golang.org/x/sys/internal/unsafeheader internal/nettrace runtime/cgo @@ -908,196 +979,196 @@ github.com/shenwei356/util/randutil errors sort -strconv -io internal/oserror -strings +io +strconv syscall +vendor/golang.org/x/net/dns/dnsmessage +strings reflect -github.com/biogo/biogo/feat bytes +github.com/biogo/biogo/feat +path +regexp/syntax bufio internal/syscall/unix time internal/syscall/execenv -vendor/golang.org/x/net/dns/dnsmessage +text/tabwriter +hash +hash/crc32 +regexp +container/heap +image internal/poll -context internal/fmtsort encoding/binary +context os -path -regexp/syntax +image/internal/imageutil +hash/adler32 +image/draw +image/jpeg golang.org/x/sys/unix +golang.org/x/image/draw +golang.org/x/image/ccitt fmt net github.com/biogo/biogo/alphabet github.com/biogo/biogo/seq -github.com/biogo/biogo/io/seqio -github.com/biogo/biogo/seq/linear -github.com/biogo/biogo/io/seqio/fasta github.com/mattn/go-isatty -github.com/shenwei356/seqkit/benchmark github.com/mattn/go-colorable log +github.com/biogo/biogo/io/seqio +github.com/biogo/biogo/seq/linear +github.com/biogo/biogo/io/seqio/fasta path/filepath -regexp -text/tabwriter github.com/biogo/biogo/align +github.com/shenwei356/seqkit/benchmark compress/flate -hash -hash/crc32 compress/gzip -container/heap encoding/hex github.com/biogo/hts/bgzf net/url -github.com/biogo/hts/bgzf/index golang.org/x/term +golang.org/x/image/math/fixed +github.com/biogo/hts/bgzf/index github.com/biogo/hts/internal golang.org/x/crypto/ssh/terminal -github.com/biogo/hts/sam -golang.org/x/image/math/fixed -image -image/internal/imageutil -github.com/biogo/hts/bam -log/syslog -image/draw -github.com/op/go-logging -go/token github.com/golang/freetype/raster golang.org/x/image/font +go/token +github.com/biogo/hts/sam +github.com/golang/freetype/truetype go/scanner +go/ast +github.com/biogo/hts/bam +log/syslog internal/lazyregexp io/ioutil -github.com/golang/freetype/truetype -go/ast text/template/parse -go/parser -text/template +github.com/op/go-logging os/exec +go/parser internal/execabs internal/goroot -golang.org/x/image/draw -go/doc gonum.org/v1/plot/vg/fonts -go/build golang.org/x/image/font/basicfont -image/jpeg -hash/adler32 -gonum.org/v1/plot/vg compress/zlib -image/png -gonum.org/v1/plot/vg/vgeps -golang.org/x/image/ccitt +text/template golang.org/x/image/tiff/lzw -crypto +image/png golang.org/x/image/tiff +crypto +crypto/rc4 crypto/md5 github.com/fogleman/gg -crypto/rc4 crypto/sha1 +go/doc encoding/gob encoding/base64 -gonum.org/v1/plot/vg/vgimg encoding/json encoding/xml +go/build compress/lzw -image/gif html -runtime/debug +gonum.org/v1/plot/vg github.com/ajstarks/svgo +image/gif +runtime/debug +gonum.org/v1/plot/vg/vgeps +gonum.org/v1/plot/vg/vgimg github.com/jung-kurt/gofpdf -gonum.org/v1/plot/palette gonum.org/v1/plot/vg/vgsvg +gonum.org/v1/plot/palette gonum.org/v1/plot/tools/bezier github.com/cespare/xxhash -math/big github.com/fsnotify/fsnotify +math/big github.com/iafan/cwalk github.com/logrusorgru/aurora -github.com/cznic/sortutil -github.com/dustin/go-humanize github.com/mitchellh/go-homedir github.com/pkg/errors github.com/klauspost/compress/flate crypto/cipher +github.com/cznic/sortutil +github.com/dustin/go-humanize +github.com/klauspost/pgzip crypto/aes -gonum.org/v1/plot/vg/vgpdf -crypto/rand crypto/des -gonum.org/v1/plot/vg/draw +crypto/rand crypto/elliptic -github.com/klauspost/pgzip -gonum.org/v1/plot crypto/internal/randutil crypto/sha512 encoding/asn1 crypto/ed25519/internal/edwards25519 -gonum.org/v1/plot/plotter -vendor/golang.org/x/crypto/cryptobyte -crypto/ed25519 -crypto/ecdsa crypto/hmac crypto/rsa +gonum.org/v1/plot/vg/vgpdf +vendor/golang.org/x/crypto/cryptobyte crypto/sha256 +gonum.org/v1/plot/vg/draw +crypto/ed25519 crypto/dsa -gonum.org/v1/plot/plotutil crypto/x509/pkix encoding/pem -github.com/bsipos/thist +crypto/ecdsa vendor/golang.org/x/crypto/chacha20 -crypto/x509 +gonum.org/v1/plot vendor/golang.org/x/crypto/poly1305 vendor/golang.org/x/crypto/curve25519 vendor/golang.org/x/crypto/chacha20poly1305 +crypto/x509 vendor/golang.org/x/crypto/hkdf vendor/golang.org/x/text/transform vendor/golang.org/x/text/unicode/bidi +gonum.org/v1/plot/plotter vendor/golang.org/x/text/unicode/norm -crypto/tls vendor/golang.org/x/text/secure/bidirule net/textproto +crypto/tls vendor/golang.org/x/net/http2/hpack +gonum.org/v1/plot/plotutil vendor/golang.org/x/net/idna mime +github.com/bsipos/thist mime/quotedprintable +net/http/internal +mime/multipart vendor/golang.org/x/net/http/httpguts vendor/golang.org/x/net/http/httpproxy -mime/multipart -net/http/internal os/user github.com/shenwei356/bpool -github.com/shenwei356/util/byteutil -net/http/httptrace -github.com/shenwei356/bio/seq -net/http github.com/edsrzf/mmap-go +github.com/shenwei356/util/byteutil github.com/shenwei356/bio/seqio/fai +github.com/shenwei356/bio/seq github.com/shenwei356/bio/util index/suffixarray -github.com/shenwei356/bwt -github.com/shenwei356/bwt/fmi github.com/shenwei356/util/pathutil github.com/shenwei356/natsort github.com/shenwei356/util/stringutil +net/http/httptrace +github.com/shenwei356/bwt +github.com/shenwei356/bwt/fmi gopkg.in/yaml.v2 +net/http encoding/csv flag github.com/spf13/pflag -github.com/smallfish/simpleyaml github.com/mattn/go-runewidth github.com/tatsushid/go-prettytable +github.com/smallfish/simpleyaml os/signal +github.com/spf13/cobra github.com/shenwei356/xopen github.com/shenwei356/breader github.com/shenwei356/bio/seqio/fastx -github.com/spf13/cobra github.com/shenwei356/bio/featio/gtf github.com/shenwei356/seqkit/seqkit/cmd github.com/shenwei356/seqkit/seqkit dh_auto_test -O--buildsystem=golang -O--builddirectory=build - cd build && go test -vet=off -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go test -vet=off -v -p 4 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd ? github.com/shenwei356/seqkit/benchmark [no test files] ? github.com/shenwei356/seqkit/seqkit [no test files] ? github.com/shenwei356/seqkit/seqkit/cmd [no test files] @@ -1105,14 +1176,14 @@ dh_testroot -O--buildsystem=golang -O--builddirectory=build dh_prep -O--buildsystem=golang -O--builddirectory=build debian/rules override_dh_auto_install -make[1]: Entering directory '/build/seqkit-0.15.0+ds' +make[1]: ingresso nella directory «/build/seqkit-0.15.0+ds» dh_auto_install -- --no-source cd build && mkdir -p /build/seqkit-0.15.0\+ds/debian/tmp/usr cd build && cp -r bin /build/seqkit-0.15.0\+ds/debian/tmp/usr -make[1]: Leaving directory '/build/seqkit-0.15.0+ds' +make[1]: uscita dalla directory «/build/seqkit-0.15.0+ds» dh_install -O--buildsystem=golang -O--builddirectory=build debian/rules override_dh_installdocs -make[1]: Entering directory '/build/seqkit-0.15.0+ds' +make[1]: ingresso nella directory «/build/seqkit-0.15.0+ds» # Regenerate bam and bam index files cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam @@ -1121,7 +1192,7 @@ samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai dh_installdocs -make[1]: Leaving directory '/build/seqkit-0.15.0+ds' +make[1]: uscita dalla directory «/build/seqkit-0.15.0+ds» dh_installchangelogs -O--buildsystem=golang -O--builddirectory=build dh_installman -O--buildsystem=golang -O--builddirectory=build dh_installsystemduser -O--buildsystem=golang -O--builddirectory=build @@ -1149,8 +1220,8 @@ dpkg-gencontrol: warning: Depends field of package seqkit-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=golang -O--builddirectory=build dh_builddeb -O--buildsystem=golang -O--builddirectory=build -dpkg-deb: building package 'seqkit' in '../seqkit_0.15.0+ds-2_armhf.deb'. -dpkg-deb: building package 'seqkit-examples' in '../seqkit-examples_0.15.0+ds-2_all.deb'. +dpkg-deb: generazione del pacchetto "seqkit" in "../seqkit_0.15.0+ds-2_armhf.deb". +dpkg-deb: generazione del pacchetto "seqkit-examples" in "../seqkit-examples_0.15.0+ds-2_all.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../seqkit_0.15.0+ds-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1158,12 +1229,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/15286/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/15286/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23849 and its subdirectories -I: Current time: Thu Jul 22 05:13:28 -12 2021 -I: pbuilder-time-stamp: 1626974008 +I: removing directory /srv/workspace/pbuilder/15286 and its subdirectories +I: Current time: Fri Jul 23 07:19:24 +14 2021 +I: pbuilder-time-stamp: 1626974364