Diff of the two buildlogs: -- --- b1/build.log 2021-07-15 10:13:08.028600798 +0000 +++ b2/build.log 2021-07-15 10:35:32.042019036 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 14 22:08:15 -12 2021 -I: pbuilder-time-stamp: 1626343695 +I: Current time: Fri Jul 16 00:14:41 +14 2021 +I: pbuilder-time-stamp: 1626344081 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./python-deeptools_3.5.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.VG1OGWCX/trustedkeys.kbx': General error -gpgv: Signature made Thu Sep 17 01:51:50 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.4p0CehTc/trustedkeys.kbx': General error +gpgv: Signature made Fri Sep 18 03:51:50 2020 +14 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,169 @@ dpkg-source: info: applying python2to3_for_executables.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1913/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/17891/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/17891/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/17891/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='c8d5cc8f57294929b83e7d4851d3cb31' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1913' - PS1='# ' - PS2='> ' + INVOCATION_ID=95f8319a9c634a9e8e5f41d84ff0c1a9 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=17891 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.g9UvZCNzco/pbuilderrc_xn6D --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.g9UvZCNzco/b1 --logfile b1/build.log python-deeptools_3.5.0-1.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.g9UvZCNzco/pbuilderrc_aUzd --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.g9UvZCNzco/b2 --logfile b2/build.log --extrapackages usrmerge python-deeptools_3.5.0-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1c 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-armmp #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 13 21:27 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/1913/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 16 00:17 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 14 23:28 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/17891/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -362,7 +396,7 @@ Get: 140 http://deb.debian.org/debian bullseye/main armhf python3-pybigwig armhf 0.3.17-1+b4 [31.4 kB] Get: 141 http://deb.debian.org/debian bullseye/main armhf python3-pysam armhf 0.15.4+ds-3+b2 [1381 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf python3-scipy armhf 1.6.0-2 [11.3 MB] -Fetched 68.8 MB in 8s (8161 kB/s) +Fetched 68.8 MB in 12s (5532 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -972,8 +1006,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (445 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40444 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/python-deeptools-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-deeptools_3.5.0-1_source.changes +hostname: Name or service not known +I: Running cd /build/python-deeptools-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-deeptools_3.5.0-1_source.changes dpkg-buildpackage: info: source package python-deeptools dpkg-buildpackage: info: source version 3.5.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1026,61 +1097,61 @@ running build running build_py creating /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/getScorePerBigWigBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/writeBedGraph_bam_and_bw.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotCorrelation.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/heatmapper_utilities.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/parserCommon.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/multiBamSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/getScaleFactor.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/utilities.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/misc.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/bamHandler.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/correlation.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/computeGCBias.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/_version.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/multiBigwigSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/__init__.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/plotPCA.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/misc.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/heatmapper_utilities.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/plotEnrichment.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/cm.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotFingerprint.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/alignmentSieve.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/getScorePerBigWigBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/multiBamSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/deeptools_list_tools.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/__init__.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotFingerprint.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/utilities.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/writeBedGraph_bam_and_bw.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/getScaleFactor.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotCorrelation.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/_version.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/getRatio.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/cm.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/bamCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/countReadsPerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/correlation.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/bamCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/bamPEFragmentSize.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/mapReduce.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/multiBigwigSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/bamCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/bamCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools creating /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_heatmapper.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_countReadsPerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_bamCoverage_and_bamCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_heatmapper.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/__init__.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_plotCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_multiBamSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_bamCoverage_and_bamCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test running egg_info creating deepTools.egg-info writing deepTools.egg-info/PKG-INFO @@ -2261,132 +2332,132 @@ deeptools.test.test_plotCoverage.test_plotCoverage_default ... ok Minimal testing ... ok --minMappingQuality 10 --samFlagExclude 512 --ignoreDuplicates -bl ... ok -Test alignmentSieve with the --BED option ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_l944k0r2.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_32pk18bi.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5ta23esr.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_istp0mef.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ajhrczr5.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vs2pxicz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_it4aihpp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ezpt5h9i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_sprhz8ap.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_109tejse.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qdn0edri.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_got27qc1.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_075_k3fp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dyz_azvm.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ucysvqk0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gz2tobbr.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hn0zljhw.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_462ww74l.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__tbbuvr3.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rdmqr57t.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_z_o95s6o.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ygd1q_v0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tqay1fmy.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nfvah5rs.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_sz5nuyl1.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_g5kop5w_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_yreyym32.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7ktzgu82.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8_seh7pb.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_03hwewwv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rdp_ljrx.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hybse1kv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gwkexfor.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_a44s5z5h.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_31o161hq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_3ripku5_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_v4_ecc23.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0od1mmw3.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8eenonsz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_20gymyno.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ywm9prot.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f29u78__.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_yentpprd.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_c9kx7_dj.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9_oncbj1.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xk1xozkc.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4jg6a2le.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vggckxju.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_m3avrzvp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hy0v3ctu.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jtb8mrtg.bam' +Test alignmentSieve with the --BED option ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_w_nhgs0j.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qtp79yc6.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_akl898ci.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_j7_m7yue.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0_ozyr1v.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_av839ujr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1shh6s7s.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_3y5c1v51.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7e1o318i.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mre2lus4.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_niofefps.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_eafc1yl1.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_azd2vlkp.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pz1mgjvv.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4qmt9x5n.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wgddjxze.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4fy4hdw7.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2xk4xzxw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0mhrowqh.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n0m70bjq.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__n2k6wi4.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9scqx7se.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1x3h00ew.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7fz61i43.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mkw7_yrg.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_byyszj_1.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jrgp7gas.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_uw11sbbw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vz_1j075.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_33pu91_q.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_yfrybaeo.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kjcjiamb.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lakzh114.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_74hk9x0m.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_c5hsvc61.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qlyrstef.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_a30xeup6.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_g2ww9eqf.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bns0_p86.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_p30cntue.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nsxf9xlk.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_6mu1gh4d.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2s3td_44.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f9kvkh__.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_86rn7gjj.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dheo65y5.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_i39k7dq3.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8d08cqch.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rfi5wtem.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_zbgw60il.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gvsvzrsx.bam' ok Test filtering a BAM file by MAPQ, flag, and blacklist ... SKIP: Skip this test (see )https://github.com/deeptools/deepTools/issues/903 -Test alignmentSieve --BED --shift ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0dn0r255.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2il4n2bs.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vtxg6rwl.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools___p57raa.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_j8_8hwwm.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_j2kamjy9.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rnshb5zd.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jmcl02_0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vt8b__33.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_drfiyz7d.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_od81z0vc.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5y8oxz0v.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_e6djsnt_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qjnxayc8.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_w9cwppo3.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_44h_27la.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_e6qg54du.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_108omvju.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_igj9pba8.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fua43k2c.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_c2ktzfpm.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vvzt12_c.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k0wzjh3f.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bfyjm1iz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_t3dwwpgs.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_a0xcb2_j.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ukycx1ir.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_798nut02.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fg73pcjh.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_swh0jfiw.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lc0ssgac.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9avse945.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nuuwkalk.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wlutwq6e.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_35ne77wp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cbgqswq2.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vq843sns.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dviph43j.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vazy1x8h.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fttfnrjj.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kooy48i_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0lwztb0z.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9use9hk3.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pf9srrrh.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xzd0n03i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wnqnzskm.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_yweibf38.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9wi2hvfu.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2vb05yjx.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2jy16go6.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_a4so404h.bam' +Test alignmentSieve --BED --shift ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_53w3u4g5.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_p7i88p7a.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_r0hgeq6f.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2oahu411.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kt5y75l8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_na7467ea.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k1b6yu7m.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_18ajq7hv.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kye6o1tj.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ra7uw47h.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_x6no53dl.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_57yasi1g.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_af9tscuq.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tyc_0m1m.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_uyxdrbtb.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_g1l7nk2q.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xo7u0d1r.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lsql5caz.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_3nk8lqll.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_101lc9_0.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rduwjj9o.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bc2zpomv.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_co6szk76.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_w3rs2cet.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_zte320c5.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wj8u04ih.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qancdaxc.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1u6_hk9b.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ymb0ue9b.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_x_az5yle.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ksaggjkc.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lr8qxh5y.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_azrbubk9.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vl3hdli8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f49hl9vq.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_59apora3.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_o6j_hqa2.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lba0xqi4.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_oe64jk57.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n1kaud58.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_39dh_68y.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_loixmurx.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_e1_lrx5p.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jbc5q930.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jx0qffgz.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_et40d4fz.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_s75xhzkr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8x_j988o.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_b1d09fki.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hdne2d0j.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xfjw7hjt.bam' ok -Checks everything that is in /bin/ ... plotProfile 3.5.0 -bamCompare 3.5.0 -plotEnrichment 3.5.0 -plotCoverage 3.5.0 +Checks everything that is in /bin/ ... plotPCA 3.5.0 bamPEFragmentSize 3.5.0 -plotFingerprint 3.5.0 -multiBamSummary 3.5.0 -estimateScaleFactor 3.5.0 -plotPCA 3.5.0 computeGCBias 3.5.0 -deeptools 3.5.0 -correctGCBias 3.5.0 +bigwigCompare 3.5.0 +bamCoverage 3.5.0 +plotCorrelation 3.5.0 +alignmentSieve 3.5.0 estimateReadFiltering 3.5.0 -computeMatrix 3.5.0 +multiBamSummary 3.5.0 plotHeatmap 3.5.0 -bamCoverage 3.5.0 +deeptools 3.5.0 +plotProfile 3.5.0 multiBigwigSummary 3.5.0 -bigwigCompare 3.5.0 -plotCorrelation 3.5.0 +bamCompare 3.5.0 +plotEnrichment 3.5.0 +plotCoverage 3.5.0 computeMatrixOperations 3.5.0 -alignmentSieve 3.5.0 +plotFingerprint 3.5.0 +correctGCBias 3.5.0 +estimateScaleFactor 3.5.0 +computeMatrix 3.5.0 ok The bamFile1 contains a read at position 10 ... ok test_writeBedGraph_worker (deeptools.test.test_writeBedGraph.TestWriteBedGraph) ... ok @@ -2414,13 +2485,13 @@ deeptools.test.testskip_heatmapper_images.test_plotProfiler_multibigwig_pergroup ... ok ---------------------------------------------------------------------- -Ran 108 tests in 29.575s +Ran 108 tests in 146.975s OK (SKIP=1) -MainProcess, processing 3 (9376.2 per sec) reads @ 3R:0-200 -MainProcess countReadsInRegions_worker: processing 4 (7011.0 per sec) @ 3R:0-200 -MainProcess, processing 3 (7710.1 per sec) reads @ 3R:0-200 -MainProcess countReadsInRegions_worker: processing 4 (5862.1 per sec) @ 3R:0-200 +MainProcess, processing 3 (2363.4 per sec) reads @ 3R:0-200 +MainProcess countReadsInRegions_worker: processing 4 (1136.3 per sec) @ 3R:0-200 +MainProcess, processing 3 (1014.4 per sec) reads @ 3R:0-200 +MainProcess countReadsInRegions_worker: processing 4 (913.5 per sec) @ 3R:0-200 Due to filtering, 50.0% of the aforementioned alignments will be used 1.0 Due to filtering, 50.0% of the aforementioned alignments will be used 1.0 There are 193 alignments, of which 7 are completely within a blacklist region. @@ -2441,27 +2512,27 @@ sample mean std min 25% 50% 75% max test1.cram 4.90 5.63 0 0.0 3.0 8.0 25 test2.cram 6.56 6.63 0 0.0 5.0 11.0 25 +plotPCA +bamPEFragmentSize +computeGCBias +bigwigCompare +bamCoverage +plotCorrelation +alignmentSieve +estimateReadFiltering +multiBamSummary +plotHeatmap +deeptools plotProfile +multiBigwigSummary bamCompare plotEnrichment plotCoverage -bamPEFragmentSize +computeMatrixOperations plotFingerprint -multiBamSummary -estimateScaleFactor -plotPCA -computeGCBias -deeptools correctGCBias -estimateReadFiltering +estimateScaleFactor computeMatrix -plotHeatmap -bamCoverage -multiBigwigSummary -bigwigCompare -plotCorrelation -computeMatrixOperations -alignmentSieve make[1]: Leaving directory '/build/python-deeptools-3.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -2493,162 +2564,162 @@ creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9 creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/parserCommon.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamHandler.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/_version.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotPCA.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/misc.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/writeBedGraph.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/heatmapper_utilities.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotEnrichment.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/alignmentSieve.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getScorePerBigWigBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/writeBedGraph_bam_and_bw.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotCorrelation.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/heatmapper_utilities.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/parserCommon.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/multiBamSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deeptools_list_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getScaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/utilities.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/misc.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamHandler.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/writeBedGraph.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeMatrixOperations.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/multiBigwigSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/__init__.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotPCA.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotEnrichment.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/cm.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotFingerprint.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/utilities.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/writeBedGraph_bam_and_bw.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getScaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotCorrelation.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getRatio.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_heatmapper.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_countReadsPerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_bamCoverage_and_bamCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_heatmapper.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/__init__.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_plotCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_multiBamSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/cm.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_bamCoverage_and_bamCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/alignmentSieve.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deeptools_list_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/_version.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getRatio.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/countReadsPerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamPEFragmentSize.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/mapReduce.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/multiBigwigSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/parserCommon.py to parserCommon.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation_heatmap.py to correlation_heatmap.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correctGCBias.py to correctGCBias.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/estimateReadFiltering.py to estimateReadFiltering.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamHandler.py to bamHandler.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeGCBias.py to computeGCBias.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/_version.py to _version.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotPCA.py to plotPCA.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/misc.py to misc.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/writeBedGraph.py to writeBedGraph.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getFragmentAndReadSize.py to getFragmentAndReadSize.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/heatmapper_utilities.py to heatmapper_utilities.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotHeatmap.py to plotHeatmap.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotEnrichment.py to plotEnrichment.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/heatmapper.py to heatmapper.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/alignmentSieve.py to alignmentSieve.cpython-39.pyc +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeMatrix.py to computeMatrix.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getScorePerBigWigBin.py to getScorePerBigWigBin.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotCoverage.py to plotCoverage.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/writeBedGraph_bam_and_bw.py to writeBedGraph_bam_and_bw.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/sumCoveragePerBin.py to sumCoveragePerBin.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotCorrelation.py to plotCorrelation.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/heatmapper_utilities.py to heatmapper_utilities.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/parserCommon.py to parserCommon.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/multiBamSummary.py to multiBamSummary.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deeptools_list_tools.py to deeptools_list_tools.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getScaleFactor.py to getScaleFactor.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotProfile.py to plotProfile.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/utilities.py to utilities.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/misc.py to misc.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamHandler.py to bamHandler.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correctGCBias.py to correctGCBias.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation_heatmap.py to correlation_heatmap.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deepBlue.py to deepBlue.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getFragmentAndReadSize.py to getFragmentAndReadSize.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation.py to correlation.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/writeBedGraph.py to writeBedGraph.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeMatrixOperations.py to computeMatrixOperations.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bigwigCompare.py to bigwigCompare.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/SES_scaleFactor.py to SES_scaleFactor.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeGCBias.py to computeGCBias.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/estimateReadFiltering.py to estimateReadFiltering.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/multiBigwigSummary.py to multiBigwigSummary.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deepBlue.py to deepBlue.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotPCA.py to plotPCA.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotEnrichment.py to plotEnrichment.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/cm.py to cm.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotFingerprint.py to plotFingerprint.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/utilities.py to utilities.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/writeBedGraph_bam_and_bw.py to writeBedGraph_bam_and_bw.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeMatrix.py to computeMatrix.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getScaleFactor.py to getScaleFactor.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotCorrelation.py to plotCorrelation.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotProfile.py to plotProfile.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getRatio.py to getRatio.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_writeBedGraph.py to test_writeBedGraph.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_readFiltering.py to test_readFiltering.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/testskip_heatmapper_images.py to testskip_heatmapper_images.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_heatmapper.py to test_heatmapper.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_countReadsPerBin.py to test_countReadsPerBin.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_tools.py to test_tools.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_bamCoverage_and_bamCompare.py to test_bamCoverage_and_bamCompare.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py to test_bigwigCompare_and_multiBigwigSummary.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_heatmapper.py to test_heatmapper.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_writeBedGraph.py to test_writeBedGraph.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_computeMatrixOperations.py to test_computeMatrixOperations.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_plotCoverage.py to test_plotCoverage.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/testskip_heatmapper_images.py to testskip_heatmapper_images.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_multiBamSummary.py to test_multiBamSummary.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_readFiltering.py to test_readFiltering.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_computeMatrixOperations.py to test_computeMatrixOperations.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/cm.py to cm.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamCoverage.py to bamCoverage.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_bamCoverage_and_bamCompare.py to test_bamCoverage_and_bamCompare.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_tools.py to test_tools.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/alignmentSieve.py to alignmentSieve.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deeptools_list_tools.py to deeptools_list_tools.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/heatmapper.py to heatmapper.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/_version.py to _version.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getRatio.py to getRatio.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotHeatmap.py to plotHeatmap.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/countReadsPerBin.py to countReadsPerBin.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation.py to correlation.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamCompare.py to bamCompare.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamPEFragmentSize.py to bamPEFragmentSize.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/mapReduce.py to mapReduce.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/multiBigwigSummary.py to multiBigwigSummary.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/sumCoveragePerBin.py to sumCoveragePerBin.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamCoverage.py to bamCoverage.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/SES_scaleFactor.py to SES_scaleFactor.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bigwigCompare.py to bigwigCompare.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamCompare.py to bamCompare.cpython-39.pyc running install_egg_info Copying deepTools.egg-info to /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deepTools-3.5.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotPCA -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/bamPEFragmentSize -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/computeGCBias -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/bigwigCompare -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/bamCoverage -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotCorrelation -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/alignmentSieve -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/estimateReadFiltering -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/multiBamSummary -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotHeatmap -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/deeptools -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/plotProfile -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/multiBigwigSummary -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/bamCompare -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/plotEnrichment -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/plotCoverage -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/bamPEFragmentSize -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/computeMatrixOperations -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/plotFingerprint -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/multiBamSummary -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/estimateScaleFactor -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotPCA -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/computeGCBias -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/deeptools -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/correctGCBias -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/estimateReadFiltering -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/estimateScaleFactor -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/computeMatrix -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotHeatmap -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/bamCoverage -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/multiBigwigSummary -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/bigwigCompare -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotCorrelation -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/computeMatrixOperations -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/alignmentSieve -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotPCA to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamPEFragmentSize to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeGCBias to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bigwigCompare to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamCoverage to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotCorrelation to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/alignmentSieve to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateReadFiltering to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/multiBamSummary to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotHeatmap to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/deeptools to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotProfile to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/multiBigwigSummary to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamCompare to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotEnrichment to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotCoverage to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamPEFragmentSize to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeMatrixOperations to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotFingerprint to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/multiBamSummary to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateScaleFactor to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotPCA to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeGCBias to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/deeptools to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/correctGCBias to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateReadFiltering to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateScaleFactor to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeMatrix to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotHeatmap to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamCoverage to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/multiBigwigSummary to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bigwigCompare to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotCorrelation to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeMatrixOperations to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/alignmentSieve to 755 dh_installdocs -O--buildsystem=pybuild install -d debian/python3-deeptools/usr/share/doc/python3-deeptools install -d debian/.debhelper/generated/python3-deeptools @@ -2677,7 +2748,7 @@ D: dh_python3 pydist:142: trying to find dependency for pyBigWig>=0.2.1 (python=None) D: dh_python3 pydist:142: trying to find dependency for pysam>=0.14.0 (python=None) D: dh_python3 pydist:142: trying to find dependency for scipy>=0.17.0 (python=None) -D: dh_python3 depends:275: D={'python3-numpydoc', 'python3-pybigwig', 'python3-numpy', 'python3-scipy (>=0.17.0)', 'python3-py2bit', 'python3-deeptoolsintervals', 'python3:any', 'python3-plotly (>=2.0.0)', 'python3-matplotlib (>=2.1.2)', 'python3-pysam (>=0.14.0)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:275: D={'python3-numpy', 'python3-py2bit', 'python3-matplotlib (>=2.1.2)', 'python3-deeptoolsintervals', 'python3:any', 'python3-plotly (>=2.0.0)', 'python3-scipy (>=0.17.0)', 'python3-numpydoc', 'python3-pysam (>=0.14.0)', 'python3-pybigwig'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -2722,12 +2793,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/17891/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/17891/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1913 and its subdirectories -I: Current time: Wed Jul 14 22:13:03 -12 2021 -I: pbuilder-time-stamp: 1626343983 +I: removing directory /srv/workspace/pbuilder/17891 and its subdirectories +I: Current time: Fri Jul 16 00:35:27 +14 2021 +I: pbuilder-time-stamp: 1626345327