Diff of the two buildlogs: -- --- b1/build.log 2021-07-21 14:35:19.451964580 +0000 +++ b2/build.log 2021-07-21 14:53:15.951078539 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 21 02:20:55 -12 2021 -I: pbuilder-time-stamp: 1626877255 +I: Current time: Thu Jul 22 04:35:41 +14 2021 +I: pbuilder-time-stamp: 1626878141 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./phat_1.6-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.zEaypo2s/trustedkeys.kbx': General error -gpgv: Signature made Sat Jan 23 05:28:21 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.aAUmweJ4/trustedkeys.kbx': General error +gpgv: Signature made Sun Jan 24 07:28:21 2021 +14 gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA gpgv: issuer "gspr@nonempty.org" gpgv: Can't check signature: No public key @@ -29,135 +29,169 @@ dpkg-source: info: applying 0001-Don-t-force-CMAKE_BUILD_TYPE-Release.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21101/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10335/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10335/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10335/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='7cae9674cdd54f8cb34243a36f5f9466' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21101' - PS1='# ' - PS2='> ' + INVOCATION_ID=5b8e04c4811f4962b9f633661eec3049 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10335 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.eN1ZFihO03/pbuilderrc_yuiP --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.eN1ZFihO03/b1 --logfile b1/build.log phat_1.6-2.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.eN1ZFihO03/pbuilderrc_xHvs --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.eN1ZFihO03/b2 --logfile b2/build.log --extrapackages usrmerge phat_1.6-2.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux ff4a 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-1 (2021-06-24) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 20 21:27 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/21101/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 22 04:36 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 21 23:30 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/10335/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -284,7 +318,7 @@ Get: 79 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf python3-pybind11 all 2.6.2-1 [166 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] -Fetched 37.7 MB in 4s (10.5 MB/s) +Fetched 37.7 MB in 6s (6043 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -625,8 +659,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (911 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25917 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/phat-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phat_1.6-2_source.changes +hostname: Name or service not known +I: Running cd /build/phat-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../phat_1.6-2_source.changes dpkg-buildpackage: info: source package phat dpkg-buildpackage: info: source version 1.6-2 dpkg-buildpackage: info: source distribution unstable @@ -684,7 +755,7 @@ -- Build files have been written to: /build/phat-1.6/build dh_auto_build -O--buildsystem=cmake -O--builddirectory=build - cd build && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/phat-1.6/build' /usr/bin/cmake -S/build/phat-1.6 -B/build/phat-1.6/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/phat-1.6/build/CMakeFiles /build/phat-1.6/build//CMakeFiles/progress.marks @@ -695,34 +766,54 @@ make -f CMakeFiles/phat.dir/build.make CMakeFiles/phat.dir/depend make[3]: Entering directory '/build/phat-1.6/build' cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/convert.dir/DependInfo.cmake --color= +make -f CMakeFiles/info.dir/build.make CMakeFiles/info.dir/depend make[3]: Entering directory '/build/phat-1.6/build' cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/benchmark.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/phat-1.6/build' cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/phat.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/phat-1.6/build' +cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/info.dir/DependInfo.cmake --color= +Dependee "/build/phat-1.6/build/CMakeFiles/phat.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/phat.dir/depend.internal". Dependee "/build/phat-1.6/build/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/benchmark.dir/depend.internal". Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/benchmark.dir/depend.internal". +Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/phat.dir/depend.internal". +Dependee "/build/phat-1.6/build/CMakeFiles/info.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/info.dir/depend.internal". +Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/info.dir/depend.internal". Dependee "/build/phat-1.6/build/CMakeFiles/convert.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/convert.dir/depend.internal". Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/convert.dir/depend.internal". +Scanning dependencies of target info Scanning dependencies of target convert -Dependee "/build/phat-1.6/build/CMakeFiles/phat.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/phat.dir/depend.internal". -Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/phat.dir/depend.internal". +make[3]: Leaving directory '/build/phat-1.6/build' make[3]: Leaving directory '/build/phat-1.6/build' make -f CMakeFiles/convert.dir/build.make CMakeFiles/convert.dir/build -Scanning dependencies of target benchmark +make -f CMakeFiles/info.dir/build.make CMakeFiles/info.dir/build make[3]: Entering directory '/build/phat-1.6/build' -make[3]: Leaving directory '/build/phat-1.6/build' -make -f CMakeFiles/benchmark.dir/build.make CMakeFiles/benchmark.dir/build -Scanning dependencies of target phat make[3]: Entering directory '/build/phat-1.6/build' +Scanning dependencies of target phat +Scanning dependencies of target benchmark make[3]: Leaving directory '/build/phat-1.6/build' make -f CMakeFiles/phat.dir/build.make CMakeFiles/phat.dir/build +make[3]: Leaving directory '/build/phat-1.6/build' +make[3]: Entering directory '/build/phat-1.6/build' +make -f CMakeFiles/benchmark.dir/build.make CMakeFiles/benchmark.dir/build +[ 16%] Building CXX object CMakeFiles/info.dir/src/info.cpp.o +[ 16%] Building CXX object CMakeFiles/convert.dir/src/convert.cpp.o make[3]: Entering directory '/build/phat-1.6/build' -[ 8%] Building CXX object CMakeFiles/convert.dir/src/convert.cpp.o -[ 16%] Building CXX object CMakeFiles/benchmark.dir/src/benchmark.cpp.o /usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/convert.dir/src/convert.cpp.o -c /build/phat-1.6/src/convert.cpp -/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/benchmark.dir/src/benchmark.cpp.o -c /build/phat-1.6/src/benchmark.cpp -[ 25%] Building CXX object CMakeFiles/phat.dir/src/phat.cpp.o +/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/info.dir/src/info.cpp.o -c /build/phat-1.6/src/info.cpp +[ 33%] Building CXX object CMakeFiles/benchmark.dir/src/benchmark.cpp.o +[ 33%] Building CXX object CMakeFiles/phat.dir/src/phat.cpp.o /usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/phat.dir/src/phat.cpp.o -c /build/phat-1.6/src/phat.cpp +/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/benchmark.dir/src/benchmark.cpp.o -c /build/phat-1.6/src/benchmark.cpp +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/representations/default_representations.h:21, @@ -735,6 +826,15 @@ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/representations/default_representations.h:21, from /build/phat-1.6/src/convert.cpp:20: /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': @@ -743,6 +843,18 @@ | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/representations/default_representations.h:21, from /build/phat-1.6/src/convert.cpp:20: /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': @@ -755,6 +867,39 @@ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'phat::index phat::boundary_matrix::get_max_row_entries() const [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/phat-1.6/src/info.cpp:19: +/build/phat-1.6/include/phat/boundary_matrix.h:133:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 133 | } + | ^ +/build/phat-1.6/include/phat/boundary_matrix.h:133:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 509 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/representations/default_representations.h:21, from /build/phat-1.6/src/convert.cpp:20: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': @@ -769,6 +914,14 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::init(phat::index)': +/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 960 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/include/phat/representations/default_representations.h:23, from /build/phat-1.6/src/convert.cpp:20: /build/phat-1.6/include/phat/representations/Pivot_representation.h:101:135: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 @@ -782,6 +935,10 @@ /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In member function 'phat::index phat::boundary_matrix::get_num_rows(phat::index) const [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/representations/default_representations.h:21, @@ -790,6 +947,19 @@ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/phat-1.6/src/info.cpp:19: +/build/phat-1.6/include/phat/boundary_matrix.h:108:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 108 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/representations/default_representations.h:21, @@ -798,6 +968,27 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/representations/default_representations.h:21, @@ -813,6 +1004,10 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/phat-1.6/src/info.cpp:19: +/build/phat-1.6/include/phat/boundary_matrix.h:295:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 295 | } + | ^ In file included from /build/phat-1.6/src/convert.cpp:22: /build/phat-1.6/include/phat/helpers/dualize.h:66:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 66 | } @@ -850,13 +1045,21 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/boundary_matrix.h:21, + from /build/phat-1.6/src/info.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/phat-1.6/src/convert.cpp:85:1: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 85 | } | ^ /build/phat-1.6/src/convert.cpp:85:1: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -[ 33%] Linking CXX executable convert -/usr/bin/cmake -E cmake_link_script CMakeFiles/convert.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/convert.dir/src/convert.cpp.o -o convert In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -871,27 +1074,14 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/phat-1.6/build' /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 33%] Built target convert -make -f CMakeFiles/info.dir/build.make CMakeFiles/info.dir/depend -make[3]: Entering directory '/build/phat-1.6/build' -cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/info.dir/DependInfo.cmake --color= -Dependee "/build/phat-1.6/build/CMakeFiles/info.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/info.dir/depend.internal". -Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/info.dir/depend.internal". -Scanning dependencies of target info -make[3]: Leaving directory '/build/phat-1.6/build' -make -f CMakeFiles/info.dir/build.make CMakeFiles/info.dir/build -make[3]: Entering directory '/build/phat-1.6/build' /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/info.dir/src/info.cpp.o -/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/info.dir/src/info.cpp.o -c /build/phat-1.6/src/info.cpp /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); @@ -945,6 +1135,7 @@ /usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +[ 41%] Linking CXX executable convert /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, @@ -956,6 +1147,8 @@ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/cmake -E cmake_link_script CMakeFiles/convert.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/convert.dir/src/convert.cpp.o -o convert /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1969:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1969 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, @@ -974,30 +1167,6 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = std::_Rb_tree_const_iterator; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 300 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -1012,6 +1181,16 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = std::_Rb_tree_const_iterator; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 300 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); @@ -1024,10 +1203,6 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS3_EES2_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); @@ -1036,27 +1211,22 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS3_EES2_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Linking CXX executable info +/usr/bin/cmake -E cmake_link_script CMakeFiles/info.dir/link.txt --verbose=1 /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/info.dir/src/info.cpp.o -o info /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, @@ -1067,20 +1237,13 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ +make[3]: Leaving directory '/build/phat-1.6/build' /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -1093,22 +1256,7 @@ /usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::get_col_and_clear(phat::column&)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[3]: Leaving directory '/build/phat-1.6/build' /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, @@ -1120,32 +1268,6 @@ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column_rep::_prune()': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 385 | std::__make_heap(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1969:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1969 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, @@ -1174,113 +1296,61 @@ 300 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/phat.cpp:26: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 55 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/phat.cpp:26: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 62 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column_rep::_add_to(const Self&)': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column::prune()': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::get_col_and_clear(phat::column&)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -1290,16 +1360,23 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column_rep::_prune()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, @@ -1314,136 +1391,89 @@ from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/phat-1.6/src/phat.cpp:26: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 55 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 385 | std::__make_heap(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'phat::index phat::boundary_matrix::get_max_row_entries() const [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/info.cpp:19: -/build/phat-1.6/include/phat/boundary_matrix.h:133:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 133 | } - | ^ -/build/phat-1.6/include/phat/boundary_matrix.h:133:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 509 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::init(phat::index)': -/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 960 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/phat-1.6/src/phat.cpp:26: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 62 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 385 | std::__make_heap(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +[ 50%] Built target convert +make -f CMakeFiles/self_test.dir/build.make CMakeFiles/self_test.dir/depend +make[3]: Entering directory '/build/phat-1.6/build' +cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/self_test.dir/DependInfo.cmake --color= +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column_rep::_add_to(const Self&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +Dependee "/build/phat-1.6/build/CMakeFiles/self_test.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/self_test.dir/depend.internal". +Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/self_test.dir/depend.internal". +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_15bit_tree_columnEE5_syncEv._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'phat::index phat::boundary_matrix::get_num_rows(phat::index) const [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_11heap_columnEE5_syncEv._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::get_col_and_clear(phat::column&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -1451,48 +1481,17 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column::prune()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/info.cpp:19: -/build/phat-1.6/include/phat/boundary_matrix.h:108:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 108 | } - | ^ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_13sparse_columnEE5_syncEv._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::get_col_and_clear(phat::column&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -1548,34 +1547,48 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 385 | std::__make_heap(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 385 | std::__make_heap(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/src/benchmark.cpp:25: /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 55 | #pragma omp parallel for schedule( guided, 1 ) @@ -1602,6 +1615,38 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 385 | std::__make_heap(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -1610,11 +1655,18 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/phat.cpp:27: -/build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 52 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ -/build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +Scanning dependencies of target self_test +make[3]: Leaving directory '/build/phat-1.6/build' +make -f CMakeFiles/self_test.dir/build.make CMakeFiles/self_test.dir/build +make[3]: Entering directory '/build/phat-1.6/build' +[ 58%] Building CXX object CMakeFiles/self_test.dir/src/self_test.cpp.o +/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/self_test.dir/src/self_test.cpp.o -c /build/phat-1.6/src/self_test.cpp +[ 58%] Built target info +make -f CMakeFiles/simple_example.dir/build.make CMakeFiles/simple_example.dir/depend +make[3]: Entering directory '/build/phat-1.6/build' +cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/simple_example.dir/DependInfo.cmake --color= +Dependee "/build/phat-1.6/build/CMakeFiles/simple_example.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/simple_example.dir/depend.internal". +Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/simple_example.dir/depend.internal". In file included from /build/phat-1.6/src/benchmark.cpp:25: /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 62 | #pragma omp parallel for schedule( guided, 1 ) @@ -1624,6 +1676,23 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_15bit_tree_columnEE5_syncEv._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -1632,29 +1701,23 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, +In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 509 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /build/phat-1.6/src/info.cpp:19: -/build/phat-1.6/include/phat/boundary_matrix.h:295:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 295 | } - | ^ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_11heap_columnEE5_syncEv._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::init(phat::index)': -/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 960 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/src/benchmark.cpp:25: /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 62 | #pragma omp parallel for schedule( guided, 1 ) @@ -1664,6 +1727,15 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_13sparse_columnEE5_syncEv._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -1672,27 +1744,24 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column_rep::_add_to(const Self&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +Scanning dependencies of target simple_example +make[3]: Leaving directory '/build/phat-1.6/build' +make -f CMakeFiles/simple_example.dir/build.make CMakeFiles/simple_example.dir/build +make[3]: Entering directory '/build/phat-1.6/build' +[ 66%] Building CXX object CMakeFiles/simple_example.dir/src/simple_example.cpp.o +/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/simple_example.dir/src/simple_example.cpp.o -c /build/phat-1.6/src/simple_example.cpp +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::heap_column_rep::_add_to(const Self&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -1761,29 +1830,30 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, +In file included from /build/phat-1.6/src/phat.cpp:27: +/build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 52 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ +/build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/boundary_matrix.h:21, - from /build/phat-1.6/src/info.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 509 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat15boundary_matrixINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_11full_columnEEEE18load_vector_vectorIxaEEvRKS3_IS3_IT_SaISE_EESaISG_EERKS3_IT0_SaISL_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::init(phat::index)': +/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 960 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -1843,7 +1913,7 @@ /usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 385 | std::__make_heap(__first, __last, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat15boundary_matrixINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_11heap_columnEEEE18load_vector_vectorIxaEEvRKS3_IS3_IT_SaISE_EESaISG_EERKS3_IT0_SaISL_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -1859,37 +1929,33 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_heap.h: In function '_ZN4phat15boundary_matrixINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS3_EES2_IxSaIxEEEEE18load_vector_vectorIxaEEvRKS2_IS2_IT_SaISB_EESaISD_EERKS2_IT0_SaISI_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 385 | std::__make_heap(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/include/phat/compute_persistence_pairs.h:24, from /build/phat-1.6/src/benchmark.cpp:19: /build/phat-1.6/include/phat/algorithms/twist_reduction.h:49:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 49 | } | ^ /build/phat-1.6/include/phat/algorithms/twist_reduction.h:49:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::standard_reduction::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -1897,24 +1963,23 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::standard_reduction::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >]': + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat15boundary_matrixINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_11full_columnEEEE18load_vector_vectorIxaEEvRKS3_IS3_IT_SaISE_EESaISG_EERKS3_IT0_SaISL_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + from /build/phat-1.6/src/simple_example.cpp:22: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -1922,22 +1987,64 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::twist_reduction; Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat15boundary_matrixINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_11heap_columnEEEE18load_vector_vectorIxaEEvRKS3_IS3_IT_SaISE_EESaISG_EERKS3_IT0_SaISL_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/simple_example.cpp:22: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, + | ^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /build/phat-1.6/src/benchmark.cpp:26: /build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 52 | #pragma omp parallel for schedule( guided, 1 ) | ^~~ /build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_heap.h: In function '_ZN4phat15boundary_matrixINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS3_EES2_IxSaIxEEEEE18load_vector_vectorIxaEEvRKS2_IS2_IT_SaISB_EESaISD_EERKS2_IT0_SaISI_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 385 | std::__make_heap(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_11heap_columnEE5_syncEv._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -1945,20 +2052,35 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/simple_example.cpp:22: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_11heap_columnEE5_syncEv._omp_fn.0': + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -1966,10 +2088,14 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from /build/phat-1.6/src/simple_example.cpp:22: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1662 | __heap_select(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -1987,6 +2113,23 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1925 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1937 | std::__heap_select(__first, __middle, __last, __comp); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -1996,8 +2139,30 @@ /usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Linking CXX executable info -/usr/bin/cmake -E cmake_link_script CMakeFiles/info.dir/link.txt --verbose=1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/bits/stl_algobase.h:71, + from /usr/include/c++/10/bits/char_traits.h:39, + from /usr/include/c++/10/ios:40, + from /usr/include/c++/10/ostream:38, + from /usr/include/c++/10/iostream:39, + from /build/phat-1.6/include/phat/helpers/misc.h:22, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator*, std::vector > >; _Iterator2 = __gnu_cxx::__normal_iterator*, std::vector > >]': +/usr/include/c++/10/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 42 | operator()(_Iterator1 __it1, _Iterator2 __it2) const + | ^~~~~~~~ +/usr/include/c++/10/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2007,7 +2172,35 @@ /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/info.dir/src/info.cpp.o -o info +/usr/include/c++/10/bits/stl_algo.h: In function 'int main(int, char**)': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2017,24 +2210,45 @@ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/phat-1.6/build' -[ 50%] Built target info -make -f CMakeFiles/self_test.dir/build.make CMakeFiles/self_test.dir/depend -make[3]: Entering directory '/build/phat-1.6/build' -cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/self_test.dir/DependInfo.cmake --color= -Dependee "/build/phat-1.6/build/CMakeFiles/self_test.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/self_test.dir/depend.internal". -Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/self_test.dir/depend.internal". -Scanning dependencies of target self_test -make[3]: Leaving directory '/build/phat-1.6/build' -make -f CMakeFiles/self_test.dir/build.make CMakeFiles/self_test.dir/build -make[3]: Entering directory '/build/phat-1.6/build' -[ 58%] Building CXX object CMakeFiles/self_test.dir/src/self_test.cpp.o -/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/self_test.dir/src/self_test.cpp.o -c /build/phat-1.6/src/self_test.cpp +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, + | ^~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__reverse(_RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]': +/usr/include/c++/10/bits/stl_algo.h:1136:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1136 | __reverse(_RandomAccessIterator __first, _RandomAccessIterator __last, + | ^~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1136:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function '_OutputIterator std::__set_symmetric_difference(_InputIterator1, _InputIterator1, _InputIterator2, _InputIterator2, _OutputIterator, _Compare) [with _InputIterator1 = std::_List_iterator; _InputIterator2 = std::_List_iterator; _OutputIterator = std::back_insert_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5497 | __set_symmetric_difference(_InputIterator1 __first1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2042,7 +2256,11 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2050,15 +2268,24 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = std::_Rb_tree_const_iterator; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 300 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2076,6 +2303,71 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::heap_column::get_col_and_clear(phat::column&)': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::bit_tree_column::get_col_and_clear(phat::column&)': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::heap_column_rep::_prune()': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 385 | std::__make_heap(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2085,26 +2377,27 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/phat-1.6/src/self_test.cpp:26: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 55 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2114,10 +2407,15 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/phat.cpp:26: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:152:21: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 152 | #pragma omp parallel for schedule( guided, 1 ), private( stack, cur_col_values ) - | ^~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/phat-1.6/src/self_test.cpp:26: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 62 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, @@ -2128,6 +2426,32 @@ /usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 385 | std::__make_heap(__first, __last, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::list_column_rep::_add_to(phat::list_column_rep::Self&)': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/phat-1.6/src/phat.cpp:26: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:152:21: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 152 | #pragma omp parallel for schedule( guided, 1 ), private( stack, cur_col_values ) + | ^~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2153,16 +2477,36 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::list_column_rep::_add_to(phat::list_column_rep::Self&)': + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Uniform_representation, std::vector >]': /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, @@ -2176,29 +2520,43 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Uniform_representation, std::vector >]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 385 | std::__make_heap(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ @@ -2208,21 +2566,38 @@ 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2241,6 +2616,10 @@ 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +In file included from /build/phat-1.6/src/self_test.cpp:27: +/build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 52 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2262,8 +2641,8 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_15bit_tree_columnEE5_syncEv._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2271,7 +2650,7 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: + from /build/phat-1.6/src/self_test.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2280,49 +2659,32 @@ from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/vector.tcc: In member function 'void phat::full_column::get_col_and_clear(phat::column&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void phat::full_column::get_col_and_clear(phat::column&)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2330,11 +2692,19 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::row_reduction::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >]': + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_11heap_columnEE5_syncEv._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/include/phat/representations/default_representations.h:26, from /build/phat-1.6/include/phat/boundary_matrix.h:22, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:22, @@ -2351,6 +2721,26 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 509 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 75%] Linking CXX executable simple_example +/usr/bin/cmake -E cmake_link_script CMakeFiles/simple_example.dir/link.txt --verbose=1 +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::init(phat::index)': +/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 960 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from /build/phat-1.6/include/phat/helpers/misc.h:26, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2360,6 +2750,15 @@ /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::less, std::allocator >::const_iterator' changed in GCC 7.1 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2377,28 +2776,6 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2416,67 +2793,39 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::row_reduction::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algobase.h:71, - from /usr/include/c++/10/bits/char_traits.h:39, - from /usr/include/c++/10/ios:40, - from /usr/include/c++/10/ostream:38, - from /usr/include/c++/10/iostream:39, - from /build/phat-1.6/include/phat/helpers/misc.h:22, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator*, std::vector > >; _Iterator2 = __gnu_cxx::__normal_iterator*, std::vector > >]': -/usr/include/c++/10/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 42 | operator()(_Iterator1 __it1, _Iterator2 __it2) const - | ^~~~~~~~ -/usr/include/c++/10/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, - | ^~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2488,82 +2837,38 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__reverse(_RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]': -/usr/include/c++/10/bits/stl_algo.h:1136:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1136 | __reverse(_RandomAccessIterator __first, _RandomAccessIterator __last, - | ^~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1136:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat7dualizeINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS4_EES3_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.2': -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function '_OutputIterator std::__set_symmetric_difference(_InputIterator1, _InputIterator1, _InputIterator2, _InputIterator2, _OutputIterator, _Compare) [with _InputIterator1 = std::_List_iterator; _InputIterator2 = std::_List_iterator; _OutputIterator = std::back_insert_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5497 | __set_symmetric_difference(_InputIterator1 __first1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:5497:5: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = std::_Rb_tree_const_iterator; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 300 | vector<_Tp, _Alloc>:: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:300:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::_set_col(phat::index, const column&) [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::heap_column]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::full_column::get_col_and_clear(phat::column&)': + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2571,22 +2876,21 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/simple_example.dir/src/simple_example.cpp.o -o simple_example +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2594,132 +2898,184 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::heap_column::get_col_and_clear(phat::column&)': -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::bit_tree_column::get_col_and_clear(phat::column&)': + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +make[3]: Leaving directory '/build/phat-1.6/build' +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::heap_column_rep::_prune()': +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 385 | std::__make_heap(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::_set_col(phat::index, const column&) [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::heap_column]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS4_EES3_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/self_test.cpp:26: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 55 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/self_test.cpp:26: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 62 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +[ 75%] Built target simple_example /usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void phat::full_column::get_col_and_clear(phat::column&)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, +In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::full_column::get_col_and_clear(phat::column&)': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/phat-1.6/include/phat/representations/default_representations.h:26, + from /build/phat-1.6/include/phat/boundary_matrix.h:22, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:22, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 385 | std::__make_heap(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/phat-1.6/include/phat/representations/full_pivot_column.h:81:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 81 | } + | ^ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/ostream:38, @@ -2754,21 +3110,51 @@ /usr/include/c++/10/bits/stl_algo.h:87:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 87 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/set:60, - from /build/phat-1.6/include/phat/helpers/misc.h:26, +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = long long int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]': -/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::less, std::allocator >::const_iterator' changed in GCC 7.1 - 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2776,16 +3162,24 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/set:60, + from /build/phat-1.6/include/phat/helpers/misc.h:26, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = long long int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]': +/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::less, std::allocator >::const_iterator' changed in GCC 7.1 + 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2793,7 +3187,7 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: + from /build/phat-1.6/src/self_test.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2801,17 +3195,8 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2819,20 +3204,16 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/phat-1.6/src/self_test.cpp:27: -/build/phat-1.6/include/phat/algorithms/spectral_sequence_reduction.h:52:29: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 52 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_15bit_tree_columnEE5_syncEv._omp_fn.0': + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2840,7 +3221,7 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2856,23 +3237,15 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS3_EES2_IxSaIxEEEENS_11heap_columnEE5_syncEv._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, +In file included from /usr/include/c++/10/set:60, + from /build/phat-1.6/include/phat/helpers/misc.h:26, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = long long int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]': +/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::less, std::allocator >::const_iterator' changed in GCC 7.1 + 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -2890,15 +3263,15 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 509 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -2907,12 +3280,8 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::bit_tree_column::init(phat::index)': -/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 960 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2920,11 +3289,19 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -2933,6 +3310,15 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::release_pivot_col() [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::sparse_column]': +/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -2949,8 +3335,29 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/phat-1.6/src/benchmark.cpp:25: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:152:21: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 152 | #pragma omp parallel for schedule( guided, 1 ), private( stack, cur_col_values ) + | ^~~ +In file included from /build/phat-1.6/src/self_test.cpp:26: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:110:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 110 | } + | ^ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2958,7 +3365,7 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2971,7 +3378,7 @@ from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -2987,21 +3394,7 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::release_pivot_col() [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::sparse_column]': -/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -In file included from /build/phat-1.6/src/benchmark.cpp:25: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:152:21: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 152 | #pragma omp parallel for schedule( guided, 1 ), private( stack, cur_col_values ) - | ^~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -3009,8 +3402,8 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -3018,28 +3411,19 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: + from /build/phat-1.6/src/self_test.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -3063,16 +3447,12 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, +In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -3080,47 +3460,48 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15heap_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_22Uniform_representationISt6vectorINS_15list_column_repESaIS5_EES4_IxSaIxEEEEEEvRKNS_15boundary_matrixIT_EERKS9_RKS4_INS1_11column_typeESaISI_EESH_RS4_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1881 | __final_insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::release_pivot_col() [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::sparse_column]': +/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3131,26 +3512,6 @@ 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3177,40 +3538,28 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -3221,35 +3570,6 @@ /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:110:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 110 | } | ^ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void phat::full_column::get_col_and_clear(phat::column&)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/phat-1.6/include/phat/representations/default_representations.h:26, - from /build/phat-1.6/include/phat/boundary_matrix.h:22, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:22, - from /build/phat-1.6/src/self_test.cpp:19: -/build/phat-1.6/include/phat/representations/full_pivot_column.h:81:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 81 | } - | ^ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3259,23 +3579,14 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EE19_get_active_columnsINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRKNS_15boundary_matrixIT_EERKSA_RKS5_INS1_11column_typeESaISL_EESK_RS5_IcSaIcEE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/src/benchmark.cpp:25: /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:110:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 110 | } | ^ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -3312,26 +3623,10 @@ 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, | ^ /usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::standard_reduction; Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3383,21 +3678,7 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/set:60, - from /build/phat-1.6/include/phat/helpers/misc.h:26, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = long long int; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]': -/usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type 'std::_Rb_tree, std::less, std::allocator >::const_iterator' changed in GCC 7.1 - 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_22Uniform_representationISt6vectorINS_14set_column_repESaIS5_EES4_IxSaIxEEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -3415,11 +3696,6 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3494,6 +3770,23 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/char_traits.h:39, + from /usr/include/c++/10/ios:40, + from /usr/include/c++/10/ostream:38, + from /usr/include/c++/10/iostream:39, + from /build/phat-1.6/include/phat/helpers/misc.h:22, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, std::vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, std::vector > >]': +/usr/include/c++/10/bits/stl_algobase.h:152:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 152 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) + | ^~~~~~~~~ +/usr/include/c++/10/bits/stl_algobase.h:152:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3507,40 +3800,106 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, + | ^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:82:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 82 | if (__comp(__a, __b)) + | ~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:84:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 84 | if (__comp(__b, __c)) + | ~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:85:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 85 | std::iter_swap(__result, __b); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, +/usr/include/c++/10/bits/stl_algo.h:86:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 86 | else if (__comp(__a, __c)) + | ~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:87:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 87 | std::iter_swap(__result, __c); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:89:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 89 | std::iter_swap(__result, __a); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:91:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 91 | else if (__comp(__a, __c)) + | ~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:93:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 93 | else if (__comp(__b, __c)) + | ~~~~~~^~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::chunk_reduction_impl::operator()(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >; bool use_sqrt = false]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/phat-1.6/src/self_test.cpp:26: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:110:9: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 110 | } - | ^ + from /build/phat-1.6/src/self_test.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1662 | __heap_select(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1925 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1937 | std::__heap_select(__first, __middle, __last, __comp); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::persistence_pairs::operator==(phat::persistence_pairs&)': +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1977 | std::__final_insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1977 | std::__final_insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3555,10 +3914,18 @@ from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::_set_col(phat::index, const column&) [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::heap_column]': +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3583,19 +3950,11 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::_set_col(phat::index, const column&) [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::heap_column]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3616,23 +3975,25 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, +In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, +/usr/include/c++/10/bits/vector.tcc: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In constructor 'phat::boundary_matrix::boundary_matrix(const phat::boundary_matrix&) [with OtherRepresentation = phat::Pivot_representation, std::vector >, phat::full_column>; Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 385 | std::__make_heap(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3642,27 +4003,6 @@ /usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1881 | __final_insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1881:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -3675,25 +4015,24 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::release_pivot_col() [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::sparse_column]': -/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/src/benchmark.cpp:25: /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:85:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 85 | #pragma omp parallel for schedule( guided, 1 ), private( temp_col ) | ^~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -3709,23 +4048,6 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/phat-1.6/src/benchmark.cpp:25: /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:85:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 85 | #pragma omp parallel for schedule( guided, 1 ), private( temp_col ) @@ -3743,10 +4065,6 @@ /usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3764,10 +4082,6 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11full_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3789,14 +4103,6 @@ /usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': -/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_15bit_tree_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3806,119 +4112,14 @@ /usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/char_traits.h:39, - from /usr/include/c++/10/ios:40, - from /usr/include/c++/10/ostream:38, - from /usr/include/c++/10/iostream:39, - from /build/phat-1.6/include/phat/helpers/misc.h:22, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, std::vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, std::vector > >]': -/usr/include/c++/10/bits/stl_algobase.h:152:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 152 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) - | ^~~~~~~~~ -/usr/include/c++/10/bits/stl_algobase.h:152:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, - | ^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:82:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 82 | if (__comp(__a, __b)) - | ~~~~~~^~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:84:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 84 | if (__comp(__b, __c)) - | ~~~~~~^~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:85:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 85 | std::iter_swap(__result, __b); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:86:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 86 | else if (__comp(__a, __c)) - | ~~~~~~^~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:87:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 87 | std::iter_swap(__result, __c); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:89:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 89 | std::iter_swap(__result, __a); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:91:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 91 | else if (__comp(__a, __c)) - | ~~~~~~^~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:93:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 93 | else if (__comp(__b, __c)) - | ~~~~~~^~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1662 | __heap_select(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat27spectral_sequence_reductionclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS5_EES4_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1925 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1937 | std::__heap_select(__first, __middle, __last, __comp); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::persistence_pairs::operator==(phat::persistence_pairs&)': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1977 | std::__final_insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1977:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1977 | std::__final_insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': +/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_13sparse_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -3931,24 +4132,6 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/vector.tcc: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'bool phat::boundary_matrix::load_binary(const string&) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -3966,16 +4149,15 @@ /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/self_test.cpp:19: -/usr/include/c++/10/bits/stl_heap.h: In constructor 'phat::boundary_matrix::boundary_matrix(const phat::boundary_matrix&) [with OtherRepresentation = phat::Pivot_representation, std::vector >, phat::full_column>; Representation = phat::Uniform_representation, std::vector >]': -/usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 385 | std::__make_heap(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'bool phat::boundary_matrix::load_binary(const string&) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -4016,23 +4198,6 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>; Algorithm = phat::twist_reduction]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_vector.h: In member function 'void phat::Pivot_representation::release_pivot_col() [with BaseRepresentation = phat::Uniform_representation, std::vector >; PivotColumn = phat::heap_column]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -4065,6 +4230,23 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>; Algorithm = phat::twist_reduction]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -4095,12 +4277,22 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/phat-1.6/src/benchmark.cpp:25: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 62 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -4108,7 +4300,7 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -4116,50 +4308,36 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: + from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/phat-1.6/src/benchmark.cpp:25: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 62 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ +/usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.3': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ @@ -4170,7 +4348,7 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_algo.h:1171:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1171 | std::__reverse(__first, __last, std::__iterator_category(__first)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -4178,30 +4356,22 @@ from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb0EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.1': + from /build/phat-1.6/src/phat.cpp:19: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/phat-1.6/src/benchmark.cpp:25: -/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 62 | #pragma omp parallel for schedule( guided, 1 ) - | ^~~ -In file included from /usr/include/c++/10/vector:67, +In file included from /usr/include/c++/10/vector:72, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>; Algorithm = phat::twist_reduction]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 66%] Linking CXX executable self_test -/usr/bin/cmake -E cmake_link_script CMakeFiles/self_test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/self_test.dir/src/self_test.cpp.o -o self_test +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/phat-1.6/src/benchmark.cpp:25: +/build/phat-1.6/include/phat/algorithms/chunk_reduction.h:62:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 62 | #pragma omp parallel for schedule( guided, 1 ) + | ^~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -4225,23 +4395,19 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -make[3]: Leaving directory '/build/phat-1.6/build' -[ 66%] Built target self_test -make -f CMakeFiles/simple_example.dir/build.make CMakeFiles/simple_example.dir/depend -make[3]: Entering directory '/build/phat-1.6/build' -cd /build/phat-1.6/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/phat-1.6 /build/phat-1.6 /build/phat-1.6/build /build/phat-1.6/build /build/phat-1.6/build/CMakeFiles/simple_example.dir/DependInfo.cmake --color= +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>; Algorithm = phat::twist_reduction]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function '_ZN4phat20chunk_reduction_implILb1EEclINS_20Pivot_representationINS_22Uniform_representationISt6vectorINS_17vector_column_repESaIS6_EES5_IxSaIxEEEENS_11heap_columnEEEEEvRNS_15boundary_matrixIT_EE._omp_fn.0': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -Dependee "/build/phat-1.6/build/CMakeFiles/simple_example.dir/DependInfo.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/simple_example.dir/depend.internal". -Dependee "/build/phat-1.6/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/phat-1.6/build/CMakeFiles/simple_example.dir/depend.internal". -Scanning dependencies of target simple_example -make[3]: Leaving directory '/build/phat-1.6/build' -make -f CMakeFiles/simple_example.dir/build.make CMakeFiles/simple_example.dir/build -make[3]: Entering directory '/build/phat-1.6/build' -[ 75%] Building CXX object CMakeFiles/simple_example.dir/src/simple_example.cpp.o -/usr/bin/c++ -I/build/phat-1.6/include -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/simple_example.dir/src/simple_example.cpp.o -c /build/phat-1.6/src/simple_example.cpp In file included from /build/phat-1.6/src/benchmark.cpp:25: /build/phat-1.6/include/phat/algorithms/chunk_reduction.h:55:25: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 55 | #pragma omp parallel for schedule( guided, 1 ) @@ -4311,6 +4477,33 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 83%] Linking CXX executable self_test +/usr/bin/cmake -E cmake_link_script CMakeFiles/self_test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/self_test.dir/src/self_test.cpp.o -o self_test +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::sparse_column>]': +/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 + 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/phat-1.6/include/phat/helpers/misc.h:25, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -4329,6 +4522,12 @@ /usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 385 | std::__make_heap(__first, __last, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +make[3]: Leaving directory '/build/phat-1.6/build' +/usr/include/c++/10/bits/vector.tcc: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 83%] Built target self_test In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -4380,30 +4579,15 @@ /usr/include/c++/10/bits/stl_heap.h:385:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 385 | std::__make_heap(__first, __last, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Uniform_representation, std::vector >]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::sparse_column>]': -/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_vector.h:1628:17: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 - 1628 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -4413,10 +4597,14 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': +/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': +/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Uniform_representation, std::vector >; Algorithm = phat::twist_reduction]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -4424,12 +4612,7 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Uniform_representation, std::vector >]': +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': /usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -4442,23 +4625,6 @@ /usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/simple_example.cpp:22: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': -/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void phat::compute_persistence_pairs(phat::persistence_pairs&, phat::boundary_matrix&) [with ReductionAlgorithm = phat::twist_reduction; Representation = phat::Uniform_representation, std::vector >]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -4479,105 +4645,19 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': -/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/simple_example.cpp:22: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, - | ^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::full_column>]': +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::sparse_column>]': /usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/simple_example.cpp:22: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, +In file included from /usr/include/c++/10/vector:67, + from /build/phat-1.6/include/phat/helpers/misc.h:25, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/simple_example.cpp:22: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1662 | __heap_select(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1925 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1937 | std::__heap_select(__first, __middle, __last, __comp); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'int main(int, char**)': -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Linking CXX executable simple_example -/usr/bin/cmake -E cmake_link_script CMakeFiles/simple_example.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/phat-1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/simple_example.dir/src/simple_example.cpp.o -o simple_example -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Pivot_representation, std::vector >, phat::sparse_column>]': -/usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4861 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/phat-1.6/build' -[ 83%] Built target simple_example + from /build/phat-1.6/src/benchmark.cpp:19: +/usr/include/c++/10/bits/stl_vector.h: In function 'bool phat::boundary_matrix::load_binary(const string&) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, @@ -4607,30 +4687,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /build/phat-1.6/include/phat/helpers/misc.h:25, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/benchmark.cpp:19: -/usr/include/c++/10/bits/stl_vector.h: In function 'bool phat::boundary_matrix::load_binary(const string&) [with Representation = phat::Pivot_representation, std::vector >, phat::heap_column>]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/phat-1.6/include/phat/helpers/misc.h:29, - from /build/phat-1.6/include/phat/persistence_pairs.h:21, - from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, - from /build/phat-1.6/src/phat.cpp:19: -/usr/include/c++/10/bits/stl_algo.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Uniform_representation, std::vector >; Algorithm = phat::twist_reduction]': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Uniform_representation, std::vector >; Algorithm = phat::row_reduction]': -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 - 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, - | ^ -/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h: In function 'void phat::dualize(phat::boundary_matrix&) [with Representation = phat::Pivot_representation, std::vector >, phat::bit_tree_column>]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); @@ -4671,6 +4727,21 @@ from /build/phat-1.6/include/phat/helpers/misc.h:29, from /build/phat-1.6/include/phat/persistence_pairs.h:21, from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, + from /build/phat-1.6/src/phat.cpp:19: +/usr/include/c++/10/bits/stl_algo.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Uniform_representation, std::vector >; Algorithm = phat::twist_reduction]': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void compute_pairing(std::string, std::string, bool, bool, bool) [with Representation = phat::Uniform_representation, std::vector >; Algorithm = phat::row_reduction]': +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 + 5570 | return _GLIBCXX_STD_A::__set_symmetric_difference(__first1, __last1, + | ^ +/usr/include/c++/10/bits/stl_algo.h:5570:56: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/phat-1.6/include/phat/helpers/misc.h:29, + from /build/phat-1.6/include/phat/persistence_pairs.h:21, + from /build/phat-1.6/include/phat/compute_persistence_pairs.h:21, from /build/phat-1.6/src/benchmark.cpp:19: /usr/include/c++/10/bits/stl_algo.h: In member function 'bool phat::boundary_matrix::load_ascii(std::string) [with Representation = phat::Uniform_representation, std::vector >]': /usr/include/c++/10/bits/stl_algo.h:4861:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -4802,10 +4873,10 @@ dpkg-gencontrol: warning: Depends field of package python3-phat: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=cmake -O--builddirectory=build dh_builddeb -O--buildsystem=cmake -O--builddirectory=build +dpkg-deb: building package 'python3-phat' in '../python3-phat_1.6-2_armhf.deb'. +dpkg-deb: building package 'phat-utils' in '../phat-utils_1.6-2_armhf.deb'. dpkg-deb: building package 'phat-utils-dbgsym' in '../phat-utils-dbgsym_1.6-2_armhf.deb'. dpkg-deb: building package 'libphat-dev' in '../libphat-dev_1.6-2_all.deb'. -dpkg-deb: building package 'phat-utils' in '../phat-utils_1.6-2_armhf.deb'. -dpkg-deb: building package 'python3-phat' in '../python3-phat_1.6-2_armhf.deb'. dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -7261,8 +7332,8 @@ dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild -dpkg-shlibdeps: warning: debian/phat-utils/usr/bin/phat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-phat/usr/lib/python3/dist-packages/_phat.cpython-39-arm-linux-gnueabihf.so was not linked against libpthread.so.0 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: debian/phat-utils/usr/bin/phat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-phat: substitution variable ${python3:Provides} unused, but is defined @@ -7283,12 +7354,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10335/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10335/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21101 and its subdirectories -I: Current time: Wed Jul 21 02:35:14 -12 2021 -I: pbuilder-time-stamp: 1626878114 +I: removing directory /srv/workspace/pbuilder/10335 and its subdirectories +I: Current time: Thu Jul 22 04:53:06 +14 2021 +I: pbuilder-time-stamp: 1626879186