Diff of the two buildlogs: -- --- b1/build.log 2021-07-19 02:16:30.334547107 +0000 +++ b2/build.log 2021-07-19 02:25:54.089427255 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jul 18 14:12:25 -12 2021 -I: pbuilder-time-stamp: 1626660745 +I: Current time: Mon Jul 19 16:16:50 +14 2021 +I: pbuilder-time-stamp: 1626661010 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./ngs-sdk_2.10.9-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.wzT2F_22/trustedkeys.kbx': General error -gpgv: Signature made Sun Jan 17 06:13:46 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.7bOH6Lgo/trustedkeys.kbx': General error +gpgv: Signature made Mon Jan 18 08:13:46 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -33,135 +33,169 @@ dpkg-source: info: applying more_archs I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5573/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/7372/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4pro0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/7372/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/7372/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='a169725d2e024bb3bc25d299d3d1cfea' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5573' - PS1='# ' - PS2='> ' + INVOCATION_ID=d055851e1a20405f93a8093de3e85e0b + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=7372 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/pbuilderrc_uXtX --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/b1 --logfile b1/build.log ngs-sdk_2.10.9-1.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/pbuilderrc_PCRD --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/b2 --logfile b2/build.log --extrapackages usrmerge ngs-sdk_2.10.9-1.dsc' + SUDO_GID=115 + SUDO_UID=111 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt64a 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-armmp #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 16 21:27 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/5573/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 19 16:17 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 18 23:28 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/7372/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -400,7 +434,7 @@ Get: 185 http://deb.debian.org/debian bullseye/main armhf markdown all 1.0.1-10.1 [17.5 kB] Get: 186 http://deb.debian.org/debian bullseye/main armhf maven-repo-helper all 1.10 [142 kB] Get: 187 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B] -Fetched 288 MB in 28s (10.5 MB/s) +Fetched 288 MB in 30s (9577 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -1195,135 +1229,135 @@ Setting up javahelper (0.78) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:QuoVadis_Root_CA_3.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:emSign_Root_CA_-_G1.pem -Adding debian:USERTrust_RSA_Certification_Authority.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:GTS_Root_R4.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:Starfield_Class_2_CA.pem -Adding debian:TeliaSonera_Root_CA_v1.pem -Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:Entrust_Root_Certification_Authority.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:DigiCert_Assured_ID_Root_CA.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem +Adding debian:TrustCor_ECA-1.pem +Adding debian:Hongkong_Post_Root_CA_3.pem +Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:certSIGN_ROOT_CA.pem -Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:emSign_Root_CA_-_C1.pem -Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem -Adding debian:DST_Root_CA_X3.pem -Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:Amazon_Root_CA_3.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:SwissSign_Silver_CA_-_G2.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem -Adding debian:Certum_Trusted_Network_CA.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:GlobalSign_Root_CA.pem +Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:CFCA_EV_ROOT.pem +Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem +Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:Certigna_Root_CA.pem -Adding debian:DigiCert_Assured_ID_Root_G3.pem -Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:GTS_Root_R3.pem -Adding debian:Entrust_Root_Certification_Authority_-_G4.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem -Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:NAVER_Global_Root_Certification_Authority.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:XRamp_Global_CA_Root.pem +Adding debian:Trustwave_Global_Certification_Authority.pem +Adding debian:emSign_Root_CA_-_C1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:Cybertrust_Global_Root.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem -Adding debian:emSign_ECC_Root_CA_-_C3.pem -Adding debian:SecureTrust_CA.pem -Adding debian:TrustCor_RootCert_CA-2.pem -Adding debian:AffirmTrust_Commercial.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:EC-ACC.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:UCA_Global_G2_Root.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem -Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:Entrust_Root_Certification_Authority_-_G4.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:Sonera_Class_2_Root_CA.pem -Adding debian:DigiCert_Trusted_Root_G4.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem +Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:Izenpe.com.pem -Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:UCA_Extended_Validation_Root.pem +Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:GTS_Root_R4.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem +Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:certSIGN_Root_CA_G2.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:DST_Root_CA_X3.pem +Adding debian:Cybertrust_Global_Root.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:Amazon_Root_CA_2.pem +Adding debian:AffirmTrust_Commercial.pem +Adding debian:GTS_Root_R2.pem +Adding debian:SwissSign_Silver_CA_-_G2.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:GTS_Root_R1.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem +Adding debian:Actalis_Authentication_Root_CA.pem +Adding debian:Buypass_Class_3_Root_CA.pem +Adding debian:SZAFIR_ROOT_CA2.pem +Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:Certigna_Root_CA.pem +Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:Amazon_Root_CA_3.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:COMODO_Certification_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Secure_Global_CA.pem -Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem -Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:Entrust_Root_Certification_Authority_-_G2.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:ISRG_Root_X1.pem +Adding debian:Comodo_AAA_Services_root.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:emSign_Root_CA_-_G1.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem +Adding debian:emSign_ECC_Root_CA_-_C3.pem +Adding debian:ePKI_Root_Certification_Authority.pem +Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Certigna.pem -Adding debian:Trustwave_Global_Certification_Authority.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:UCA_Global_G2_Root.pem +Adding debian:Security_Communication_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem -Adding debian:Comodo_AAA_Services_root.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:DigiCert_Global_Root_G2.pem -Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:Atos_TrustedRoot_2011.pem +Adding debian:SecureTrust_CA.pem Adding debian:Go_Daddy_Class_2_CA.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:GTS_Root_R2.pem -Adding debian:TWCA_Global_Root_CA.pem -Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:Hongkong_Post_Root_CA_3.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:DigiCert_Global_Root_CA.pem -Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:SecureSign_RootCA11.pem -Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:Amazon_Root_CA_1.pem -Adding debian:Certum_Trusted_Network_CA_2.pem -Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:Microsec_e-Szigno_Root_CA_2009.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:QuoVadis_Root_CA.pem +Adding debian:CA_Disig_Root_R2.pem +Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:ACCVRAIZ1.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:QuoVadis_Root_CA_2.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:UCA_Extended_Validation_Root.pem +Adding debian:DigiCert_Assured_ID_Root_G3.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem +Adding debian:Izenpe.com.pem +Adding debian:Baltimore_CyberTrust_Root.pem +Adding debian:XRamp_Global_CA_Root.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:COMODO_RSA_Certification_Authority.pem done. Setting up default-jdk (2:1.11-72) ... Processing triggers for libc-bin (2.31-12) ... @@ -1342,8 +1376,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (450 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25850 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/ngs-sdk-2.10.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngs-sdk_2.10.9-1_source.changes +hostname: Name or service not known +I: Running cd /build/ngs-sdk-2.10.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngs-sdk_2.10.9-1_source.changes dpkg-buildpackage: info: source package ngs-sdk dpkg-buildpackage: info: source version 2.10.9-1 dpkg-buildpackage: info: source distribution unstable @@ -1384,24 +1455,24 @@ Configuring NGS-SDK package checking system type... Linux checking OS distributor... -checking machine architecture... aarch64 -configure: warning: possibly unsupported architecture aarch64 on 'Linux' -checking for supported architecture... aarch64 (32 +checking machine architecture... armv7l +configure: warning: possibly unsupported architecture armv7l on 'Linux' +checking for supported architecture... armv7l (32 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes -checking whether g++ accepts -static-libstdc++... no +checking whether g++ accepts -static-libstdc++... yes configure: creating 'ld.linux.exe_cmd.sh' -configure: creating 'Makefile.config.linux.aarch64' +configure: creating 'Makefile.config.linux.armv7l' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk -build output path: /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel +build output path: /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib @@ -1414,16 +1485,16 @@ Configuring NGS-JAVA package checking system type... Linux checking OS distributor... -checking machine architecture... aarch64 -configure: warning: possibly unsupported architecture aarch64 on 'Linux' -checking for supported architecture... aarch64 (32 +checking machine architecture... armv7l +configure: warning: possibly unsupported architecture armv7l on 'Linux' +checking for supported architecture... armv7l (32 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... jdk tool chain is supported checking for javac... yes checking for Python 3... /usr/bin/python3 -configure: creating 'Makefile.config.linux.aarch64' +configure: creating 'Makefile.config.linux.armv7l' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release @@ -1440,28 +1511,28 @@ Configuring NGS-PYTHON package checking system type... Linux checking OS distributor... -checking machine architecture... aarch64 -configure: warning: possibly unsupported architecture aarch64 on 'Linux' -checking for supported architecture... aarch64 (32 +checking machine architecture... armv7l +configure: warning: possibly unsupported architecture armv7l on 'Linux' +checking for supported architecture... armv7l (32 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes -checking whether g++ accepts -static-libstdc++... no +checking whether g++ accepts -static-libstdc++... yes checking for ngs-sdk package... configure: optional ngs-sdk package not found: skipped. checking for ncbi-vdb package... configure: optional ncbi-vdb package not found: skipped. configure: creating 'ld.linux.exe_cmd.sh' -configure: creating 'Makefile.config.linux.aarch64' +configure: creating 'Makefile.config.linux.armv7l' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-python/arm-linux-gnueabihf/ngs-python -build output path: /build/ngs-sdk-2.10.9/ngs-python/arm-linux-gnueabihf/ngs-python/linux/gcc/aarch64/rel +build output path: /build/ngs-sdk-2.10.9/ngs-python/arm-linux-gnueabihf/ngs-python/linux/gcc/armv7l/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib @@ -1479,151 +1550,151 @@ echo "DEBPKGNAME: EBPKGNAME" DEBPKGNAME: EBPKGNAME dh_auto_build --sourcedirectory=ngs-sdk - cd ngs-sdk && make -j3 + cd ngs-sdk && make -j4 make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language' make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++ -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrBlock.pic.o -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2 -ln -s libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2 -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a -ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++-static.a -ln -s libngs-adapt-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++-static.a -make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/java' -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/StringRef.pic.o -make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' -make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/VTable.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrBlock.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrorMsg.pic.o +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++ +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrBlock.pic.o +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a.2 +ln -s libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a.2 +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a +ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++-static.a +ln -s libngs-adapt-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++-static.a +make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o 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-o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o 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/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StringItf.pic.o -make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Package.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_String.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ErrorMsg.pic.o +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/StringRef.pic.o +make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-java.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Package.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_String.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ErrorMsg.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/java' +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StringItf.pic.o +make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' -rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++ -rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++ -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp -rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java -( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++/manifest ) -( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp/manifest ) -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java -( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java/manifest ) -rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python -( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python/manifest ) -( ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2.10.9 `cat /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp/manifest` ) -g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2.10.9 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib -lngs-disp -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2 -ln -s libngs-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2 -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a -ln -s libngs-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++-static.a -ln -s libngs-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++-static.a -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 -ln -s libngs-sdk.so.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 -rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so -ln -s libngs-sdk.so.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so +rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++ +rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++ +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp +rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java +( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++/manifest ) +( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp/manifest ) +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java +rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python +( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java/manifest ) +( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python/manifest ) +( ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a.2.10.9 `cat /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp/manifest` ) +g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2.10.9 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib -lngs-disp +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a.2 +ln -s libngs-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a.2 +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a +ln -s libngs-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++-static.a +ln -s libngs-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++-static.a +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2 +ln -s libngs-sdk.so.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2 +rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so +ln -s libngs-sdk.so.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk' # Remove ngs-bam generation, expects ngs-sdk and cannot find a way @@ -1631,7 +1702,7 @@ #cd ngs-bam && LD_LIBRARY_PATH=../ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib ./configure --build=arm-linux-gnueabihf --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk #dh_auto_build --sourcedirectory=ngs-bam dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7" - cd ngs-java && make -j3 "JAVAC=javac -source 1.7 -target 1.7" + cd ngs-java && make -j4 "JAVAC=javac -source 1.7 -target 1.7" make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' mkdir -p /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar @@ -1667,15 +1738,15 @@ make -C ngs-sdk/test make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -DNDEBUG -O3 --shared -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libtest_engine.so /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine/test_engine.pic.o -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/test_engine +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -DNDEBUG -O3 --shared -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libtest_engine.so /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/test_engine/test_engine.pic.o -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/bin -mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test -g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD -g++ -DNDEBUG -O3 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/bin/test-ngs /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test/main.o -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/bin +mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/ngs-test +g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD +g++ -DNDEBUG -O3 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/bin/test-ngs /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/ngs-test/main.o -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test' # Tests of Java binding disabled because need external lib ncbi-vdb, @@ -1700,9 +1771,9 @@ set -e install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf -mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf -mv /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf -mv /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2.10.9 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf +mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf +mv /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf +mv /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2.10.9 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf PKGDEV=libngs-sdk-dev PKGSHL=libngs-sdk2 install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf @@ -1728,30 +1799,30 @@ creating build creating build/lib creating build/lib/ngs -copying ngs/String.py -> build/lib/ngs +copying ngs/Alignment.py -> build/lib/ngs +copying ngs/ReferenceSequence.py -> build/lib/ngs +copying ngs/Fragment.py -> build/lib/ngs copying ngs/ReadGroupIterator.py -> build/lib/ngs -copying ngs/Pileup.py -> build/lib/ngs copying ngs/FragmentIterator.py -> build/lib/ngs -copying ngs/Package.py -> build/lib/ngs -copying ngs/LibManager.py -> build/lib/ngs -copying ngs/ReferenceSequence.py -> build/lib/ngs copying ngs/ReadGroup.py -> build/lib/ngs -copying ngs/AlignmentIterator.py -> build/lib/ngs -copying ngs/Reference.py -> build/lib/ngs -copying ngs/__init__.py -> build/lib/ngs -copying ngs/LibChecker.py -> build/lib/ngs -copying ngs/Alignment.py -> build/lib/ngs copying ngs/ReadIterator.py -> build/lib/ngs -copying ngs/ReadCollection.py -> build/lib/ngs +copying ngs/Pileup.py -> build/lib/ngs copying ngs/Read.py -> build/lib/ngs -copying ngs/ReferenceIterator.py -> build/lib/ngs -copying ngs/Fragment.py -> build/lib/ngs -copying ngs/ErrorMsg.py -> build/lib/ngs copying ngs/Refcount.py -> build/lib/ngs -copying ngs/PileupIterator.py -> build/lib/ngs -copying ngs/Statistics.py -> build/lib/ngs +copying ngs/LibManager.py -> build/lib/ngs +copying ngs/String.py -> build/lib/ngs +copying ngs/Package.py -> build/lib/ngs copying ngs/PileupEvent.py -> build/lib/ngs +copying ngs/ReadCollection.py -> build/lib/ngs +copying ngs/__init__.py -> build/lib/ngs +copying ngs/ErrorMsg.py -> build/lib/ngs copying ngs/PileupEventIterator.py -> build/lib/ngs +copying ngs/Statistics.py -> build/lib/ngs +copying ngs/LibChecker.py -> build/lib/ngs +copying ngs/ReferenceIterator.py -> build/lib/ngs +copying ngs/AlignmentIterator.py -> build/lib/ngs +copying ngs/Reference.py -> build/lib/ngs +copying ngs/PileupIterator.py -> build/lib/ngs running install_lib creating ../debian/python3-ngs creating ../debian/python3-ngs/usr @@ -1759,54 +1830,54 @@ creating ../debian/python3-ngs/usr/lib/python3 creating ../debian/python3-ngs/usr/lib/python3/dist-packages creating ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/FragmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Package.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReadCollection.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Read.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Refcount.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/PileupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Package.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEvent.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReadCollection.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEventIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-39.pyc +copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/PileupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Package.py to Package.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Read.py to Read.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Refcount.py to Refcount.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-39.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Package.py to Package.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-39.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-39.pyc running install_egg_info Writing ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs-1.0.egg-info find debian -name "*.pyc" -delete @@ -1850,12 +1921,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/7372/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/7372/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5573 and its subdirectories -I: Current time: Sun Jul 18 14:16:23 -12 2021 -I: pbuilder-time-stamp: 1626660983 +I: removing directory /srv/workspace/pbuilder/7372 and its subdirectories +I: Current time: Mon Jul 19 16:25:49 +14 2021 +I: pbuilder-time-stamp: 1626661549