Diff of the two buildlogs: -- --- b1/build.log 2021-07-29 21:10:03.309266139 +0000 +++ b2/build.log 2021-07-29 21:29:36.872952328 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 29 09:06:35 -12 2021 -I: pbuilder-time-stamp: 1627592795 +I: Current time: Fri Jul 30 11:10:22 +14 2021 +I: pbuilder-time-stamp: 1627593022 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./libchado-perl_1.31-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.RExqvt8j/trustedkeys.kbx': General error -gpgv: Signature made Wed Dec 4 20:43:50 2019 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.D141bSeH/trustedkeys.kbx': General error +gpgv: Signature made Thu Dec 5 22:43:50 2019 +14 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key @@ -36,135 +36,169 @@ dpkg-source: info: applying 0001-Sort-installed-configuration-file-for-reproducibilit.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/27395/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19625/tmp/hooks/D01_modify_environment starting +debug: Running on wbq0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19625/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19625/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f9692ff30d4b41848f71086293328060' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='27395' - PS1='# ' - PS2='> ' + INVOCATION_ID=18fb794e4c65439dbde7bf050cf1dd29 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=19625 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CFRwEusaG2/pbuilderrc_O01R --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CFRwEusaG2/b1 --logfile b1/build.log libchado-perl_1.31-6.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CFRwEusaG2/pbuilderrc_7npJ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CFRwEusaG2/b2 --logfile b2/build.log --extrapackages usrmerge libchado-perl_1.31-6.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt64c 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp #1 SMP Debian 5.10.46-2 (2021-07-20) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 25 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/27395/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 30 11:12 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 25 23:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/19625/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -435,7 +469,7 @@ Get: 191 http://deb.debian.org/debian bullseye/main armhf libxslt1.1 armhf 1.1.34-4 [220 kB] Get: 192 http://deb.debian.org/debian bullseye/main armhf libxml-libxslt-perl armhf 1.99-1+b1 [44.7 kB] Get: 193 http://deb.debian.org/debian bullseye/main armhf libxml-simple-perl all 2.25-1 [72.0 kB] -Fetched 43.7 MB in 7s (5982 kB/s) +Fetched 43.7 MB in 12s (3682 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -1248,9 +1282,42 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (226 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26911 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libchado-perl_1.31-6_source.changes +hostname: Name or service not known +I: Running cd /build/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libchado-perl_1.31-6_source.changes dpkg-buildpackage: info: source package libchado-perl dpkg-buildpackage: info: source version 1.31-6 dpkg-buildpackage: info: source distribution unstable @@ -1322,35 +1389,35 @@ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- make[1]: Leaving directory '/build/libchado-perl-1.31' dh_auto_build -O--buildsystem=perl_makemaker - make -j3 + make -j4 make[1]: Entering directory '/build/libchado-perl-1.31' -Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/BulkWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Config2.pm (unchanged) Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged) -Skip blib/lib/Bio/Chado/Builder.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) -Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Config.pm (unchanged) -Skip blib/lib/Bio/FeatureIO/chadobulk.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/TableWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/BulkWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) +Skip blib/lib/Bio/Chado/Config.pm (unchanged) +Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/AcodeWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) Skip blib/lib/Bio/GMOD/Load.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter/FeatureIterator.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged) -Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged) -Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) -Skip blib/lib/Bio/Chado/Config.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/AcodeWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) +Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BlastWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) +Skip blib/lib/Bio/FeatureIO/chadobulk.pm (unchanged) +Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) +Skip blib/lib/Bio/Chado/Builder.pm (unchanged) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" load/bin/bulk_load_gff3.PLS load/bin/gmod_bulk_load_gff3.pl "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/conf_install.PLS install_util/conf_install.pl Extracting conf_install.pl (with variable substitutions) @@ -1377,8 +1444,8 @@ cp bin/gmod_make_cvtermpath.pl blib/script/gmod_make_cvtermpath.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_cvtermpath.pl cp bin/gmod_make_gff_from_dbxref.pl blib/script/gmod_make_gff_from_dbxref.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl cp bin/gmod_materialized_view_tool.pl blib/script/gmod_materialized_view_tool.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_materialized_view_tool.pl cp bin/gmod_sort_gff3.pl blib/script/gmod_sort_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_sort_gff3.pl @@ -1397,7 +1464,7 @@ dh_prep -O--buildsystem=perl_makemaker dh_installdirs -O--buildsystem=perl_makemaker dh_auto_install -O--buildsystem=perl_makemaker - make -j3 install DESTDIR=/build/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j4 install DESTDIR=/build/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libchado-perl-1.31' "/usr/bin/perl" "/build/libchado-perl-1.31/install_util/conf_install.pl" 'GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' 'VERSION=1.31' "/usr/bin/perl" "/build/libchado-perl-1.31/install_util/src_install.pl" 'GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' @@ -1406,116 +1473,116 @@ Appending installation info to /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/perllocal.pod Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chado.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chadobulk.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Builder.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/SeqUtils.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config2.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Config.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Tools/ETA.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/FeatureIterator.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load/GFF.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BulkWriter.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/TableWriter.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Config.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/FeatureIterator.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Tools/ETA.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_extract_dbxref_from_gff.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_materialized_view_tool.pl.1p -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_gff3.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chadobulk.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Builder.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MySplitLocation.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config2.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chadobulk.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Tools::ETA.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config2.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load::GFF.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/addcascades -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi_viaTT.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi_viaTT.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff3_preprocessor.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_add_organism.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_pubmed.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/addcascades Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/config.PLS -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/interactions2SIF.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_pubmed.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create-so-bridge.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl -Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL +Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl make[1]: Leaving directory '/build/libchado-perl-1.31' debian/rules override_dh_install make[1]: Entering directory '/build/libchado-perl-1.31' @@ -1596,12 +1663,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/19625/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19625/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/27395 and its subdirectories -I: Current time: Thu Jul 29 09:09:59 -12 2021 -I: pbuilder-time-stamp: 1627592999 +I: removing directory /srv/workspace/pbuilder/19625 and its subdirectories +I: Current time: Fri Jul 30 11:29:32 +14 2021 +I: pbuilder-time-stamp: 1627594172