Diff of the two buildlogs: -- --- b1/build.log 2021-08-20 20:23:02.551401335 +0000 +++ b2/build.log 2021-08-20 20:26:50.862866699 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Aug 20 08:14:02 -12 2021 -I: pbuilder-time-stamp: 1629490442 +I: Current time: Sat Aug 21 10:23:22 +14 2021 +I: pbuilder-time-stamp: 1629491002 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./golang-github-biogo-biogo_1.0.3-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.QQE1ncgr/trustedkeys.kbx': General error -gpgv: Signature made Sat Dec 5 01:01:30 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.TugeeFOw/trustedkeys.kbx': General error +gpgv: Signature made Sun Dec 6 03:01:30 2020 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -27,135 +27,169 @@ dpkg-source: info: unpacking golang-github-biogo-biogo_1.0.3-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/28249/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4185/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4185/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4185/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='7e978f61eabc4d23bcd47d69ba31a61d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='28249' - PS1='# ' - PS2='> ' + INVOCATION_ID=b47d859a3385469ab755d2e053993321 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4185 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.aUpGDE15Sy/pbuilderrc_8y3I --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.aUpGDE15Sy/b1 --logfile b1/build.log golang-github-biogo-biogo_1.0.3-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.aUpGDE15Sy/pbuilderrc_32jW --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.aUpGDE15Sy/b2 --logfile b2/build.log golang-github-biogo-biogo_1.0.3-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux wbq0 5.10.0-8-armmp #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more - -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 14 21:27 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/28249/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more + -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 21 10:23 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 15 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/4185/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -248,7 +282,7 @@ Get: 43 http://deb.debian.org/debian bullseye/main armhf golang-github-biogo-store-dev all 0.0~git20200525.8c94ae1-2 [34.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf golang-github-biogo-hts-dev all 1.1.0+dfsg1-2 [292 kB] -Fetched 75.5 MB in 8s (10.0 MB/s) +Fetched 75.5 MB in 7s (11.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -444,7 +478,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/golang-github-biogo-biogo-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-biogo_1.0.3-1_source.changes +hostname: Name or service not known +I: Running cd /build/golang-github-biogo-biogo-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-biogo-biogo_1.0.3-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-biogo dpkg-buildpackage: info: source version 1.0.3-1 dpkg-buildpackage: info: source distribution unstable @@ -462,23 +497,23 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 3 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util -internal/cpu + cd _build && go install -trimpath -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util github.com/biogo/biogo -internal/unsafeheader runtime/internal/sys +internal/unsafeheader +internal/cpu math/bits -internal/bytealg -runtime/internal/atomic -runtime/internal/math -math unicode/utf8 +runtime/internal/math internal/race sync/atomic -runtime +runtime/internal/atomic +math +internal/bytealg unicode internal/testlog encoding +runtime github.com/biogo/store/llrb image/color internal/reflectlite @@ -487,61 +522,61 @@ errors sort io -strconv internal/oserror +strconv syscall +container/heap strings -reflect -github.com/biogo/biogo/feat text/tabwriter hash -container/heap bytes -internal/syscall/unix -time -internal/syscall/execenv -bufio +reflect +github.com/biogo/biogo/feat github.com/biogo/biogo/io/featio +bufio github.com/biogo/store/interval hash/adler32 github.com/biogo/biogo/feat/gene +internal/syscall/unix +time +internal/syscall/execenv internal/poll internal/fmtsort encoding/binary os -path/filepath fmt +path/filepath io/ioutil -github.com/biogo/biogo/alphabet github.com/biogo/biogo/util -encoding/gob encoding/csv +github.com/biogo/biogo/alphabet +encoding/gob github.com/biogo/graph +log +compress/flate github.com/biogo/biogo/seq -github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix +github.com/biogo/biogo/align github.com/biogo/biogo/seq/linear github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/morass github.com/biogo/biogo/io/seqio -log +compress/zlib github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/align/pals/filter +github.com/biogo/biogo/complexity github.com/biogo/biogo/io/featio/gff -compress/flate github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/concurrent -github.com/biogo/biogo/align/pals github.com/biogo/biogo/errors -compress/zlib github.com/biogo/biogo/feat/genome -github.com/biogo/biogo/complexity +github.com/biogo/biogo/io/featio/bed +github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/feat/genome/cow/bt7 -github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/drosophila/dm3 +github.com/biogo/biogo/align/pals +github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 -github.com/biogo/biogo/io/featio/bed -github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/seq/multi github.com/biogo/hts/fai github.com/biogo/biogo/io/seqio/fai @@ -551,7 +586,7 @@ github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/quality dh_auto_test -O--builddirectory=_build -O--buildsystem=golang - cd _build && go test -vet=off -v -p 3 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util + cd _build && go test -vet=off -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util ? github.com/biogo/biogo [no test files] === RUN Test OK: 2 passed @@ -571,63 +606,63 @@ === RUN ExampleSWAffine_Align --- PASS: ExampleSWAffine_Align (0.00s) PASS -ok github.com/biogo/biogo/align 0.029s +ok github.com/biogo/biogo/align 0.041s ? github.com/biogo/biogo/align/matrix [no test files] === RUN Test OK: 5 passed ---- PASS: Test (0.05s) +--- PASS: Test (0.07s) PASS -ok github.com/biogo/biogo/align/pals 0.091s +ok github.com/biogo/biogo/align/pals 0.120s === RUN Test OK: 1 passed ---- PASS: Test (0.03s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/biogo/align/pals/dp 0.055s +ok github.com/biogo/biogo/align/pals/dp 0.039s === RUN Test OK: 1 passed ---- PASS: Test (0.06s) +--- PASS: Test (0.05s) PASS -ok github.com/biogo/biogo/align/pals/filter 0.095s +ok github.com/biogo/biogo/align/pals/filter 0.074s === RUN Test OK: 10 passed ---- PASS: Test (0.03s) +--- PASS: Test (0.01s) === RUN Example_allValid --- PASS: Example_allValid (0.00s) === RUN Example_complement --- PASS: Example_complement (0.00s) PASS -ok github.com/biogo/biogo/alphabet 0.058s +ok github.com/biogo/biogo/alphabet 0.037s === RUN Test OK: 4 passed ---- PASS: Test (4.14s) +--- PASS: Test (3.05s) PASS -ok github.com/biogo/biogo/complexity 4.193s +ok github.com/biogo/biogo/complexity 3.113s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) === RUN ExampleMap --- PASS: ExampleMap (0.00s) === RUN ExamplePromiseMap ---- PASS: ExamplePromiseMap (1.00s) +--- PASS: ExamplePromiseMap (1.04s) === RUN ExampleLazily --- PASS: ExampleLazily (0.00s) PASS -ok github.com/biogo/biogo/concurrent 1.034s +ok github.com/biogo/biogo/concurrent 1.087s === RUN Test OK: 4 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.03s) PASS -ok github.com/biogo/biogo/errors 0.027s +ok github.com/biogo/biogo/errors 0.077s === RUN Test OK: 6 passed ---- PASS: Test (0.03s) +--- PASS: Test (0.05s) PASS -ok github.com/biogo/biogo/feat 0.068s +ok github.com/biogo/biogo/feat 0.081s === RUN Test OK: 4 passed ---- PASS: Test (0.02s) +--- PASS: Test (0.04s) PASS -ok github.com/biogo/biogo/feat/gene 0.042s +ok github.com/biogo/biogo/feat/gene 0.067s ? github.com/biogo/biogo/feat/genome [no test files] ? github.com/biogo/biogo/feat/genome/cow/bt7 [no test files] ? github.com/biogo/biogo/feat/genome/drosophila/dm3 [no test files] @@ -635,63 +670,63 @@ ? github.com/biogo/biogo/feat/genome/mouse/mm10 [no test files] === RUN Test OK: 5 passed ---- PASS: Test (43.68s) +--- PASS: Test (14.47s) PASS -ok github.com/biogo/biogo/index/kmerindex 45.071s +ok github.com/biogo/biogo/index/kmerindex 15.077s === RUN Test OK: 2 passed --- PASS: Test (0.02s) PASS -ok github.com/biogo/biogo/io/featio 0.046s +ok github.com/biogo/biogo/io/featio 0.068s === RUN Test OK: 4 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.05s) PASS -ok github.com/biogo/biogo/io/featio/bed 0.036s +ok github.com/biogo/biogo/io/featio/bed 0.086s === RUN Test OK: 5 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.04s) PASS -ok github.com/biogo/biogo/io/featio/gff 0.048s +ok github.com/biogo/biogo/io/featio/gff 0.077s === RUN TestSeqio --- PASS: TestSeqio (0.00s) === RUN Test OK: 3 passed ---- PASS: Test (0.02s) +--- PASS: Test (0.03s) PASS -ok github.com/biogo/biogo/io/seqio 0.049s +ok github.com/biogo/biogo/io/seqio 0.085s === RUN Test OK: 2 passed ---- PASS: Test (0.03s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/biogo/io/seqio/alignio 0.086s +ok github.com/biogo/biogo/io/seqio/alignio 0.058s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/biogo/io/seqio/fai 0.032s +ok github.com/biogo/biogo/io/seqio/fai 0.115s === RUN Test OK: 2 passed ---- PASS: Test (0.02s) +--- PASS: Test (0.03s) === RUN ExampleReader --- PASS: ExampleReader (0.00s) PASS -ok github.com/biogo/biogo/io/seqio/fasta 0.047s +ok github.com/biogo/biogo/io/seqio/fasta 0.115s === RUN Test OK: 2 passed --- PASS: Test (0.01s) PASS -ok github.com/biogo/biogo/io/seqio/fastq 0.049s +ok github.com/biogo/biogo/io/seqio/fastq 0.023s === RUN Test OK: 7 passed ---- PASS: Test (16.15s) +--- PASS: Test (15.79s) PASS -ok github.com/biogo/biogo/morass 16.194s +ok github.com/biogo/biogo/morass 15.864s ? github.com/biogo/biogo/pwm [no test files] === RUN TestSeq --- PASS: TestSeq (0.00s) PASS -ok github.com/biogo/biogo/seq 0.021s +ok github.com/biogo/biogo/seq 0.027s === RUN Test OK: 1 passed --- PASS: Test (0.00s) @@ -732,10 +767,10 @@ === RUN ExampleQSeq_truncate --- PASS: ExampleQSeq_truncate (0.00s) PASS -ok github.com/biogo/biogo/seq/alignment 0.045s +ok github.com/biogo/biogo/seq/alignment 0.033s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) === RUN ExampleNewQSeq --- PASS: ExampleNewQSeq (0.00s) === RUN ExampleQSeq_Validate @@ -759,10 +794,10 @@ === RUN ExampleSeq_compose --- PASS: ExampleSeq_compose (0.00s) PASS -ok github.com/biogo/biogo/seq/linear 0.041s +ok github.com/biogo/biogo/seq/linear 0.056s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) === RUN ExampleNewMulti --- PASS: ExampleNewMulti (0.00s) === RUN ExampleMulti_Add @@ -792,15 +827,15 @@ === RUN ExampleSet_Len --- PASS: ExampleSet_Len (0.00s) PASS -ok github.com/biogo/biogo/seq/multi 0.048s +ok github.com/biogo/biogo/seq/multi 0.068s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/biogo/seq/quality 0.025s +ok github.com/biogo/biogo/seq/quality 0.022s === RUN Test OK: 4 passed ---- PASS: Test (0.07s) +--- PASS: Test (0.00s) === RUN ExampleTruncate_a --- PASS: ExampleTruncate_a (0.00s) === RUN ExampleTruncate_b @@ -810,12 +845,12 @@ === RUN ExampleStitch --- PASS: ExampleStitch (0.00s) PASS -ok github.com/biogo/biogo/seq/sequtils 0.171s +ok github.com/biogo/biogo/seq/sequtils 0.030s === RUN Test OK: 11 passed --- PASS: Test (0.10s) PASS -ok github.com/biogo/biogo/util 0.129s +ok github.com/biogo/biogo/util 0.131s create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang @@ -842,12 +877,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4185/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4185/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/28249 and its subdirectories -I: Current time: Fri Aug 20 08:22:58 -12 2021 -I: pbuilder-time-stamp: 1629490978 +I: removing directory /srv/workspace/pbuilder/4185 and its subdirectories +I: Current time: Sat Aug 21 10:26:46 +14 2021 +I: pbuilder-time-stamp: 1629491207