Diff of the two buildlogs: -- --- b1/build.log 2021-07-25 11:08:43.841808195 +0000 +++ b2/build.log 2021-07-25 11:22:26.538570727 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jul 24 23:05:04 -12 2021 -I: pbuilder-time-stamp: 1627211104 +I: Current time: Mon Jul 26 01:08:58 +14 2021 +I: pbuilder-time-stamp: 1627211338 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./cyvcf2_0.30.4-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.YdzyV783/trustedkeys.kbx': General error -gpgv: Signature made Wed Feb 3 00:33:21 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.6zlF_6ev/trustedkeys.kbx': General error +gpgv: Signature made Thu Feb 4 02:33:21 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -31,135 +31,169 @@ dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13594/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/16879/tmp/hooks/D01_modify_environment starting +debug: Running on virt32a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/16879/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/16879/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='92edccf98b2d44338501267ed5c901c2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13594' - PS1='# ' - PS2='> ' + INVOCATION_ID=efe26761607b4af0ba37ad5e58f942c1 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=16879 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.11TkI1wFmC/pbuilderrc_PS8t --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.11TkI1wFmC/b1 --logfile b1/build.log cyvcf2_0.30.4-4.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.11TkI1wFmC/pbuilderrc_BBYr --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.11TkI1wFmC/b2 --logfile b2/build.log --extrapackages usrmerge cyvcf2_0.30.4-4.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1c 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-2 (2021-07-20) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 23 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/13594/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 26 01:10 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 22 23:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/16879/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -314,7 +348,7 @@ Get: 88 http://deb.debian.org/debian bullseye/main armhf python3-nose all 1.3.7-7 [133 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] -Fetched 44.1 MB in 4s (10.2 MB/s) +Fetched 44.1 MB in 9s (5065 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -693,8 +727,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (428 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24141 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/cyvcf2-0.30.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.30.4-4_source.changes +hostname: Name or service not known +I: Running cd /build/cyvcf2-0.30.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cyvcf2_0.30.4-4_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.30.4-4 dpkg-buildpackage: info: source distribution unstable @@ -712,11 +783,11 @@ 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean -make[1]: Entering directory '/build/cyvcf2-0.30.4' +make[1]: ingresso nella directory «/build/cyvcf2-0.30.4» dh_clean rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete -make[1]: Leaving directory '/build/cyvcf2-0.30.4' +make[1]: uscita dalla directory «/build/cyvcf2-0.30.4» debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild @@ -732,14 +803,14 @@ running build_py creating /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 -copying cyvcf2/__main__.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 +copying cyvcf2/__main__.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2 creating /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests -copying cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_reader.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_cli.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_hemi.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/__init__.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests +copying cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO @@ -815,7 +886,7 @@ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/cyvcf2-0.30.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -Ihtslib -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c cyvcf2/helpers.c -o build/temp.linux-armhf-3.9/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/cyvcf2-0.30.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/cyvcf2/cyvcf2.o build/temp.linux-armhf-3.9/cyvcf2/helpers.o -lz -lbz2 -llzma -lcurl -lssl -lhts -lcrypt -o /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.cpython-39-arm-linux-gnueabihf.so debian/rules override_dh_auto_test -make[1]: Entering directory '/build/cyvcf2-0.30.4' +make[1]: ingresso nella directory «/build/cyvcf2-0.30.4» dh_auto_test I: pybuild base:232: cd /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build; python3.9 -m nose -v cyvcf2.tests.test_cli.test_version ... ok @@ -934,12 +1005,12 @@ cyvcf2.tests.test_writer.TestFileModeInference.test_explicitMode_doesNotInferFromFname ... ok ---------------------------------------------------------------------- -Ran 92 tests in 2.352s +Ran 92 tests in 11.696s OK # clean up after testing find . -name out.vcf -delete -make[1]: Leaving directory '/build/cyvcf2-0.30.4' +make[1]: uscita dalla directory «/build/cyvcf2-0.30.4» create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -969,87 +1040,87 @@ creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9 creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cli.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__main__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/helpers.c -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 +creating /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-39.pyc -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__pycache__ copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/helpers.h -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__init__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/relatedness.h -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cli.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.cpython-39-arm-linux-gnueabihf.so -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 -byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/cli.py to cli.cpython-39.pyc -byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__main__.py to __main__.cpython-39.pyc -byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-39.pyc +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/helpers.c -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/relatedness.h -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__init__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 +copying /build/cyvcf2-0.30.4/.pybuild/cpython3_3.9_cyvcf2/build/cyvcf2/__main__.py -> /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2 byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-39.pyc +byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/cli.py to cli.cpython-39.pyc byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2/__main__.py to __main__.cpython-39.pyc running install_egg_info Copying cyvcf2.egg-info to /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/cyvcf2-0.30.4.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/bin debian/rules override_dh_install -make[1]: Entering directory '/build/cyvcf2-0.30.4' +make[1]: ingresso nella directory «/build/cyvcf2-0.30.4» dh_numpy3 dh_install -make[1]: Leaving directory '/build/cyvcf2-0.30.4' +make[1]: uscita dalla directory «/build/cyvcf2-0.30.4» dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman -make[1]: Entering directory '/build/cyvcf2-0.30.4' +make[1]: ingresso nella directory «/build/cyvcf2-0.30.4» PATH=$PATH:/build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/cyvcf2-0.30.4/debian/python3-cyvcf2/usr/lib/python3.9/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.30.4 cyvcf2 > debian/cyvcf2.1 dh_installman -make[1]: Leaving directory '/build/cyvcf2-0.30.4' +make[1]: uscita dalla directory «/build/cyvcf2-0.30.4» dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild @@ -1070,8 +1141,8 @@ dpkg-gencontrol: warning: package python3-cyvcf2: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.30.4-4_armhf.deb'. -dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.30.4-4_armhf.deb'. +dpkg-deb: generazione del pacchetto "python3-cyvcf2-dbgsym" in "../python3-cyvcf2-dbgsym_0.30.4-4_armhf.deb". +dpkg-deb: generazione del pacchetto "python3-cyvcf2" in "../python3-cyvcf2_0.30.4-4_armhf.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cyvcf2_0.30.4-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1080,12 +1151,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/16879/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/16879/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13594 and its subdirectories -I: Current time: Sat Jul 24 23:08:40 -12 2021 -I: pbuilder-time-stamp: 1627211320 +I: removing directory /srv/workspace/pbuilder/16879 and its subdirectories +I: Current time: Mon Jul 26 01:22:22 +14 2021 +I: pbuilder-time-stamp: 1627212142