Diff of the two buildlogs: -- --- b1/build.log 2021-09-25 08:37:48.882479207 +0000 +++ b2/build.log 2021-09-25 08:59:02.852553636 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Sep 24 20:31:56 -12 2021 -I: pbuilder-time-stamp: 1632558716 +I: Current time: Sat Sep 25 22:38:01 +14 2021 +I: pbuilder-time-stamp: 1632559081 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./bppsuite_2.4.1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.cUgbC6ub/trustedkeys.kbx': General error -gpgv: Signature made Tue Sep 15 03:04:32 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.NvFyH4vx/trustedkeys.kbx': General error +gpgv: Signature made Wed Sep 16 05:04:32 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key @@ -27,135 +27,169 @@ dpkg-source: info: unpacking bppsuite_2.4.1-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23687/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11686/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4pro0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11686/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11686/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='1135d3b2eca14f20a7151699224dd3ec' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23687' - PS1='# ' - PS2='> ' + INVOCATION_ID=9f73f188d4af4282833a762bbc21e975 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11686 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/pbuilderrc_Pp0F --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/b1 --logfile b1/build.log bppsuite_2.4.1-3.dsc' - SUDO_GID='114' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/pbuilderrc_BBUV --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/b2 --logfile b2/build.log bppsuite_2.4.1-3.dsc' + SUDO_GID=115 + SUDO_UID=111 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1b 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more - -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 20 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/23687/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more + -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 25 22:40 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 21 23:29 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/11686/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -265,7 +299,7 @@ Get: 64 http://deb.debian.org/debian bullseye/main armhf libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libxml-libxml-perl armhf 2.0134+dfsg-2+b1 [321 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf texinfo armhf 6.7.0.dfsg.2-6 [1747 kB] -Fetched 35.5 MB in 4s (9020 kB/s) +Fetched 35.5 MB in 4s (9883 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -555,7 +589,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-3_source.changes +hostname: Name or service not known +I: Running cd /build/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bppsuite_2.4.1-3_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-3 dpkg-buildpackage: info: source distribution unstable @@ -609,7 +644,7 @@ -- Build files have been written to: /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/bppsuite-2.4.1' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -622,31 +657,42 @@ cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/depend.internal". Scanning dependencies of target bppreroot make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -Scanning dependencies of target bppml +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/depend.internal". Scanning dependencies of target bppseqgen make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/depend.internal". +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/depend.internal". +Scanning dependencies of target bppml +Scanning dependencies of target bppdist +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 2%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppReRoot.cpp +[ 5%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppDist.cpp [ 7%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -[ 7%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppML.cpp +[ 10%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, @@ -674,18 +720,6 @@ 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, - from /usr/include/Bpp/Io/FileTools.h:46, - from /usr/include/Bpp/App/ApplicationTools.h:44, - from /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:50: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /build/bppsuite-2.4.1/bppSuite/bppReRoot.cpp:48: @@ -701,6 +735,18 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /usr/include/Bpp/Io/FileTools.h:46, + from /usr/include/Bpp/App/ApplicationTools.h:44, + from /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:50: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In function 'void readTreesMs(std::ifstream&, std::vector&, std::vector >&, unsigned int)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); @@ -713,22 +759,22 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 10%] Linking CXX executable bppreroot +[ 13%] Linking CXX executable bppreroot cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 10%] Built target bppreroot -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend +[ 13%] Built target bppreroot +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/depend.internal". -Scanning dependencies of target bppdist +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/depend.internal". +Scanning dependencies of target bpppars make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 13%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppDist.cpp +[ 15%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPars.cpp /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp: In function 'int main(int, char**)': /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:550:90: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 550 | tmpRates = vector(rates.begin() + previousPos, rates.begin() + currentPos); @@ -754,38 +800,6 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 15%] Linking CXX executable bppseqgen -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 15%] Built target bppseqgen -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/depend.internal". -Scanning dependencies of target bpppars -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 18%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPars.cpp -[ 21%] Linking CXX executable bppml -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 21%] Built target bppml -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/depend.internal". -Scanning dependencies of target bpptreedraw -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 23%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppTreeDraw.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, @@ -804,27 +818,27 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/Bpp/Io/FileTools.h:46, - from /usr/include/Bpp/App/ApplicationTools.h:44, - from /build/bppsuite-2.4.1/bppSuite/bppPars.cpp:51: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /usr/include/Bpp/Io/FileTools.h:46, - from /usr/include/Bpp/App/ApplicationTools.h:44, - from /build/bppsuite-2.4.1/bppSuite/bppPars.cpp:51: -/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 26%] Linking CXX executable bppdist +[ 18%] Linking CXX executable bppdist cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 26%] Built target bppdist +[ 21%] Linking CXX executable bppseqgen +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 +[ 21%] Built target bppdist +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/depend.internal". +Scanning dependencies of target bpptreedraw +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +[ 23%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppTreeDraw.cpp +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +[ 23%] Built target bppseqgen make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= @@ -834,13 +848,13 @@ make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 28%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o +[ 26%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp -[ 31%] Linking CXX executable bpppars -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 +[ 28%] Linking CXX executable bppml +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 31%] Built target bpppars +[ 28%] Built target bppml make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= @@ -850,13 +864,29 @@ make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 34%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o +[ 31%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp -[ 36%] Linking CXX executable bpptreedraw -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 +In file included from /usr/include/c++/10/vector:72, + from /usr/include/Bpp/Io/FileTools.h:46, + from /usr/include/Bpp/App/ApplicationTools.h:44, + from /build/bppsuite-2.4.1/bppSuite/bppPars.cpp:51: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /usr/include/Bpp/Io/FileTools.h:46, + from /usr/include/Bpp/App/ApplicationTools.h:44, + from /build/bppsuite-2.4.1/bppSuite/bppPars.cpp:51: +/usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 34%] Linking CXX executable bpppars +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 36%] Built target bpptreedraw +[ 34%] Built target bpppars make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= @@ -866,13 +896,13 @@ make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 39%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o +[ 36%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppConsense.cpp -[ 42%] Linking CXX executable bppalnscore -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 +[ 39%] Linking CXX executable bppseqman +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 42%] Built target bppalnscore +[ 39%] Built target bppseqman make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= @@ -882,13 +912,13 @@ make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 44%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o +[ 42%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAncestor.cpp -[ 47%] Linking CXX executable bppseqman -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 +[ 44%] Linking CXX executable bppalnscore +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 47%] Built target bppseqman +[ 44%] Built target bppalnscore make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= @@ -898,8 +928,24 @@ make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 50%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o +[ 47%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp +[ 50%] Linking CXX executable bpptreedraw +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +[ 50%] Built target bpptreedraw +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/depend.internal". +Scanning dependencies of target bpppopstats +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +[ 52%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPopStats.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, @@ -916,22 +962,61 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 52%] Linking CXX executable bppconsense +[ 55%] Linking CXX executable bppconsense cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 52%] Built target bppconsense -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend +[ 55%] Built target bppconsense +make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/depend.internal". -Scanning dependencies of target bpppopstats +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/depend.internal". +Scanning dependencies of target info make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build +make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 55%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPopStats.cpp +[ 57%] Generating info page +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc && /usr/bin/makeinfo --no-split -o /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info /build/bppsuite-2.4.1/doc/bppsuite.texi +[ 60%] Compressing info page +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info.gz +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +[ 60%] Built target info +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color= +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/depend.internal". +Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/depend.internal". +Scanning dependencies of target man +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +[ 63%] Compressing manpage bppalnscore.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppalnscore.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppalnscore.1.gz +[ 65%] Compressing manpage bppancestor.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppancestor.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppancestor.1.gz +[ 68%] Compressing manpage bppconsense.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppconsense.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppconsense.1.gz +[ 71%] Compressing manpage bppdist.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppdist.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppdist.1.gz +[ 73%] Compressing manpage bppmixedlikelihoods.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppmixedlikelihoods.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppmixedlikelihoods.1.gz +[ 76%] Compressing manpage bppml.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppml.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppml.1.gz +[ 78%] Compressing manpage bpppars.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppars.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpppars.1.gz +[ 81%] Compressing manpage bpppopstats.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppopstats.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpppopstats.1.gz +[ 84%] Compressing manpage bppreroot.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppreroot.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppreroot.1.gz +[ 86%] Compressing manpage bppseqgen.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppseqgen.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppseqgen.1.gz +[ 89%] Compressing manpage bppseqman.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppseqman.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppseqman.1.gz +[ 92%] Compressing manpage bpptreedraw.1 +cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpptreedraw.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpptreedraw.1.gz +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' +[ 92%] Built target man In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, @@ -988,66 +1073,16 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 57%] Linking CXX executable bppmixedlikelihoods +[ 94%] Linking CXX executable bppmixedlikelihoods cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 57%] Built target bppmixedlikelihoods -make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/depend.internal". -Scanning dependencies of target info -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 60%] Generating info page -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc && /usr/bin/makeinfo --no-split -o /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info /build/bppsuite-2.4.1/doc/bppsuite.texi -[ 63%] Linking CXX executable bppancestor +[ 94%] Built target bppmixedlikelihoods +[ 97%] Linking CXX executable bppancestor cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 63%] Built target bppancestor -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color= -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/depend.internal". -Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/depend.internal". -Scanning dependencies of target man -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 65%] Compressing manpage bppalnscore.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppalnscore.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppalnscore.1.gz -[ 68%] Compressing manpage bppancestor.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppancestor.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppancestor.1.gz -[ 71%] Compressing manpage bppconsense.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppconsense.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppconsense.1.gz -[ 73%] Compressing manpage bppdist.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppdist.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppdist.1.gz -[ 76%] Compressing manpage bppmixedlikelihoods.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppmixedlikelihoods.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppmixedlikelihoods.1.gz -[ 78%] Compressing manpage bppml.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppml.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppml.1.gz -[ 81%] Compressing manpage bpppars.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppars.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpppars.1.gz -[ 84%] Compressing manpage bpppopstats.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppopstats.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpppopstats.1.gz -[ 86%] Compressing manpage bppreroot.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppreroot.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppreroot.1.gz -[ 89%] Compressing manpage bppseqgen.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppseqgen.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppseqgen.1.gz -[ 92%] Compressing manpage bppseqman.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppseqman.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppseqman.1.gz -[ 94%] Compressing manpage bpptreedraw.1 -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpptreedraw.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpptreedraw.1.gz -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 94%] Built target man -[ 97%] Compressing info page -cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info.gz -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' -[ 97%] Built target info +[ 97%] Built target bppancestor In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, @@ -1076,7 +1111,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1131,17 +1166,17 @@ dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppancestor contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppalnscore contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppars contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppdist contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppml contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqgen contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqman contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppreroot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppopstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppalnscore contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppconsense contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppmixedlikelihoods contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpptreedraw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppconsense contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppopstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqgen contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppml contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppreroot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqman contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppars contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums @@ -1156,12 +1191,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11686/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11686/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23687 and its subdirectories -I: Current time: Fri Sep 24 20:37:22 -12 2021 -I: pbuilder-time-stamp: 1632559042 +I: removing directory /srv/workspace/pbuilder/11686 and its subdirectories +I: Current time: Sat Sep 25 22:58:32 +14 2021 +I: pbuilder-time-stamp: 1632560312