Diff of the two buildlogs:

--
--- b1/build.log	2021-09-07 03:12:21.391688794 +0000
+++ b2/build.log	2021-09-07 03:15:31.600866290 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Mon Sep  6 15:09:28 -12 2021
-I: pbuilder-time-stamp: 1630984168
+I: Current time: Mon Oct 10 23:35:23 +14 2022
+I: pbuilder-time-stamp: 1665394523
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
 I: copying local configuration
@@ -16,8 +16,8 @@
 I: copying [./tvc_5.0.3+git20151221.80e144e+dfsg-3.debian.tar.xz]
 I: Extracting source
 gpgv: unknown type of key resource 'trustedkeys.kbx'
-gpgv: keyblock resource '/tmp/dpkg-verify-sig.sybPxyZV/trustedkeys.kbx': General error
-gpgv: Signature made Sat Feb 29 17:51:37 2020 -12
+gpgv: keyblock resource '/tmp/dpkg-verify-sig.J1PxJ3NL/trustedkeys.kbx': General error
+gpgv: Signature made Sun Mar  1 19:51:37 2020 +14
 gpgv:                using RSA key 90E2D2C1AD146A1B7EBB891DBBC17EBB1396F2F7
 gpgv:                issuer "stuart@debian.org"
 gpgv: Can't check signature: No public key
@@ -35,135 +35,169 @@
 dpkg-source: info: applying python3.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/3992/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/27328/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink15-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/27328/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/27328/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='arm64'
-  DEBIAN_FRONTEND='noninteractive'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+  BASH_VERSION='5.1.4(1)-release'
+  BUILDDIR=/build
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=arm64
+  DEBIAN_FRONTEND=noninteractive
   DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8'
-  DISTRIBUTION=''
-  HOME='/var/lib/jenkins'
-  HOST_ARCH='arm64'
+  DIRSTACK=()
+  DISTRIBUTION=
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/var/lib/jenkins
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=aarch64
+  HOST_ARCH=arm64
   IFS=' 	
   '
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='3992'
-  PS1='# '
-  PS2='> '
+  LANG=C
+  LANGUAGE=nl_BE:nl
+  LC_ALL=C
+  MACHTYPE=aarch64-unknown-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=27328
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ZzFODBUHk3/pbuilderrc_9Hmm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ZzFODBUHk3/b1 --logfile b1/build.log tvc_5.0.3+git20151221.80e144e+dfsg-3.dsc'
-  SUDO_GID='117'
-  SUDO_UID='110'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  USERNAME='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://192.168.101.16:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ZzFODBUHk3/pbuilderrc_UisN --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ZzFODBUHk3/b2 --logfile b2/build.log tvc_5.0.3+git20151221.80e144e+dfsg-3.dsc'
+  SUDO_GID=117
+  SUDO_UID=110
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  USERNAME=root
+  _='I: set'
+  http_proxy=http://192.168.101.16:3128
 I: uname -a
-  Linux codethink12-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux
+  Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux
 I: ls -l /bin
   total 5252
-  -rwxr-xr-x 1 root root 1282512 Aug  4 08:25 bash
-  -rwxr-xr-x 3 root root   34808 Jul 20  2020 bunzip2
-  -rwxr-xr-x 3 root root   34808 Jul 20  2020 bzcat
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzcmp -> bzdiff
-  -rwxr-xr-x 1 root root    2225 Jul 20  2020 bzdiff
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzegrep -> bzgrep
-  -rwxr-xr-x 1 root root    4877 Sep  4  2019 bzexe
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzfgrep -> bzgrep
-  -rwxr-xr-x 1 root root    3775 Jul 20  2020 bzgrep
-  -rwxr-xr-x 3 root root   34808 Jul 20  2020 bzip2
-  -rwxr-xr-x 1 root root   14264 Jul 20  2020 bzip2recover
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzless -> bzmore
-  -rwxr-xr-x 1 root root    1297 Jul 20  2020 bzmore
-  -rwxr-xr-x 1 root root   39832 Sep 22  2020 cat
-  -rwxr-xr-x 1 root root   64512 Sep 22  2020 chgrp
-  -rwxr-xr-x 1 root root   60368 Sep 22  2020 chmod
-  -rwxr-xr-x 1 root root   64528 Sep 22  2020 chown
-  -rwxr-xr-x 1 root root  138896 Sep 22  2020 cp
-  -rwxr-xr-x 1 root root  129544 Dec 10  2020 dash
-  -rwxr-xr-x 1 root root  101384 Sep 22  2020 date
-  -rwxr-xr-x 1 root root   80984 Sep 22  2020 dd
-  -rwxr-xr-x 1 root root   89824 Sep 22  2020 df
-  -rwxr-xr-x 1 root root  143088 Sep 22  2020 dir
-  -rwxr-xr-x 1 root root   76152 Jul 28 07:09 dmesg
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 dnsdomainname -> hostname
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 domainname -> hostname
-  -rwxr-xr-x 1 root root   35632 Sep 22  2020 echo
-  -rwxr-xr-x 1 root root      28 Nov  9  2020 egrep
-  -rwxr-xr-x 1 root root   31512 Sep 22  2020 false
-  -rwxr-xr-x 1 root root      28 Nov  9  2020 fgrep
-  -rwxr-xr-x 1 root root   64856 Jul 28 07:09 findmnt
-  -rwsr-xr-x 1 root root   34824 Feb 26  2021 fusermount
-  -rwxr-xr-x 1 root root  178400 Nov  9  2020 grep
-  -rwxr-xr-x 2 root root    2346 Mar  2  2021 gunzip
-  -rwxr-xr-x 1 root root    6376 Mar  2  2021 gzexe
-  -rwxr-xr-x 1 root root   93744 Mar  2  2021 gzip
-  -rwxr-xr-x 1 root root   18440 Nov  6  2019 hostname
-  -rwxr-xr-x 1 root root   68720 Sep 22  2020 ln
-  -rwxr-xr-x 1 root root   52720 Feb  7  2020 login
-  -rwxr-xr-x 1 root root  143088 Sep 22  2020 ls
-  -rwxr-xr-x 1 root root  161960 Jul 28 07:09 lsblk
-  -rwxr-xr-x 1 root root   85200 Sep 22  2020 mkdir
-  -rwxr-xr-x 1 root root   68744 Sep 22  2020 mknod
-  -rwxr-xr-x 1 root root   43976 Sep 22  2020 mktemp
-  -rwxr-xr-x 1 root root   51368 Jul 28 07:09 more
-  -rwsr-xr-x 1 root root   51360 Jul 28 07:09 mount
-  -rwxr-xr-x 1 root root   14496 Jul 28 07:09 mountpoint
-  -rwxr-xr-x 1 root root  134808 Sep 22  2020 mv
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 nisdomainname -> hostname
-  lrwxrwxrwx 1 root root      14 Apr 18 03:38 pidof -> /sbin/killall5
-  -rwxr-xr-x 1 root root   35720 Sep 22  2020 pwd
-  lrwxrwxrwx 1 root root       4 Aug  4 08:25 rbash -> bash
-  -rwxr-xr-x 1 root root   43872 Sep 22  2020 readlink
-  -rwxr-xr-x 1 root root   68592 Sep 22  2020 rm
-  -rwxr-xr-x 1 root root   43880 Sep 22  2020 rmdir
-  -rwxr-xr-x 1 root root   19208 Sep 27  2020 run-parts
-  -rwxr-xr-x 1 root root  114016 Dec 22  2018 sed
-  lrwxrwxrwx 1 root root       4 Aug 20 21:24 sh -> dash
-  -rwxr-xr-x 1 root root   35656 Sep 22  2020 sleep
-  -rwxr-xr-x 1 root root   72640 Sep 22  2020 stty
-  -rwsr-xr-x 1 root root   67776 Jul 28 07:09 su
-  -rwxr-xr-x 1 root root   35672 Sep 22  2020 sync
-  -rwxr-xr-x 1 root root  535768 Feb 16  2021 tar
-  -rwxr-xr-x 1 root root   10568 Sep 27  2020 tempfile
-  -rwxr-xr-x 1 root root   89120 Sep 22  2020 touch
-  -rwxr-xr-x 1 root root   31512 Sep 22  2020 true
-  -rwxr-xr-x 1 root root   14264 Feb 26  2021 ulockmgr_server
-  -rwsr-xr-x 1 root root   30880 Jul 28 07:09 umount
-  -rwxr-xr-x 1 root root   35640 Sep 22  2020 uname
-  -rwxr-xr-x 2 root root    2346 Mar  2  2021 uncompress
-  -rwxr-xr-x 1 root root  143088 Sep 22  2020 vdir
-  -rwxr-xr-x 1 root root   59584 Jul 28 07:09 wdctl
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 ypdomainname -> hostname
-  -rwxr-xr-x 1 root root    1984 Mar  2  2021 zcat
-  -rwxr-xr-x 1 root root    1678 Mar  2  2021 zcmp
-  -rwxr-xr-x 1 root root    5880 Mar  2  2021 zdiff
-  -rwxr-xr-x 1 root root      29 Mar  2  2021 zegrep
-  -rwxr-xr-x 1 root root      29 Mar  2  2021 zfgrep
-  -rwxr-xr-x 1 root root    2081 Mar  2  2021 zforce
-  -rwxr-xr-x 1 root root    7585 Mar  2  2021 zgrep
-  -rwxr-xr-x 1 root root    2206 Mar  2  2021 zless
-  -rwxr-xr-x 1 root root    1842 Mar  2  2021 zmore
-  -rwxr-xr-x 1 root root    4553 Mar  2  2021 znew
-I: user script /srv/workspace/pbuilder/3992/tmp/hooks/D02_print_environment finished
+  -rwxr-xr-x 1 root root 1282512 Aug  5  2021 bash
+  -rwxr-xr-x 3 root root   34808 Jul 21  2020 bunzip2
+  -rwxr-xr-x 3 root root   34808 Jul 21  2020 bzcat
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzcmp -> bzdiff
+  -rwxr-xr-x 1 root root    2225 Jul 21  2020 bzdiff
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzegrep -> bzgrep
+  -rwxr-xr-x 1 root root    4877 Sep  5  2019 bzexe
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzfgrep -> bzgrep
+  -rwxr-xr-x 1 root root    3775 Jul 21  2020 bzgrep
+  -rwxr-xr-x 3 root root   34808 Jul 21  2020 bzip2
+  -rwxr-xr-x 1 root root   14264 Jul 21  2020 bzip2recover
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzless -> bzmore
+  -rwxr-xr-x 1 root root    1297 Jul 21  2020 bzmore
+  -rwxr-xr-x 1 root root   39832 Sep 23  2020 cat
+  -rwxr-xr-x 1 root root   64512 Sep 23  2020 chgrp
+  -rwxr-xr-x 1 root root   60368 Sep 23  2020 chmod
+  -rwxr-xr-x 1 root root   64528 Sep 23  2020 chown
+  -rwxr-xr-x 1 root root  138896 Sep 23  2020 cp
+  -rwxr-xr-x 1 root root  129544 Dec 11  2020 dash
+  -rwxr-xr-x 1 root root  101384 Sep 23  2020 date
+  -rwxr-xr-x 1 root root   80984 Sep 23  2020 dd
+  -rwxr-xr-x 1 root root   89824 Sep 23  2020 df
+  -rwxr-xr-x 1 root root  143088 Sep 23  2020 dir
+  -rwxr-xr-x 1 root root   76152 Jul 29  2021 dmesg
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 dnsdomainname -> hostname
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 domainname -> hostname
+  -rwxr-xr-x 1 root root   35632 Sep 23  2020 echo
+  -rwxr-xr-x 1 root root      28 Nov 10  2020 egrep
+  -rwxr-xr-x 1 root root   31512 Sep 23  2020 false
+  -rwxr-xr-x 1 root root      28 Nov 10  2020 fgrep
+  -rwxr-xr-x 1 root root   64856 Jul 29  2021 findmnt
+  -rwsr-xr-x 1 root root   34824 Feb 27  2021 fusermount
+  -rwxr-xr-x 1 root root  178400 Nov 10  2020 grep
+  -rwxr-xr-x 2 root root    2346 Mar  3  2021 gunzip
+  -rwxr-xr-x 1 root root    6376 Mar  3  2021 gzexe
+  -rwxr-xr-x 1 root root   93744 Mar  3  2021 gzip
+  -rwxr-xr-x 1 root root   18440 Nov  8  2019 hostname
+  -rwxr-xr-x 1 root root   68720 Sep 23  2020 ln
+  -rwxr-xr-x 1 root root   52720 Feb  8  2020 login
+  -rwxr-xr-x 1 root root  143088 Sep 23  2020 ls
+  -rwxr-xr-x 1 root root  161960 Jul 29  2021 lsblk
+  -rwxr-xr-x 1 root root   85200 Sep 23  2020 mkdir
+  -rwxr-xr-x 1 root root   68744 Sep 23  2020 mknod
+  -rwxr-xr-x 1 root root   43976 Sep 23  2020 mktemp
+  -rwxr-xr-x 1 root root   51368 Jul 29  2021 more
+  -rwsr-xr-x 1 root root   51360 Jul 29  2021 mount
+  -rwxr-xr-x 1 root root   14496 Jul 29  2021 mountpoint
+  -rwxr-xr-x 1 root root  134808 Sep 23  2020 mv
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 nisdomainname -> hostname
+  lrwxrwxrwx 1 root root      14 Apr 19  2021 pidof -> /sbin/killall5
+  -rwxr-xr-x 1 root root   35720 Sep 23  2020 pwd
+  lrwxrwxrwx 1 root root       4 Aug  5  2021 rbash -> bash
+  -rwxr-xr-x 1 root root   43872 Sep 23  2020 readlink
+  -rwxr-xr-x 1 root root   68592 Sep 23  2020 rm
+  -rwxr-xr-x 1 root root   43880 Sep 23  2020 rmdir
+  -rwxr-xr-x 1 root root   19208 Sep 28  2020 run-parts
+  -rwxr-xr-x 1 root root  114016 Dec 23  2018 sed
+  lrwxrwxrwx 1 root root       4 Oct 10 23:35 sh -> bash
+  lrwxrwxrwx 1 root root       4 Sep 24 05:47 sh.distrib -> dash
+  -rwxr-xr-x 1 root root   35656 Sep 23  2020 sleep
+  -rwxr-xr-x 1 root root   72640 Sep 23  2020 stty
+  -rwsr-xr-x 1 root root   67776 Jul 29  2021 su
+  -rwxr-xr-x 1 root root   35672 Sep 23  2020 sync
+  -rwxr-xr-x 1 root root  535768 Feb 17  2021 tar
+  -rwxr-xr-x 1 root root   10568 Sep 28  2020 tempfile
+  -rwxr-xr-x 1 root root   89120 Sep 23  2020 touch
+  -rwxr-xr-x 1 root root   31512 Sep 23  2020 true
+  -rwxr-xr-x 1 root root   14264 Feb 27  2021 ulockmgr_server
+  -rwsr-xr-x 1 root root   30880 Jul 29  2021 umount
+  -rwxr-xr-x 1 root root   35640 Sep 23  2020 uname
+  -rwxr-xr-x 2 root root    2346 Mar  3  2021 uncompress
+  -rwxr-xr-x 1 root root  143088 Sep 23  2020 vdir
+  -rwxr-xr-x 1 root root   59584 Jul 29  2021 wdctl
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 ypdomainname -> hostname
+  -rwxr-xr-x 1 root root    1984 Mar  3  2021 zcat
+  -rwxr-xr-x 1 root root    1678 Mar  3  2021 zcmp
+  -rwxr-xr-x 1 root root    5880 Mar  3  2021 zdiff
+  -rwxr-xr-x 1 root root      29 Mar  3  2021 zegrep
+  -rwxr-xr-x 1 root root      29 Mar  3  2021 zfgrep
+  -rwxr-xr-x 1 root root    2081 Mar  3  2021 zforce
+  -rwxr-xr-x 1 root root    7585 Mar  3  2021 zgrep
+  -rwxr-xr-x 1 root root    2206 Mar  3  2021 zless
+  -rwxr-xr-x 1 root root    1842 Mar  3  2021 zmore
+  -rwxr-xr-x 1 root root    4553 Mar  3  2021 znew
+I: user script /srv/workspace/pbuilder/27328/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -298,7 +332,7 @@
 Get: 85 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp-dev arm64 1.9.4-4 [25.4 kB]
 Get: 86 http://deb.debian.org/debian bullseye/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-11 [32.8 kB]
 Get: 87 http://deb.debian.org/debian bullseye/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-11 [37.4 kB]
-Fetched 47.5 MB in 3s (14.4 MB/s)
+Fetched 47.5 MB in 1s (56.7 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package bsdextrautils.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19646 files and directories currently installed.)
@@ -667,7 +701,8 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../tvc_5.0.3+git20151221.80e144e+dfsg-3_source.changes
+hostname: Temporary failure in name resolution
+I: Running cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../tvc_5.0.3+git20151221.80e144e+dfsg-3_source.changes
 dpkg-buildpackage: info: source package tvc
 dpkg-buildpackage: info: source version 5.0.3+git20151221.80e144e+dfsg-3
 dpkg-buildpackage: info: source distribution unstable
@@ -721,17 +756,17 @@
 make  -f CMakeFiles/tvcassembly.dir/build.make CMakeFiles/tvcassembly.dir/depend
 make  -f CMakeFiles/tvc.dir/build.make CMakeFiles/tvc.dir/depend
 make[3]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
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   503 |       strncpy (keyword, buf, strlen (buf)-1);
       |                              ~~~~~~~^~~~~
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+[ 25%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/HotspotReader.cpp.o
+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/VariantCaller/HotspotReader.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/HotspotReader.cpp
+[ 26%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o
+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/MetricsManager.cpp
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/VariantCaller.cpp: In function 'void TheSilenceOfTheArmadillos(std::ofstream&)':
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/VariantCaller.cpp:36:9: warning: 'void arma::set_stream_err1(std::ostream&)' is deprecated [-Wdeprecated-declarations]
    36 |   arma::set_stream_err1(null_ostream);
@@ -819,51 +858,14 @@
 /usr/include/armadillo_bits/debug.hpp:101:1: note: declared here
   101 | set_stream_err2(std::ostream& user_stream)
       | ^~~~~~~~~~~~~~~
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-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c: In function 'ti_index_core':
-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c:336:35: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int32_t' {aka 'int'} changes value from 'last_bin = 4294967295' to '-1' [-Woverflow]
-  336 |  save_bin = save_tid = last_tid = last_bin = 0xffffffffu;
-      |                                   ^~~~~~~~
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-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c: In function '_bgzf_check_EOF':
-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:678:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
-  678 |  fread(buf, 1, 28, fp->file);
-      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 37%] Building CXX object CMakeFiles/tvcutils.dir/IonVersion.cpp.o
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-[ 39%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/HandleVariant.cpp.o
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 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/InputStructures.cpp: In member function 'void RecalibrationHandler::ReadRecalibrationFromComments(const BamTools::SamHeader&, const std::map<std::__cxx11::basic_string<char>, int>&)':
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/InputStructures.cpp:240:18: warning: 'Reader' is deprecated: Use CharReader and CharReaderBuilder instead. [-Wdeprecated-declarations]
   240 |     Json::Reader recal_reader;
@@ -887,69 +889,95 @@
 /usr/include/jsoncpp/json/reader.h:56:3: note: declared here
    56 |   Reader();
       |   ^~~~~~
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+[ 65%] Building C object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o
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+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c: In function 'ti_index_core':
+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c:336:35: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int32_t' {aka 'int'} changes value from 'last_bin = 4294967295' to '-1' [-Woverflow]
+  336 |  save_bin = save_tid = last_tid = last_bin = 0xffffffffu;
+      |                                   ^~~~~~~~
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-[ 75%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/CrossHypotheses.cpp.o
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+/usr/bin/cc -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c
+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c: In function '_bgzf_check_EOF':
+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:678:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
+  678 |  fread(buf, 1, 28, fp->file);
+      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
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 /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c: In function 'ti_index_core':
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c:336:35: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int32_t' {aka 'int'} changes value from 'last_bin = 4294967295' to '-1' [-Woverflow]
   336 |  save_bin = save_tid = last_tid = last_bin = 0xffffffffu;
       |                                   ^~~~~~~~
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 /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c: In function '_bgzf_check_EOF':
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:678:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   678 |  fread(buf, 1, 28, fp->file);
       |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
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 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/BaseCaller/PIDloop.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/PIDloop.cpp
-[ 87%] Building CXX object CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o
+[ 85%] Building CXX object CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o
 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/BaseCaller/DPTreephaser.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/DPTreephaser.cpp
-[ 89%] Building CXX object CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o
+[ 87%] Building CXX object CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o
 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/Calibration/LinearCalibrationModel.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration/LinearCalibrationModel.cpp
-[ 90%] Building CXX object CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o
-/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration/FlowAlignment.cpp
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration/LinearCalibrationModel.cpp: In member function 'void LinearCalibrationModel::SaveModelFileToBamComments(std::vector<std::__cxx11::basic_string<char> >&, const string&) const':
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration/LinearCalibrationModel.cpp:708:20: warning: 'FastWriter' is deprecated: Use StreamWriterBuilder instead [-Wdeprecated-declarations]
   708 |   Json::FastWriter writer;
@@ -961,6 +989,13 @@
 /usr/include/jsoncpp/json/writer.h:168:70: note: declared here
   168 | class JSONCPP_DEPRECATED("Use StreamWriterBuilder instead") JSON_API FastWriter
       |                                                                      ^~~~~~~~~~
+[ 89%] Building CXX object CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o
+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/Calibration/FlowAlignment.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration/FlowAlignment.cpp
+[ 90%] Linking CXX executable tvcutils
+/usr/bin/cmake -E cmake_link_script CMakeFiles/tvcutils.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -o tvcutils  -lbamtools -lz -ljsoncpp -lsmithwaterman -ldisorder 
+make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
+[ 90%] Built target tvcutils
 [ 92%] Building CXX object CMakeFiles/tvc.dir/Util/OptArgs.cpp.o
 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -fdebug-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/tvc.dir/Util/OptArgs.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp
 [ 93%] Building CXX object CMakeFiles/tvc.dir/realignment/Realigner.cpp.o
@@ -999,12 +1034,12 @@
 4/8 Test #6: tvcutils_validate_bed_call .......................   Passed    0.01 sec
 5/8 Test #7: tvcutils_unify_vcf_call ..........................   Passed    0.01 sec
 6/8 Test #8: tvcassembly_call .................................   Passed    0.01 sec
-7/8 Test #2: tvc_test_1_thread_sse_off ........................   Passed    1.75 sec
-8/8 Test #3: tvc_test_4_threads_sse_off_with_parameter_file ...   Passed    1.79 sec
+7/8 Test #2: tvc_test_1_thread_sse_off ........................   Passed    1.71 sec
+8/8 Test #3: tvc_test_4_threads_sse_off_with_parameter_file ...   Passed    1.74 sec
 
 100% tests passed, 0 tests failed out of 8
 
-Total Test time (real) =   1.79 sec
+Total Test time (real) =   1.75 sec
 make[1]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
    create-stamp debian/debhelper-build-stamp
    dh_prep
@@ -1019,15 +1054,15 @@
 make  -f CMakeFiles/tvcassembly.dir/build.make CMakeFiles/tvcassembly.dir/depend
 make  -f CMakeFiles/tvc.dir/build.make CMakeFiles/tvc.dir/depend
 make[3]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
-cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu/CMakeFiles/tvcassembly.dir/DependInfo.cmake --color=
 make[3]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
+cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu/CMakeFiles/tvcassembly.dir/DependInfo.cmake --color=
 cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu/CMakeFiles/tvcutils.dir/DependInfo.cmake --color=
 make[3]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
 cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu/CMakeFiles/tvc.dir/DependInfo.cmake --color=
 make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
+make  -f CMakeFiles/tvcassembly.dir/build.make CMakeFiles/tvcassembly.dir/build
 make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
 make  -f CMakeFiles/tvcutils.dir/build.make CMakeFiles/tvcutils.dir/build
-make  -f CMakeFiles/tvcassembly.dir/build.make CMakeFiles/tvcassembly.dir/build
 make[3]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
 make[3]: Nothing to be done for 'CMakeFiles/tvcassembly.dir/build'.
 make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-aarch64-linux-gnu'
@@ -1100,8 +1135,8 @@
    dh_gencontrol
    dh_md5sums
    dh_builddeb
-dpkg-deb: building package 'tvc' in '../tvc_5.0.3+git20151221.80e144e+dfsg-3_arm64.deb'.
 dpkg-deb: building package 'tvc-dbgsym' in '../tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-3_arm64.deb'.
+dpkg-deb: building package 'tvc' in '../tvc_5.0.3+git20151221.80e144e+dfsg-3_arm64.deb'.
  dpkg-genbuildinfo --build=binary
  dpkg-genchanges --build=binary >../tvc_5.0.3+git20151221.80e144e+dfsg-3_arm64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1109,12 +1144,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/27328/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/27328/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/3992 and its subdirectories
-I: Current time: Mon Sep  6 15:12:20 -12 2021
-I: pbuilder-time-stamp: 1630984340
+I: removing directory /srv/workspace/pbuilder/27328 and its subdirectories
+I: Current time: Mon Oct 10 23:38:29 +14 2022
+I: pbuilder-time-stamp: 1665394709