Diff of the two buildlogs: -- --- b1/build.log 2021-10-05 15:12:34.559000494 +0000 +++ b2/build.log 2021-10-05 15:14:16.363540342 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Oct 5 03:11:05 -12 2021 -I: pbuilder-time-stamp: 1633446665 +I: Current time: Tue Nov 8 11:35:37 +14 2022 +I: pbuilder-time-stamp: 1667856937 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./proftmb_1.1.12-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.3rFKxjTi/trustedkeys.kbx': General error -gpgv: Signature made Wed Nov 25 19:13:30 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.jM2GVoB7/trustedkeys.kbx': General error +gpgv: Signature made Thu Nov 26 21:13:30 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,169 @@ dpkg-source: info: applying gcc-6.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4175/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/23025/tmp/hooks/D01_modify_environment starting +debug: Running on codethink11-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/23025/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/23025/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4175' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=23025 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ow3RWXAUIA/pbuilderrc_EXEG --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ow3RWXAUIA/b1 --logfile b1/build.log proftmb_1.1.12-9.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ow3RWXAUIA/pbuilderrc_A4dP --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ow3RWXAUIA/b2 --logfile b2/build.log proftmb_1.1.12-9.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink10-arm64 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more - -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 20 21:25 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/4175/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 2021 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 2021 more + -rwsr-xr-x 1 root root 51360 Jul 29 2021 mount + -rwxr-xr-x 1 root root 14496 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Nov 8 11:35 sh -> bash + lrwxrwxrwx 1 root root 4 Oct 25 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 2021 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 2021 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/23025/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -237,7 +271,7 @@ Get: 35 http://deb.debian.org/debian bullseye/main arm64 libgsl25 arm64 2.6+dfsg-2 [812 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libgsl-dev arm64 2.6+dfsg-2 [1006 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 opt arm64 3.19-1.3+b1 [40.7 kB] -Fetched 20.1 MB in 0s (49.6 MB/s) +Fetched 20.1 MB in 0s (48.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -401,7 +435,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../proftmb_1.1.12-9_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../proftmb_1.1.12-9_source.changes dpkg-buildpackage: info: source package proftmb dpkg-buildpackage: info: source version 1.1.12-9 dpkg-buildpackage: info: source distribution unstable @@ -498,18 +533,7 @@ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectC.o ExpectC.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Forward.o Forward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GradientDescent.o GradientDescent.cpp -In file included from TrainSeq.h:5, - from Eval.h:11, - from Eval.cpp:6: -Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 85 | bool InitLabels(set >&) throw (string&); - | ^~~~~ -Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 194 | static map > > Read(char*) throw (string&); - | ^~~~~ -In file included from TrainSeq.h:6, - from Eval.h:11, - from Eval.cpp:6: +In file included from GradientDescent.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -531,18 +555,7 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -In file included from Eval.cpp:6: -Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); - | ^~~~~ -In file included from Forward.cpp:1: -Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 85 | bool InitLabels(set >&) throw (string&); - | ^~~~~ -Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 194 | static map > > Read(char*) throw (string&); - | ^~~~~ -In file included from Forward.cpp:2: +In file included from Backward.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -564,22 +577,6 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -In file included from Backward.cpp:1: -Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 34 | static void LoadL2L(char*) throw (string&); - | ^~~~~ -Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 35 | static void LoadL2A(char*) throw (string&); - | ^~~~~ -Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 36 | static void LoadA2E(char*) throw (string&); - | ^~~~~ -Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 37 | static void LoadConnect(char*) throw (string&); - | ^~~~~ -Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 40 | vector&) throw (string&); - | ^~~~~ In file included from TrainSeq.h:5, from ExpectC.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -588,8 +585,7 @@ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ -In file included from TrainSeq.h:6, - from ExpectC.cpp:1: +In file included from proftmb.cpp:14: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -605,7 +601,8 @@ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ -In file included from BaumWelch.cpp:1: +In file included from TrainSeq.h:6, + from ExpectC.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -633,67 +630,22 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 120 | static void ReadZCurve(char *) throw (string &); - | ^~~~~ -Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 121 | static void ReadNullFreq(char *) throw (string &); - | ^~~~~ -In file included from proftmb.cpp:14: -Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 34 | static void LoadL2L(char*) throw (string&); - | ^~~~~ -Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 35 | static void LoadL2A(char*) throw (string&); - | ^~~~~ -Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 36 | static void LoadA2E(char*) throw (string&); - | ^~~~~ -Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 37 | static void LoadConnect(char*) throw (string&); - | ^~~~~ -Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 40 | vector&) throw (string&); - | ^~~~~ -Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 120 | static void ReadZCurve(char *) throw (string &); - | ^~~~~ -Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 121 | static void ReadNullFreq(char *) throw (string &); - | ^~~~~ -In file included from TrainSeq.h:5, - from ExpectA.cpp:1: +In file included from HTools.h:4, + from Backward.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ -In file included from HTools.h:4, - from Backward.cpp:2: +In file included from TrainSeq.h:5, + from GradientDescent.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ -In file included from TrainSeq.h:6, - from ExpectA.cpp:1: -Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 34 | static void LoadL2L(char*) throw (string&); - | ^~~~~ -Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 35 | static void LoadL2A(char*) throw (string&); - | ^~~~~ -Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 36 | static void LoadA2E(char*) throw (string&); - | ^~~~~ -Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 37 | static void LoadConnect(char*) throw (string&); - | ^~~~~ -Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 40 | vector&) throw (string&); - | ^~~~~ In file included from TrainSeq.h:5, from proftmb.cpp:15: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -713,12 +665,6 @@ Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 9 | Z_Calibrate(set >&,int,double) throw (string&); | ^~~~~ -Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 120 | static void ReadZCurve(char *) throw (string &); - | ^~~~~ -Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 121 | static void ReadNullFreq(char *) throw (string &); - | ^~~~~ In file included from proftmb.cpp:22: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); @@ -726,18 +672,18 @@ proftmb.cpp:68:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 68 | const char *, double, Par&, const char*, bool) throw (string &); | ^~~~~ -Eval.cpp:654:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 654 | float RelativeEntropy(vector& A, vector& B) throw (char *){ - | ^~~~~ In file included from TrainSeq.h:5, - from BaumWelch.cpp:2: + from Eval.h:11, + from Eval.cpp:6: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ -In file included from GradientDescent.cpp:1: +In file included from TrainSeq.h:6, + from Eval.h:11, + from Eval.cpp:6: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -753,31 +699,44 @@ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ -proftmb.cpp:273:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 273 | const char *datfile, double cut, Par& m, const char *name, bool multiQ) throw (string &) { - | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -In file included from TrainSeq.h:5, - from GradientDescent.cpp:2: +In file included from Eval.cpp:6: +Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); + | ^~~~~ +proftmb.cpp:273:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 273 | const char *datfile, double cut, Par& m, const char *name, bool multiQ) throw (string &) { + | ^~~~~ +In file included from Forward.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMOutput.o HMMOutput.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HTools.o HTools.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp +In file included from Forward.cpp:2: +Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 34 | static void LoadL2L(char*) throw (string&); + | ^~~~~ +Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 35 | static void LoadL2A(char*) throw (string&); + | ^~~~~ +Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 36 | static void LoadA2E(char*) throw (string&); + | ^~~~~ +Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 37 | static void LoadConnect(char*) throw (string&); + | ^~~~~ +Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 40 | vector&) throw (string&); + | ^~~~~ In file included from TrainSeq.h:5, - from HMMEval.h:5, - from HMMEval.cpp:1: + from ExpectA.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ @@ -785,8 +744,7 @@ 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, - from HMMEval.h:5, - from HMMEval.cpp:1: + from ExpectA.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -808,7 +766,50 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Output.o Output.cpp +Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 120 | static void ReadZCurve(char *) throw (string &); + | ^~~~~ +Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 121 | static void ReadNullFreq(char *) throw (string &); + | ^~~~~ +In file included from BaumWelch.cpp:1: +Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 34 | static void LoadL2L(char*) throw (string&); + | ^~~~~ +Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 35 | static void LoadL2A(char*) throw (string&); + | ^~~~~ +Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 36 | static void LoadA2E(char*) throw (string&); + | ^~~~~ +Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 37 | static void LoadConnect(char*) throw (string&); + | ^~~~~ +Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 40 | vector&) throw (string&); + | ^~~~~ +Eval.cpp:654:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 654 | float RelativeEntropy(vector& A, vector& B) throw (char *){ + | ^~~~~ +Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 120 | static void ReadZCurve(char *) throw (string &); + | ^~~~~ +Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 121 | static void ReadNullFreq(char *) throw (string &); + | ^~~~~ +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp +In file included from TrainSeq.h:5, + from BaumWelch.cpp:2: +Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 85 | bool InitLabels(set >&) throw (string&); + | ^~~~~ +Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 194 | static map > > Read(char*) throw (string&); + | ^~~~~ +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMOutput.o HMMOutput.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HTools.o HTools.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp In file included from HTools.h:4, from HTools.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -834,12 +835,6 @@ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ -Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 120 | static void ReadZCurve(char *) throw (string &); - | ^~~~~ -Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 121 | static void ReadNullFreq(char *) throw (string &); - | ^~~~~ In file included from HMMOutput.h:4, from HMMOutput.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -871,6 +866,18 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ +In file included from TrainSeq.h:5, + from HMMEval.h:5, + from HMMEval.cpp:1: +Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 85 | bool InitLabels(set >&) throw (string&); + | ^~~~~ +Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 120 | static void ReadZCurve(char *) throw (string &); + | ^~~~~ +Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 121 | static void ReadNullFreq(char *) throw (string &); + | ^~~~~ In file included from HMMOutput.cpp:1: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 21 | void DisplayArch(ostream&,Par&,uint,char* =""); @@ -878,11 +885,16 @@ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 24 | void PrintEmit(ostream&,Par&,uint,char* =""); | ^ +Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 194 | static map > > Read(char*) throw (string&); + | ^~~~~ In file included from HMMOutput.cpp:2: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); | ^~~~~ -In file included from Krogh1Best.cpp:1: +In file included from TrainSeq.h:6, + from HMMEval.h:5, + from HMMEval.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -904,13 +916,7 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -In file included from Krogh1Best.cpp:2: -Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 85 | bool InitLabels(set >&) throw (string&); - | ^~~~~ -Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 194 | static map > > Read(char*) throw (string&); - | ^~~~~ +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Output.o Output.cpp In file included from TrainSeq.h:5, from Load.h:4, from Load.cpp:1: @@ -944,27 +950,7 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Par.o Par.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Posterior.o Posterior.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Regularization.o Regularization.cpp -In file included from Par.cpp:1: -Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 34 | static void LoadL2L(char*) throw (string&); - | ^~~~~ -Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 35 | static void LoadL2A(char*) throw (string&); - | ^~~~~ -Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 36 | static void LoadA2E(char*) throw (string&); - | ^~~~~ -Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 37 | static void LoadConnect(char*) throw (string&); - | ^~~~~ -Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 40 | vector&) throw (string&); - | ^~~~~ -In file included from Params.cpp:1: +In file included from Krogh1Best.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -986,29 +972,15 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 120 | static void ReadZCurve(char *) throw (string &); - | ^~~~~ -Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 121 | static void ReadNullFreq(char *) throw (string &); - | ^~~~~ -In file included from TrainSeq.h:5, - from Load.h:4, - from Par.cpp:4: -Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 85 | bool InitLabels(set >&) throw (string&); - | ^~~~~ -Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - 194 | static map > > Read(char*) throw (string&); - | ^~~~~ -In file included from Posterior.cpp:1: +In file included from Krogh1Best.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ -In file included from Posterior.cpp:2: +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Par.o Par.cpp +In file included from Par.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ @@ -1030,6 +1002,18 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ +In file included from TrainSeq.h:5, + from Load.h:4, + from Par.cpp:4: +Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 85 | bool InitLabels(set >&) throw (string&); + | ^~~~~ +Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 194 | static map > > Read(char*) throw (string&); + | ^~~~~ +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Posterior.o Posterior.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Regularization.o Regularization.cpp Par.cpp:263:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 263 | void Par::LoadConnect(char* cf) throw (string&){ | ^~~~~ @@ -1052,6 +1036,51 @@ 763 | void Par::ReadNullFreq(char *ifile) throw (string&){ | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Seq.o Seq.cpp +In file included from Params.cpp:1: +Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 34 | static void LoadL2L(char*) throw (string&); + | ^~~~~ +Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 35 | static void LoadL2A(char*) throw (string&); + | ^~~~~ +Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 36 | static void LoadA2E(char*) throw (string&); + | ^~~~~ +Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 37 | static void LoadConnect(char*) throw (string&); + | ^~~~~ +Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 40 | vector&) throw (string&); + | ^~~~~ +Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 120 | static void ReadZCurve(char *) throw (string &); + | ^~~~~ +Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 121 | static void ReadNullFreq(char *) throw (string &); + | ^~~~~ +In file included from Posterior.cpp:1: +Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 85 | bool InitLabels(set >&) throw (string&); + | ^~~~~ +Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 194 | static map > > Read(char*) throw (string&); + | ^~~~~ +In file included from Posterior.cpp:2: +Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 34 | static void LoadL2L(char*) throw (string&); + | ^~~~~ +Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 35 | static void LoadL2A(char*) throw (string&); + | ^~~~~ +Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 36 | static void LoadA2E(char*) throw (string&); + | ^~~~~ +Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 37 | static void LoadConnect(char*) throw (string&); + | ^~~~~ +Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 40 | vector&) throw (string&); + | ^~~~~ In file included from Regularization.cpp:7: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); @@ -1074,10 +1103,12 @@ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp +Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 120 | static void ReadZCurve(char *) throw (string &); + | ^~~~~ +Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + 121 | static void ReadNullFreq(char *) throw (string &); + | ^~~~~ In file included from Seq.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); @@ -1101,20 +1132,24 @@ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp Seq.cpp:99:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 99 | bool Seq::InitLabels(SS& sdat) throw (string&){ | ^~~~~ +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp Seq.cpp:313:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 313 | map Seq::Read(char* file) throw (string&){ | ^~~~~ +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp In file included from structs.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); @@ -1290,8 +1325,8 @@ mkdir -p "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' cp "."/input/* "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/" - /usr/bin/install -c -m 644 README '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' rm -rf `find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -name .svn` + /usr/bin/install -c -m 644 README '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type d -exec chmod 0755 {} \; find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type f -exec chmod 0644 {} \; make install-data-hook @@ -1321,8 +1356,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-9_arm64.deb'. dpkg-deb: building package 'proftmb' in '../proftmb_1.1.12-9_arm64.deb'. +dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-9_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../proftmb_1.1.12-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1330,12 +1365,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/23025/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/23025/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4175 and its subdirectories -I: Current time: Tue Oct 5 03:12:33 -12 2021 -I: pbuilder-time-stamp: 1633446753 +I: removing directory /srv/workspace/pbuilder/23025 and its subdirectories +I: Current time: Tue Nov 8 11:37:15 +14 2022 +I: pbuilder-time-stamp: 1667857035