Diff of the two buildlogs: -- --- b1/build.log 2021-07-12 07:19:09.507910009 +0000 +++ b2/build.log 2021-07-12 07:21:23.074891783 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Aug 14 01:40:06 -12 2022 -I: pbuilder-time-stamp: 1660484406 +I: Current time: Mon Jul 12 21:19:16 +14 2021 +I: pbuilder-time-stamp: 1626074356 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.U3dhlZRM/trustedkeys.kbx': General error -gpgv: Signature made Wed Nov 25 10:44:52 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.WTcWVZn3/trustedkeys.kbx': General error +gpgv: Signature made Thu Nov 26 12:44:52 2020 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc @@ -35,135 +35,169 @@ dpkg-source: info: applying specify-link-args.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23714/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11294/tmp/hooks/D01_modify_environment starting +debug: Running on codethink16-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11294/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11294/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23714' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11294 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.I9tcDN9nHS/pbuilderrc_eIgC --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.I9tcDN9nHS/b1 --logfile b1/build.log kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.I9tcDN9nHS/pbuilderrc_ZruM --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.I9tcDN9nHS/b2 --logfile b2/build.log --extrapackages usrmerge kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink13-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Feb 7 2021 more - -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount - -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 13 03:48 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Feb 7 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/23714/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more + -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 12 21:19 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 10 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/11294/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -359,7 +393,7 @@ Get: 132 http://deb.debian.org/debian bullseye/main arm64 python3-pytest-xdist all 2.2.0-1 [43.5 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] Get: 134 http://deb.debian.org/debian bullseye/main arm64 python3-uritools all 3.0.0-2 [28.0 kB] -Fetched 56.7 MB in 2s (33.3 MB/s) +Fetched 56.7 MB in 1s (52.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -936,8 +970,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1309 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27393 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_source.changes dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20200729.e3723e0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -947,7 +1018,7 @@ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' +make[1]: Map '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' wordt binnengegaan dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean @@ -958,7 +1029,7 @@ rm -rf kineticsTools.egg-info rm -f nosetests.xml rm -f bin/ipdSummary -make[1]: Leaving directory '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' +make[1]: Map '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' wordt verlaten dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary @@ -1020,7 +1091,7 @@ aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c kineticsTools/tree_predict.c -o build/temp.linux-arm64-3.9/kineticsTools/tree_predict.o -O3 -shared -std=c99 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/kineticsTools/tree_predict.o -o /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-aarch64-linux-gnu.so -lc debian/rules override_dh_auto_test -make[1]: Entering directory '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' +make[1]: Map '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' wordt binnengegaan cp kineticsTools/ipdSummary.py bin/ipdSummary chmod +x bin/ipdSummary PYTHONPATH=/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg PATH=$PATH:/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/bin dh_auto_test @@ -1042,50 +1113,50 @@ [gw0] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw1] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw2] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] - [gw4] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw3] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] + [gw4] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw5] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] - [gw7] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw6] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] + [gw7] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19] / gw4 [19] / gw5 [19] / gw6 [19] / gw7 [19] scheduling tests via LoadScopeScheduling test/test_ReferenceUtils.py::TestReferenceUtils::test_bam -test/test_loader.py::test_basic [gw0] [ 5%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset -test/test_summarize_modifications.py::TestSummarizeModifications::test_integration -[gw7] [ 10%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration -test/test_ipdModel.py::TestIpdModel::test_refLength -[gw4] [ 15%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength -test/test_ipdModel.py::TestIpdModel::test_snippetFunc -[gw4] [ 21%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc -[gw3] [ 26%] PASSED test/test_loader.py::test_basic -[gw0] [ 31%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset -test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow -[gw0] [ 36%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow +[gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig -[gw1] [ 42%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig +[gw1] [ 15%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli -[gw1] [ 47%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli +[gw1] [ 21%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli +test/test_outputs.py::TestOutputs::test_csv_output +test/test_loader.py::test_basic +test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow +test/test_ipdModel.py::TestIpdModel::test_refLength +[gw5] [ 26%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output +test/test_outputs.py::TestOutputs::test_bigwig +[gw5] [ 31%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig +[gw4] [ 36%] PASSED test/test_loader.py::test_basic test/test_loader.py::test_path -[gw3] [ 52%] PASSED test/test_loader.py::test_path +[gw3] [ 42%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength +test/test_ipdModel.py::TestIpdModel::test_snippetFunc +[gw3] [ 47%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc +test/test_integration.py::TestKineticsTools::test_help +[gw0] [ 52%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow +test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows +[gw0] [ 57%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows +[gw4] [ 63%] PASSED test/test_loader.py::test_path test/test_loader.py::test_path_with_prefixed_chem -[gw3] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem -test/test_loader.py::test_getResourcePathSpec -[gw3] [ 63%] PASSED test/test_loader.py::test_getResourcePathSpec +[gw4] [ 68%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow -[gw4] [ 68%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow -test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows -test/test_integration.py::TestKineticsTools::test_help -test/test_outputs.py::TestOutputs::test_csv_output -[gw5] [ 73%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output -test/test_outputs.py::TestOutputs::test_bigwig -[gw5] [ 78%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig -[gw0] [ 84%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows +[gw3] [ 73%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks -[gw0] [ 89%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks +[gw0] [ 78%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks +test/test_loader.py::test_getResourcePathSpec +[gw4] [ 84%] PASSED test/test_loader.py::test_getResourcePathSpec +test/test_summarize_modifications.py::TestSummarizeModifications::test_integration +[gw6] [ 89%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw2] [ 94%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw2] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k @@ -1104,16 +1175,17 @@ -- Docs: https://docs.pytest.org/en/stable/warnings.html - generated xml file: /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= -1.82s call .pybuild/cpython3_3.9_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help +1.84s call .pybuild/cpython3_3.9_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help +0.01s call .pybuild/cpython3_3.9_kineticstools/build/test/test_loader.py::test_basic -(19 durations < 0.005s hidden. Use -vv to show these durations.) -================== 5 passed, 14 skipped, 41 warnings in 5.60s ================== -make[1]: Leaving directory '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' +(18 durations < 0.005s hidden. Use -vv to show these durations.) +================== 5 passed, 14 skipped, 41 warnings in 5.63s ================== +make[1]: Map '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' wordt verlaten create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install -make[1]: Entering directory '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' +make[1]: Map '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' wordt binnengegaan dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools running install @@ -1139,8 +1211,8 @@ creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/loader.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ -copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ +copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-aarch64-linux-gnu.so -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools @@ -1217,7 +1289,7 @@ ; mv ${libdir}/dist-packages/kineticsTools/resources /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; done rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml -make[1]: Leaving directory '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' +make[1]: Map '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg' wordt verlaten dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild @@ -1244,10 +1316,10 @@ dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'kineticstools' in '../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_all.deb'. -dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_arm64.deb'. -dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20200729.e3723e0+dfsg-1_arm64.deb'. -dpkg-deb: building package 'kineticstools-data' in '../kineticstools-data_0.6.1+git20200729.e3723e0+dfsg-1_all.deb'. +dpkg-deb: pakket 'kineticstools' wordt gebouwd in '../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_all.deb'. +dpkg-deb: pakket 'python3-kineticstools' wordt gebouwd in '../python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_arm64.deb'. +dpkg-deb: pakket 'python3-kineticstools-dbgsym' wordt gebouwd in '../python3-kineticstools-dbgsym_0.6.1+git20200729.e3723e0+dfsg-1_arm64.deb'. +dpkg-deb: pakket 'kineticstools-data' wordt gebouwd in '../kineticstools-data_0.6.1+git20200729.e3723e0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1255,12 +1327,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11294/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11294/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23714 and its subdirectories -I: Current time: Sun Aug 14 01:42:08 -12 2022 -I: pbuilder-time-stamp: 1660484528 +I: removing directory /srv/workspace/pbuilder/11294 and its subdirectories +I: Current time: Mon Jul 12 21:21:22 +14 2021 +I: pbuilder-time-stamp: 1626074482