Diff of the two buildlogs: -- --- b1/build.log 2022-01-10 07:31:02.178411571 +0000 +++ b2/build.log 2022-01-10 09:04:00.869867748 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Feb 12 01:44:42 -12 2023 -I: pbuilder-time-stamp: 1676209482 +I: Current time: Mon Jan 10 21:31:17 +14 2022 +I: pbuilder-time-stamp: 1641799877 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./scrappie_1.4.2-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.Cl4H0bO7/trustedkeys.kbx': General error -gpgv: Signature made Sat Apr 3 07:21:39 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Xce6txZY/trustedkeys.kbx': General error +gpgv: Signature made Sun Apr 4 09:21:39 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -29,135 +29,169 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3457675/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d601665ae6db450c918988cfe7a2d87c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3457675' - PS1='# ' - PS2='> ' + INVOCATION_ID=006329cd9b8f4b5da31bad349549dc22 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4179147 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mU9LpKAVGl/pbuilderrc_TalY --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mU9LpKAVGl/b1 --logfile b1/build.log scrappie_1.4.2-7.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mU9LpKAVGl/pbuilderrc_U66b --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mU9LpKAVGl/b2 --logfile b2/build.log scrappie_1.4.2-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 9 03:46 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/3457675/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jan 10 21:31 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 7 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -276,7 +310,7 @@ Get: 71 http://deb.debian.org/debian bullseye/main amd64 libopenblas-pthread-dev amd64 0.3.13+ds-3 [4477 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libopenblas-dev amd64 0.3.13+ds-3 [44.1 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libsimde-dev all 0.7.2-4 [259 kB] -Fetched 44.9 MB in 0s (95.0 MB/s) +Fetched 44.9 MB in 2s (24.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -591,7 +625,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scrappie_1.4.2-7_source.changes +hostname: Name or service not known +I: Running cd /build/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scrappie_1.4.2-7_source.changes dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-7 dpkg-buildpackage: info: source distribution unstable @@ -845,16 +880,16 @@ dh_auto_build --builddirectory build_${SIMD} && \ cp build_${SIMD}/scrappie build_${SIMD}/scrappie-${SIMD} ; \ done - cd build_avx2 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_avx2/CMakeFiles /build/scrappie-1.4.2/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend -make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= +make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/test_interface.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/depend.internal". @@ -872,24 +907,24 @@ make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c -[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c +[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 @@ -917,57 +952,42 @@ make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' -cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/depend.internal". +make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' +cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/depend.internal". Scanning dependencies of target scrappie_unittest -Scanning dependencies of target scrappie make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build -make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' -make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build -make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' +Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/depend.internal". make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' -[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -[ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o -[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -[ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -[ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -[ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -[ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c +[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c +[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o +[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o +[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o +[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o +Scanning dependencies of target scrappie /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c +make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' +make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build +make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c +[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o +[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_convolution.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_elu.c -[ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong 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warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, @@ -981,36 +1001,51 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' [100%] Built target scrappie +make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' +[100%] Built target scrappie_unittest make[3]: Leaving directory '/build/scrappie-1.4.2/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx2' - cd build_avx && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_avx' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_avx/CMakeFiles /build/scrappie-1.4.2/build_avx//CMakeFiles/progress.marks @@ -1036,25 +1071,25 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx' -[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -[ 23%] Building C object 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-fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c +[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time 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CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 @@ -1082,15 +1117,15 @@ make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx' -cd /build/scrappie-1.4.2/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx /build/scrappie-1.4.2/build_avx /build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/scrappie-1.4.2/build_avx' cd /build/scrappie-1.4.2/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx /build/scrappie-1.4.2/build_avx /build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/depend.internal". +make[4]: Entering directory '/build/scrappie-1.4.2/build_avx' +cd /build/scrappie-1.4.2/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx /build/scrappie-1.4.2/build_avx /build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie_unittest.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_avx/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie_unittest.dir/depend.internal". Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx' +Dependee "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_avx/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/depend.internal". make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx' Scanning dependencies of target scrappie @@ -1098,38 +1133,23 @@ make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx' [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 39%] Building C object 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c +[ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o +[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. 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Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o -[ 73%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c +[ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_convolution.c +[ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o +[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, @@ -1143,39 +1163,54 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # 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CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c -[ 84%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include 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-I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c -[ 97%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit -make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx' -[ 97%] Built target scrappie_unittest -[100%] Linking C executable scrappie +[ 89%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c +[ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c +[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c +[ 97%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm +[100%] Linking C executable scrappie_unittest +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx' [100%] Built target scrappie +make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx' +[100%] Built target scrappie_unittest make[3]: Leaving directory '/build/scrappie-1.4.2/build_avx' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx' - cd build_sse4.1 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse4.1 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_sse4.1/CMakeFiles /build/scrappie-1.4.2/build_sse4.1//CMakeFiles/progress.marks @@ -1187,10 +1222,10 @@ cd /build/scrappie-1.4.2/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' cd /build/scrappie-1.4.2/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1/CMakeFiles/test_interface.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_objects.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_objects.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/test_interface.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_objects.dir/depend.internal". +Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_objects.dir/depend.internal". Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build @@ -1201,26 +1236,26 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o +[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o +[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c -[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface @@ -1250,48 +1285,40 @@ cd /build/scrappie-1.4.2/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' cd /build/scrappie-1.4.2/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie.dir/DependInfo.cmake --color= -Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie.dir/depend.internal". -Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie.dir/depend.internal". 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Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' +[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c +[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o Scanning dependencies of target scrappie make[4]: Leaving directory 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/usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ +[ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, @@ -1305,42 +1332,50 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE 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CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm -make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' -[100%] Built target scrappie_unittest +[100%] Linking C executable scrappie_unittest +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o 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CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' -make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [100%] Built target scrappie_unittest +make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [100%] Built target scrappie make[3]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' - cd build_sse3 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse3 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_sse3/CMakeFiles /build/scrappie-1.4.2/build_sse3//CMakeFiles/progress.marks @@ -1514,9 +1549,9 @@ make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' -cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/test_interface.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' +cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/test_interface.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_objects.dir/depend.internal". @@ -1531,26 +1566,26 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' -[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o -[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c +[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c +[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface @@ -1582,9 +1617,9 @@ cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/depend.internal". +Scanning dependencies of target scrappie_unittest Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie.dir/depend.internal". -Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' @@ -1592,39 +1627,30 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o +[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o +[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o [ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -[ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -[ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c -[ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -[ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c -[ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c +[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o +[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c +[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o +[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c -[ 71%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c +[ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_convolution.c +[ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, @@ -1638,30 +1664,39 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 73%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include 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/build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c +[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c [ 97%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' @@ -1670,7 +1705,7 @@ make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse3' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_sse3/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' - cd build_sse2 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse2 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_sse2/CMakeFiles /build/scrappie-1.4.2/build_sse2//CMakeFiles/progress.marks @@ -1679,8 +1714,8 @@ make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' -make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' cd /build/scrappie-1.4.2/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse2 /build/scrappie-1.4.2/build_sse2 /build/scrappie-1.4.2/build_sse2/CMakeFiles/test_interface.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' cd /build/scrappie-1.4.2/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse2 /build/scrappie-1.4.2/build_sse2 /build/scrappie-1.4.2/build_sse2/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_sse2/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse2/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_sse2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse2/CMakeFiles/test_interface.dir/depend.internal". @@ -1696,25 +1731,25 @@ make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c +[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c +[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c +[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o -[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 @@ -1752,46 +1787,27 @@ Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build -make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' Scanning dependencies of target scrappie +make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' -[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -[ 55%] Building C object 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/build/scrappie-1.4.2/src/test/test_scrappie_convolution.c +[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c +[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o +[ 42%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong 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/usr/include/math.h:27, - from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ -[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat 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/build/scrappie-1.4.2/src/test/test_scrappie_convolution.c +[ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ +[ 63%] 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-D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c +[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 @@ -1909,9 +1944,9 @@ make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' -cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' +cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/depend.internal". @@ -1919,45 +1954,28 @@ Scanning dependencies of target scrappie Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' -make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build -make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build +make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' +make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' -[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o -[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -[ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -[ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -[ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o +[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c +[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o +[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c +[ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security 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-fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c +[ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-1.4.2/src/scrappie_subcommands.c -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ +[ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c +[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, @@ -1971,34 +1989,51 @@ /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 73%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o -[ 76%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o +[ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c +[ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o +[ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c +/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c +[ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. 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-I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/scrappie-1.4.2/src/fast5_interface.c -[ 86%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o +[ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c -[ 89%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -/usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c [ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c [ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c -[ 97%] Linking C executable scrappie -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm -[100%] Linking C executable scrappie_unittest +[ 97%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit +[100%] Linking C executable scrappie +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' +[100%] Built target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [100%] Built target scrappie -[100%] Built target scrappie_unittest make[3]: Leaving directory '/build/scrappie-1.4.2/build_plain' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_plain/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_plain' @@ -2009,10 +2044,10 @@ for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_test --builddirectory build_${SIMD} ; \ done - cd build_avx2 && make -j16 test ARGS\+=-j16 + cd build_avx2 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_avx2' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_avx2 Start 1: unittest Start 2: test_events_call @@ -2029,8 +2064,7 @@ Start 13: test_licence Start 14: test_help Start 15: test_help_events - Start 16: test_help_event_table - 1/19 Test #1: unittest .........................***Exception: Illegal 0.05 sec + 1/19 Test #1: unittest .........................***Exception: Illegal 0.50 sec CUnit - A unit testing framework for C - Version 2.1-3 @@ -2066,40 +2100,41 @@ Test: Simple convolution, antisymmetric filter length 3 ...passed Test: Scrappie convolution, antisymmetric filter length 3 ... + Start 16: test_help_event_table + 2/19 Test #14: test_help ........................ Passed 0.15 sec Start 17: test_help_raw - 2/19 Test #2: test_events_call .................***Exception: Illegal 0.05 sec - + 3/19 Test #15: test_help_events ................. Passed 0.16 sec Start 18: test_help_squiggle - 3/19 Test #3: test_raw_call ....................***Exception: Illegal 0.05 sec - + 4/19 Test #13: test_licence ..................... Passed 0.26 sec Start 19: test_version - 4/19 Test #4: test_rawrgrgr_r94_call ...........***Exception: Illegal 0.06 sec + 5/19 Test #16: test_help_event_table ............ Passed 0.12 sec + 6/19 Test #17: test_help_raw .................... Passed 0.10 sec + 7/19 Test #18: test_help_squiggle ............... Passed 0.08 sec + 8/19 Test #19: test_version ..................... Passed 0.08 sec + 9/19 Test #5: test_rawrgrgr_r941_call ..........***Exception: Illegal 0.83 sec + +10/19 Test #6: test_rawrgrgr_r10_call ...........***Exception: Illegal 0.82 sec - 5/19 Test #5: test_rawrgrgr_r941_call ..........***Exception: Illegal 0.06 sec +11/19 Test #7: test_rawrnnrf_r94_call ...........***Exception: Illegal 0.80 sec - 6/19 Test #6: test_rawrgrgr_r10_call ...........***Exception: Illegal 0.06 sec +12/19 Test #2: test_events_call .................***Exception: Illegal 0.95 sec - 7/19 Test #7: test_rawrnnrf_r94_call ...........***Exception: Illegal 0.05 sec +13/19 Test #3: test_raw_call ....................***Exception: Illegal 0.94 sec - 8/19 Test #8: test_event_table .................***Exception: Illegal 0.04 sec +14/19 Test #4: test_rawrgrgr_r94_call ...........***Exception: Illegal 0.89 sec - 9/19 Test #10: test_seqmappy ....................***Exception: Illegal 0.04 sec +15/19 Test #10: test_seqmappy ....................***Exception: Illegal 0.75 sec -10/19 Test #9: test_mappy .......................***Exception: Illegal 0.04 sec +16/19 Test #9: test_mappy .......................***Exception: Illegal 0.77 sec -11/19 Test #13: test_licence ..................... Passed 0.03 sec -12/19 Test #14: test_help ........................ Passed 0.03 sec -13/19 Test #15: test_help_events ................. Passed 0.02 sec -14/19 Test #16: test_help_event_table ............ Passed 0.04 sec -15/19 Test #18: test_help_squiggle ............... Passed 0.04 sec -16/19 Test #17: test_help_raw .................... Passed 0.04 sec -17/19 Test #19: test_version ..................... Passed 0.04 sec -18/19 Test #12: test_squiggle_r10 ................ Passed 0.19 sec -19/19 Test #11: test_squiggle_r94 ................ Passed 0.22 sec +17/19 Test #8: test_event_table .................***Exception: Illegal 0.81 sec + +18/19 Test #11: test_squiggle_r94 ................ Passed 2.39 sec +19/19 Test #12: test_squiggle_r10 ................ Passed 2.86 sec 47% tests passed, 10 tests failed out of 19 -Total Test time (real) = 0.25 sec +Total Test time (real) = 3.50 sec The following tests FAILED: 1 - unittest (ILLEGAL) @@ -2115,12 +2150,12 @@ Errors while running CTest make[2]: *** [Makefile:152: test] Error 8 make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx2' - rm -fr -- /tmp/dh-xdg-rundir-eicifJ5M -dh_auto_test: error: cd build_avx2 && make -j16 test ARGS\+=-j16 returned exit code 2 - cd build_avx && make -j16 test ARGS\+=-j16 + rm -fr -- /tmp/dh-xdg-rundir-niHn6T59 +dh_auto_test: error: cd build_avx2 && make -j15 test ARGS\+=-j15 returned exit code 2 + cd build_avx && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_avx' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_avx Start 1: unittest Start 2: test_events_call @@ -2137,39 +2172,39 @@ Start 13: test_licence Start 14: test_help Start 15: test_help_events + 1/19 Test #14: test_help ........................ Passed 0.14 sec Start 16: test_help_event_table - 1/19 Test #13: test_licence ..................... Passed 0.21 sec + 2/19 Test #13: test_licence ..................... Passed 0.22 sec Start 17: test_help_raw - 2/19 Test #14: test_help ........................ Passed 0.25 sec + 3/19 Test #15: test_help_events ................. Passed 0.19 sec Start 18: test_help_squiggle - 3/19 Test #15: test_help_events ................. Passed 0.25 sec + 4/19 Test #17: test_help_raw .................... Passed 0.16 sec Start 19: test_version - 4/19 Test #16: test_help_event_table ............ Passed 0.25 sec - 5/19 Test #8: test_event_table ................. Passed 0.59 sec - 6/19 Test #17: test_help_raw .................... Passed 0.26 sec - 7/19 Test #18: test_help_squiggle ............... Passed 0.21 sec - 8/19 Test #19: test_version ..................... Passed 0.20 sec - 9/19 Test #11: test_squiggle_r94 ................ Passed 0.85 sec -10/19 Test #12: test_squiggle_r10 ................ Passed 0.89 sec -11/19 Test #10: test_seqmappy .................... Passed 18.77 sec -12/19 Test #2: test_events_call ................. Passed 28.20 sec -13/19 Test #3: test_raw_call .................... Passed 33.97 sec -14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 36.01 sec -15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 38.97 sec -16/19 Test #9: test_mappy ....................... Passed 42.62 sec -17/19 Test #1: unittest ......................... Passed 43.30 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 44.38 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 66.04 sec + 5/19 Test #16: test_help_event_table ............ Passed 0.32 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.23 sec + 7/19 Test #8: test_event_table ................. Passed 0.65 sec + 8/19 Test #19: test_version ..................... Passed 0.22 sec + 9/19 Test #12: test_squiggle_r10 ................ Passed 2.23 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 2.58 sec +11/19 Test #10: test_seqmappy .................... Passed 49.48 sec +12/19 Test #1: unittest ......................... Passed 101.93 sec +13/19 Test #3: test_raw_call .................... Passed 125.14 sec +14/19 Test #2: test_events_call ................. Passed 127.53 sec +15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 166.26 sec +16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 167.00 sec +17/19 Test #9: test_mappy ....................... Passed 175.58 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 176.88 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 1087.31 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 66.05 sec +Total Test time (real) = 1087.53 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx' - rm -fr -- /tmp/dh-xdg-rundir-ii9qoTcP - cd build_sse4.1 && make -j16 test ARGS\+=-j16 + rm -fr -- /tmp/dh-xdg-rundir-KdbFto23 + cd build_sse4.1 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_sse4.1 Start 1: unittest Start 2: test_events_call @@ -2186,39 +2221,39 @@ Start 13: test_licence Start 14: test_help Start 15: test_help_events + 1/19 Test #13: test_licence ..................... Passed 0.15 sec Start 16: test_help_event_table - 1/19 Test #13: test_licence ..................... Passed 0.14 sec + 2/19 Test #14: test_help ........................ Passed 0.36 sec Start 17: test_help_raw - 2/19 Test #14: test_help ........................ Passed 0.13 sec + 3/19 Test #8: test_event_table ................. Passed 0.60 sec Start 18: test_help_squiggle - 3/19 Test #15: test_help_events ................. Passed 0.17 sec + 4/19 Test #15: test_help_events ................. Passed 0.40 sec Start 19: test_version - 4/19 Test #16: test_help_event_table ............ Passed 0.18 sec - 5/19 Test #17: test_help_raw .................... Passed 0.13 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.15 sec - 7/19 Test #19: test_version ..................... Passed 0.13 sec - 8/19 Test #8: test_event_table ................. Passed 0.53 sec - 9/19 Test #12: test_squiggle_r10 ................ Passed 1.05 sec -10/19 Test #11: test_squiggle_r94 ................ Passed 1.14 sec -11/19 Test #10: test_seqmappy .................... Passed 20.10 sec -12/19 Test #2: test_events_call ................. Passed 32.33 sec -13/19 Test #3: test_raw_call .................... Passed 35.05 sec -14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 41.23 sec -15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 42.89 sec -16/19 Test #9: test_mappy ....................... Passed 44.90 sec -17/19 Test #1: unittest ......................... Passed 46.37 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 48.19 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 70.61 sec + 5/19 Test #16: test_help_event_table ............ Passed 0.33 sec + 6/19 Test #19: test_version ..................... Passed 0.07 sec + 7/19 Test #18: test_help_squiggle ............... Passed 0.12 sec + 8/19 Test #17: test_help_raw .................... Passed 0.18 sec + 9/19 Test #12: test_squiggle_r10 ................ Passed 2.38 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 2.96 sec +11/19 Test #1: unittest ......................... Passed 58.98 sec +12/19 Test #10: test_seqmappy .................... Passed 94.52 sec +13/19 Test #2: test_events_call ................. Passed 110.04 sec +14/19 Test #3: test_raw_call .................... Passed 140.55 sec +15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 141.85 sec +16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 158.13 sec +17/19 Test #6: test_rawrgrgr_r10_call ........... Passed 197.89 sec +18/19 Test #9: test_mappy ....................... Passed 229.14 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 294.70 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 70.66 sec +Total Test time (real) = 294.83 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' - rm -fr -- /tmp/dh-xdg-rundir-8ZYU8xUn - cd build_ssse3 && make -j16 test ARGS\+=-j16 + rm -fr -- /tmp/dh-xdg-rundir-18lvAA3v + cd build_ssse3 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_ssse3 Start 1: unittest Start 2: test_events_call @@ -2235,39 +2270,39 @@ Start 13: test_licence Start 14: test_help Start 15: test_help_events + 1/19 Test #13: test_licence ..................... Passed 0.07 sec Start 16: test_help_event_table - 1/19 Test #13: test_licence ..................... Passed 0.11 sec + 2/19 Test #15: test_help_events ................. Passed 0.08 sec Start 17: test_help_raw - 2/19 Test #14: test_help ........................ Passed 0.13 sec + 3/19 Test #14: test_help ........................ Passed 0.11 sec Start 18: test_help_squiggle - 3/19 Test #15: test_help_events ................. Passed 0.14 sec + 4/19 Test #17: test_help_raw .................... Passed 0.09 sec Start 19: test_version - 4/19 Test #16: test_help_event_table ............ Passed 0.13 sec - 5/19 Test #17: test_help_raw .................... Passed 0.14 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.10 sec - 7/19 Test #19: test_version ..................... Passed 0.14 sec - 8/19 Test #8: test_event_table ................. Passed 0.57 sec - 9/19 Test #11: test_squiggle_r94 ................ Passed 0.77 sec -10/19 Test #12: test_squiggle_r10 ................ Passed 0.89 sec -11/19 Test #10: test_seqmappy .................... Passed 17.75 sec -12/19 Test #2: test_events_call ................. Passed 29.05 sec -13/19 Test #3: test_raw_call .................... Passed 31.96 sec -14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 37.91 sec -15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 41.86 sec -16/19 Test #9: test_mappy ....................... Passed 42.18 sec -17/19 Test #1: unittest ......................... Passed 43.72 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 44.45 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 65.69 sec + 5/19 Test #16: test_help_event_table ............ Passed 0.16 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.13 sec + 7/19 Test #19: test_version ..................... Passed 0.15 sec + 8/19 Test #8: test_event_table ................. Passed 0.40 sec + 9/19 Test #11: test_squiggle_r94 ................ Passed 1.62 sec +10/19 Test #12: test_squiggle_r10 ................ Passed 1.76 sec +11/19 Test #1: unittest ......................... Passed 35.54 sec +12/19 Test #10: test_seqmappy .................... Passed 52.94 sec +13/19 Test #3: test_raw_call .................... Passed 213.38 sec +14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 217.36 sec +15/19 Test #2: test_events_call ................. Passed 217.94 sec +16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 257.01 sec +17/19 Test #9: test_mappy ....................... Passed 331.62 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 567.58 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 1214.65 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 65.70 sec +Total Test time (real) = 1214.75 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' - rm -fr -- /tmp/dh-xdg-rundir-YbKMTZbD - cd build_sse3 && make -j16 test ARGS\+=-j16 + rm -fr -- /tmp/dh-xdg-rundir-K_WNqSEK + cd build_sse3 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_sse3 Start 1: unittest Start 2: test_events_call @@ -2284,39 +2319,39 @@ Start 13: test_licence Start 14: test_help Start 15: test_help_events + 1/19 Test #13: test_licence ..................... Passed 0.14 sec Start 16: test_help_event_table - 1/19 Test #13: test_licence ..................... Passed 0.11 sec + 2/19 Test #14: test_help ........................ Passed 0.14 sec Start 17: test_help_raw - 2/19 Test #14: test_help ........................ Passed 0.12 sec + 3/19 Test #15: test_help_events ................. Passed 0.17 sec Start 18: test_help_squiggle - 3/19 Test #15: test_help_events ................. Passed 0.13 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.17 sec Start 19: test_version - 4/19 Test #16: test_help_event_table ............ Passed 0.19 sec - 5/19 Test #17: test_help_raw .................... Passed 0.16 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.12 sec - 7/19 Test #19: test_version ..................... Passed 0.26 sec - 8/19 Test #8: test_event_table ................. Passed 0.54 sec - 9/19 Test #12: test_squiggle_r10 ................ Passed 0.71 sec -10/19 Test #11: test_squiggle_r94 ................ Passed 0.94 sec -11/19 Test #10: test_seqmappy .................... Passed 20.75 sec -12/19 Test #2: test_events_call ................. Passed 29.38 sec -13/19 Test #3: test_raw_call .................... Passed 30.91 sec -14/19 Test #5: test_rawrgrgr_r941_call .......... Passed 36.86 sec -15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 38.64 sec -16/19 Test #9: test_mappy ....................... Passed 41.95 sec -17/19 Test #1: unittest ......................... Passed 42.82 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 44.22 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 61.87 sec + 5/19 Test #17: test_help_raw .................... Passed 0.18 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.14 sec + 7/19 Test #19: test_version ..................... Passed 0.21 sec + 8/19 Test #8: test_event_table ................. Passed 0.75 sec + 9/19 Test #12: test_squiggle_r10 ................ Passed 2.32 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 2.64 sec +11/19 Test #1: unittest ......................... Passed 88.84 sec +12/19 Test #2: test_events_call ................. Passed 129.83 sec +13/19 Test #10: test_seqmappy .................... Passed 133.31 sec +14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 167.59 sec +15/19 Test #3: test_raw_call .................... Passed 168.13 sec +16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 168.47 sec +17/19 Test #9: test_mappy ....................... Passed 178.68 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 420.89 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 556.39 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 61.89 sec +Total Test time (real) = 556.54 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' - rm -fr -- /tmp/dh-xdg-rundir-zDh3hPI8 - cd build_sse2 && make -j16 test ARGS\+=-j16 + rm -fr -- /tmp/dh-xdg-rundir-rmtx5ttO + cd build_sse2 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_sse2 Start 1: unittest Start 2: test_events_call @@ -2333,40 +2368,40 @@ Start 13: test_licence Start 14: test_help Start 15: test_help_events + 1/19 Test #13: test_licence ..................... Passed 0.06 sec Start 16: test_help_event_table - 1/19 Test #13: test_licence ..................... Passed 0.12 sec + 2/19 Test #14: test_help ........................ Passed 0.09 sec Start 17: test_help_raw - 2/19 Test #14: test_help ........................ Passed 0.12 sec + 3/19 Test #15: test_help_events ................. Passed 0.12 sec Start 18: test_help_squiggle - 3/19 Test #15: test_help_events ................. Passed 0.13 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.12 sec Start 19: test_version - 4/19 Test #16: test_help_event_table ............ Passed 0.16 sec 5/19 Test #17: test_help_raw .................... Passed 0.15 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.13 sec - 7/19 Test #19: test_version ..................... Passed 0.12 sec - 8/19 Test #8: test_event_table ................. Passed 0.54 sec - 9/19 Test #12: test_squiggle_r10 ................ Passed 0.82 sec -10/19 Test #11: test_squiggle_r94 ................ Passed 0.90 sec -11/19 Test #10: test_seqmappy .................... Passed 17.01 sec -12/19 Test #2: test_events_call ................. Passed 27.07 sec -13/19 Test #3: test_raw_call .................... Passed 32.87 sec -14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 36.68 sec -15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 37.95 sec -16/19 Test #9: test_mappy ....................... Passed 41.65 sec -17/19 Test #1: unittest ......................... Passed 42.57 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 45.40 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 64.97 sec + 6/19 Test #19: test_version ..................... Passed 0.07 sec + 7/19 Test #18: test_help_squiggle ............... Passed 0.15 sec + 8/19 Test #8: test_event_table ................. Passed 0.51 sec + 9/19 Test #11: test_squiggle_r94 ................ Passed 1.05 sec +10/19 Test #12: test_squiggle_r10 ................ Passed 1.23 sec +11/19 Test #10: test_seqmappy .................... Passed 34.53 sec +12/19 Test #2: test_events_call ................. Passed 42.64 sec +13/19 Test #3: test_raw_call .................... Passed 62.82 sec +14/19 Test #1: unittest ......................... Passed 65.34 sec +15/19 Test #9: test_mappy ....................... Passed 69.80 sec +16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 80.10 sec +17/19 Test #5: test_rawrgrgr_r941_call .......... Passed 98.58 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 126.26 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 475.90 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 64.98 sec +Total Test time (real) = 475.92 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse2' - rm -fr -- /tmp/dh-xdg-rundir-4e2vqJr3 + rm -fr -- /tmp/dh-xdg-rundir-Qgt0axni dh_auto_test --builddirectory build_plain - cd build_plain && make -j16 test ARGS\+=-j16 + cd build_plain && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_plain' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_plain Start 1: unittest Start 2: test_events_call @@ -2383,35 +2418,35 @@ Start 13: test_licence Start 14: test_help Start 15: test_help_events + 1/19 Test #14: test_help ........................ Passed 0.06 sec Start 16: test_help_event_table - 1/19 Test #13: test_licence ..................... Passed 0.12 sec + 2/19 Test #15: test_help_events ................. Passed 0.10 sec Start 17: test_help_raw - 2/19 Test #14: test_help ........................ Passed 0.13 sec + 3/19 Test #13: test_licence ..................... Passed 0.14 sec Start 18: test_help_squiggle - 3/19 Test #15: test_help_events ................. Passed 0.12 sec + 4/19 Test #16: test_help_event_table ............ Passed 0.12 sec Start 19: test_version - 4/19 Test #16: test_help_event_table ............ Passed 0.18 sec - 5/19 Test #17: test_help_raw .................... Passed 0.16 sec - 6/19 Test #18: test_help_squiggle ............... Passed 0.15 sec - 7/19 Test #19: test_version ..................... Passed 0.18 sec - 8/19 Test #8: test_event_table ................. Passed 0.45 sec - 9/19 Test #11: test_squiggle_r94 ................ Passed 0.93 sec -10/19 Test #12: test_squiggle_r10 ................ Passed 0.99 sec -11/19 Test #10: test_seqmappy .................... Passed 14.86 sec -12/19 Test #2: test_events_call ................. Passed 26.71 sec -13/19 Test #3: test_raw_call .................... Passed 33.56 sec -14/19 Test #5: test_rawrgrgr_r941_call .......... Passed 38.16 sec -15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 40.49 sec -16/19 Test #9: test_mappy ....................... Passed 42.20 sec -17/19 Test #1: unittest ......................... Passed 42.22 sec -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 44.05 sec -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 68.77 sec + 5/19 Test #17: test_help_raw .................... Passed 0.08 sec + 6/19 Test #18: test_help_squiggle ............... Passed 0.07 sec + 7/19 Test #19: test_version ..................... Passed 0.08 sec + 8/19 Test #8: test_event_table ................. Passed 0.49 sec + 9/19 Test #12: test_squiggle_r10 ................ Passed 0.96 sec +10/19 Test #11: test_squiggle_r94 ................ Passed 1.06 sec +11/19 Test #10: test_seqmappy .................... Passed 24.59 sec +12/19 Test #1: unittest ......................... Passed 65.36 sec +13/19 Test #3: test_raw_call .................... Passed 77.82 sec +14/19 Test #9: test_mappy ....................... Passed 78.74 sec +15/19 Test #2: test_events_call ................. Passed 80.02 sec +16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 129.63 sec +17/19 Test #6: test_rawrgrgr_r10_call ........... Passed 135.71 sec +18/19 Test #5: test_rawrgrgr_r941_call .......... Passed 183.07 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 432.36 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 68.78 sec +Total Test time (real) = 432.59 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_plain' - rm -fr -- /tmp/dh-xdg-rundir-d843dtht + rm -fr -- /tmp/dh-xdg-rundir-SvKBkNea make[1]: Leaving directory '/build/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -2428,7 +2463,7 @@ for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done - cd build_avx2 && make -j16 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx2 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2441,7 +2476,7 @@ -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx2' - cd build_avx && make -j16 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_avx' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2454,7 +2489,7 @@ -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx' - cd build_sse4.1 && make -j16 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse4.1 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2467,7 +2502,7 @@ -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' - cd build_ssse3 && make -j16 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_ssse3 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2480,7 +2515,7 @@ -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' - cd build_sse3 && make -j16 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse3 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2493,7 +2528,7 @@ -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' - cd build_sse2 && make -j16 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse2 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2618,8 +2653,8 @@ cd debian/.debhelper/scrappie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake - dpkg-deb --root-owner-group --build debian/scrappie .. dpkg-deb --root-owner-group --build debian/.debhelper/scrappie/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/scrappie .. dpkg-deb: building package 'scrappie-dbgsym' in '../scrappie-dbgsym_1.4.2-7_amd64.deb'. dpkg-deb: building package 'scrappie' in '../scrappie_1.4.2-7_amd64.deb'. dpkg-genbuildinfo --build=binary @@ -2629,12 +2664,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3457675 and its subdirectories -I: Current time: Sun Feb 12 01:54:05 -12 2023 -I: pbuilder-time-stamp: 1676210045 +I: removing directory /srv/workspace/pbuilder/4179147 and its subdirectories +I: Current time: Mon Jan 10 23:03:43 +14 2022 +I: pbuilder-time-stamp: 1641805423