Diff of the two buildlogs: -- --- b1/build.log 2024-07-08 16:49:39.767428440 +0000 +++ b2/build.log 2024-07-08 16:52:58.170992576 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Aug 10 11:11:57 -12 2025 -I: pbuilder-time-stamp: 1754867517 +I: Current time: Tue Jul 9 06:49:42 +14 2024 +I: pbuilder-time-stamp: 1720457382 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./libgo-perl_0.15-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.taQG0hFd/trustedkeys.kbx': General error -gpgv: Signature made Sat Jan 9 03:39:52 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.JoRK7pno/trustedkeys.kbx': General error +gpgv: Signature made Sun Jan 10 05:39:52 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -36,135 +36,166 @@ dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/830493/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 9 06:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=42 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=20 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d59fc5a067ed4a85947fdbdb6a675eaf' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='830493' - PS1='# ' - PS2='> ' + INVOCATION_ID=91926fabe6764cdbae7b69e91eaefaeb + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=956426 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ox2xylmq/pbuilderrc_tTXg --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ox2xylmq/b1 --logfile b1/build.log libgo-perl_0.15-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ox2xylmq/pbuilderrc_POwD --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ox2xylmq/b2 --logfile b2/build.log libgo-perl_0.15-9.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-22-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.94-1 (2024-06-21) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Mar 27 2024 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Mar 27 2024 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Mar 27 2024 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Mar 27 2024 more - -rwsr-xr-x 1 root root 55528 Mar 27 2024 mount - -rwxr-xr-x 1 root root 18664 Mar 27 2024 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 9 03:46 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Mar 27 2024 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Jan 19 2024 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Mar 27 2024 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Mar 27 2024 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/830493/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Mar 29 00:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Mar 29 00:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Mar 29 00:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Mar 29 00:09 more + -rwsr-xr-x 1 root root 55528 Mar 29 00:09 mount + -rwxr-xr-x 1 root root 18664 Mar 29 00:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Jul 9 06:49 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Mar 29 00:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Jan 20 23:59 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Mar 29 00:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Mar 29 00:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +319,7 @@ Get: 72 http://deb.debian.org/debian bullseye/main amd64 libxml-writer-perl all 0.900-1 [29.9 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 rename all 1.13-1 [18.0 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 xsltproc amd64 1.1.34-4+deb11u1 [124 kB] -Fetched 25.4 MB in 1s (19.1 MB/s) +Fetched 25.4 MB in 1s (20.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) @@ -617,7 +648,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgo-perl_0.15-9_source.changes +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgo-perl_0.15-9_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-9 dpkg-buildpackage: info: source distribution unstable @@ -639,176 +674,176 @@ Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build - make -j42 + make -j20 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' -cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm -cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm -cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm -cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm +cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm +cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm +cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm +cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm cp GO/Basic.pm blib/lib/GO/Basic.pm -cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm +cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm -cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm -cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm -cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm -cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm -cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm -cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm -cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm +cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm -cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm -cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm -cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm -cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm -cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm -cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm -cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm -cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm -cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm +cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm -cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm -cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm -cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm -cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm -cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm -cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm -cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm +cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm +cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm -cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm +cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm +cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm +cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm +cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm +cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm +cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm +cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm -cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm +cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm +cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm +cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm +cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm -cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm +cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm +cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm +cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm +cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm +cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm +cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm +cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm +cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm +cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm +cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm -cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm -cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm +cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm +cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm +cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm -cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm -cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm -cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm -cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm +cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm +cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm +cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm +cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm +cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm +cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm +cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm -cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm -cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm -cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm -cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm -cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm +cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm -cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm -cp GO/Parser.pm blib/lib/GO/Parser.pm -cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm -cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm -cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm +cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm -cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm +cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm -cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm -cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm -cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm -cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm -cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm +cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm -cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm -cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm -cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm -cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm -cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm -cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm +cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm -cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm +cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm +cp GO/Parser.pm blib/lib/GO/Parser.pm +cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm +cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm +cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm +cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm +cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm +cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm -cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm +cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm +cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl -cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl -cp go-perl.pod blib/lib/go-perl.pod -cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl -cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm -cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl -cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl -cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl -cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl -cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl -cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm +cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl +cp go-perl.pod blib/lib/go-perl.pod +cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl +cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl +cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl +cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm +cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl +cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl +cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm -cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm -cp GO/Utils.pm blib/lib/GO/Utils.pm +cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl +cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp scripts/go-apply-xslt blib/script/go-apply-xslt -cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl -cp scripts/go-export-graph.pl blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt +cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl +cp scripts/go-export-graph.pl blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl -cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl +cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl -cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl +cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml -cp scripts/go2error_report blib/script/go2error_report -cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml +cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report +cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo -cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo +cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl -cp scripts/go2pathlist blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl +cp scripts/go2pathlist blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog -cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog +cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf cp scripts/go2rdfxml blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml cp scripts/go2summary blib/script/go2summary -cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary +cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl -cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl -cp scripts/go2xml blib/script/go2xml +cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html -cp scripts/map2slim blib/script/map2slim +cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml +cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_auto_test - make -j42 test TEST_VERBOSE=1 + make -j20 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:01 2024 +# Current time GMT: Mon Jul 8 16:52:01 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -820,8 +855,8 @@ t/t020paths.t ............ 1..7 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:02 2024 +# Current time GMT: Mon Jul 8 16:52:02 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -834,8 +869,8 @@ t/t030detecterror.t ...... 1..4 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:02 2024 +# Current time GMT: Mon Jul 8 16:52:02 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -877,8 +912,8 @@ t/t050oboformat.t ........ 1..6 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:02 2024 +# Current time GMT: Mon Jul 8 16:52:02 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -887,224 +922,224 @@ ROOT: molecular_function ok 3 ok 4 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0003678|GO:0004386|is_a -EDGE|GO:0003678|GO:0003677|is_a -EDGE|GO:0003677|GO:0003676|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0003680|GO:0003677|is_a -EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0003704|GO:0003702|is_a -EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0003904|GO:0003913|is_a -EDGE|GO:0003904|GO:0003824|is_a -EDGE|GO:0003716|GO:0003715|is_a -EDGE|GO:0003826|GO:0003824|is_a -EDGE|GO:0003689|GO:0003687|is_a -EDGE|GO:0003832|GO:0003824|is_a -EDGE|GO:0003718|GO:0003715|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008301|GO:0003677|is_a -EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0005624|GO:0000267|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0000217|GO:0003677|is_a +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0005934|GO:0000134|is_a +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0008148|GO:0003711|is_a +EDGE|GO:0008159|GO:0003711|is_a +EDGE|GO:0003711|GO:0003700|is_a +EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a -EDGE|GO:0048148|GO:0042220|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003707|GO:0003706|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0003832|GO:0003824|is_a +EDGE|GO:0003710|GO:0003700|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0005626|GO:0000267|is_a +EDGE|GO:0005624|GO:0000267|is_a +EDGE|GO:0000267|GO:0005623|part_of +EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0003680|GO:0003677|is_a +EDGE|GO:0000150|GO:0003690|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a 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-EDGE|GO:0008464|GO:0003824|is_a +EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0003696|GO:0003677|is_a +EDGE|GO:0003697|GO:0003677|is_a +EDGE|GO:0003686|GO:0003685|is_a +EDGE|GO:0003685|GO:0003677|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0003694|GO:0003677|is_a total parent rels:118 total (both ways):218 ok 5 @@ -1113,118 +1148,118 @@ t/t060oboformat2.t ....... 1..36 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:03 2024 +# Current time GMT: Mon Jul 8 16:52:03 2024 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 -ROOT: Part of -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root +ROOT: Part of TERMS: 29 -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +SYNS:FAKE:0001|fake synonym|class I PI3K +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:GO:ai -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0042630|GO:0009414|is_a -SYNS:class I PI3K|FAKE:0001|fake synonym -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:curators -EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a +DEFXREFS:GO:curators +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008150|root|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0042595|GO:0007631|is_a +DEFXREFS:GO:ai +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1248,112 +1283,112 @@ ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: root ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase -ROOT: root +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:curators +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:ai -EDGE|GO:0007629|GO:0008344|is_a +DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a +SYNS:drinking|eating DEFXREFS:GO:mah +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0048265|is_a -EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a +DEFXREFS:GO:ai +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a SYNS:fake synonym|FAKE:0001|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a -DEFXREFS:GO:curators +EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1377,112 +1412,112 @@ ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase -ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root +ROOT: Part of TERMS: 29 +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:ai -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +SYNS:class I PI3K|fake synonym|FAKE:0001 +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0048149|GO:0030534|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -SYNS:class I PI3K|fake synonym|FAKE:0001 -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008150|root|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:GO:ai +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0042220|is_a -EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a SYNS:drinking|eating DEFXREFS:GO:mah -EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1506,8 +1541,8 @@ t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:04 2024 +# Current time GMT: Mon Jul 8 16:52:04 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1899,8 +1934,8 @@ t/t080gofmt2.t ........... 1..3 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:06 2024 +# Current time GMT: Mon Jul 8 16:52:06 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1954,8 +1989,8 @@ t/t100roundtrip.t ........ 1..2 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:32 2025 -# Current time GMT: Sun Aug 10 23:12:32 2025 +# Current time local: Tue Jul 9 06:52:06 2024 +# Current time GMT: Mon Jul 8 16:52:06 2024 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml @@ -1983,8 +2018,8 @@ t/t110basic.t ............ 1..4 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:33 2025 -# Current time GMT: Sun Aug 10 23:12:33 2025 +# Current time local: Tue Jul 9 06:52:10 2024 +# Current time GMT: Mon Jul 8 16:52:10 2024 # Using Test.pm version 1.31 GO:0016604 GO:0016604 @@ -2002,8 +2037,8 @@ t/t130relations.t ........ 1..7 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:33 2025 -# Current time GMT: Sun Aug 10 23:12:33 2025 +# Current time local: Tue Jul 9 06:52:11 2024 +# Current time GMT: Mon Jul 8 16:52:11 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2017,8 +2052,8 @@ t/t140subgraph.t ......... 1..1 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:33 2025 -# Current time GMT: Sun Aug 10 23:12:33 2025 +# Current time local: Tue Jul 9 06:52:12 2024 +# Current time GMT: Mon Jul 8 16:52:12 2024 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 @@ -2030,8 +2065,8 @@ t/t150xref.t ............. 1..2 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:33 2025 -# Current time GMT: Sun Aug 10 23:12:33 2025 +# Current time local: Tue Jul 9 06:52:13 2024 +# Current time GMT: Mon Jul 8 16:52:13 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2039,8 +2074,8 @@ t/t160logicaldef.t ....... 1..5 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:33 2025 -# Current time GMT: Sun Aug 10 23:12:33 2025 +# Current time local: Tue Jul 9 06:52:14 2024 +# Current time GMT: Mon Jul 8 16:52:14 2024 # Using Test.pm version 1.31 ok 1 ns: biological_process @@ -2056,8 +2091,8 @@ t/t170chadoxml.t ......... 1..9 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:33 2025 -# Current time GMT: Sun Aug 10 23:12:33 2025 +# Current time local: Tue Jul 9 06:52:15 2024 +# Current time GMT: Mon Jul 8 16:52:15 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2072,8 +2107,8 @@ t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:33 2025 -# Current time GMT: Sun Aug 10 23:12:33 2025 +# Current time local: Tue Jul 9 06:52:16 2024 +# Current time GMT: Mon Jul 8 16:52:16 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2088,8 +2123,8 @@ t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:16 2024 +# Current time GMT: Mon Jul 8 16:52:16 2024 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 @@ -2101,8 +2136,8 @@ t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:18 2024 +# Current time GMT: Mon Jul 8 16:52:18 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2110,8 +2145,8 @@ t/t210cache.t ............ 1..6 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:18 2024 +# Current time GMT: Mon Jul 8 16:52:18 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2123,8 +2158,8 @@ t/t220xref_esc.t ......... 1..6 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:19 2024 +# Current time GMT: Mon Jul 8 16:52:19 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2138,8 +2173,8 @@ t/t230term_expression.t .. 1..1 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:20 2024 +# Current time GMT: Mon Jul 8 16:52:20 2024 # Using Test.pm version 1.31 @@ -2234,8 +2269,8 @@ t/t240ga2obj.t ........... 1..3 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:21 2024 +# Current time GMT: Mon Jul 8 16:52:21 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2244,8 +2279,8 @@ t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:21 2024 +# Current time GMT: Mon Jul 8 16:52:21 2024 # Using Test.pm version 1.31 @@ -2297,8 +2332,8 @@ t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:23 2024 +# Current time GMT: Mon Jul 8 16:52:23 2024 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ @@ -2346,8 +2381,8 @@ t/t290disjoint.t ......... 1..2 # Running under perl version 5.032001 for linux -# Current time local: Sun Aug 10 11:12:34 2025 -# Current time GMT: Sun Aug 10 23:12:34 2025 +# Current time local: Tue Jul 9 06:52:24 2024 +# Current time GMT: Mon Jul 8 16:52:24 2024 # Using Test.pm version 1.31 ok 1 GO:0009987 @@ -2355,227 +2390,227 @@ ok 2 ok All tests successful. -Files=24, Tests=140, 3 wallclock secs ( 0.12 usr 0.04 sys + 2.64 cusr 0.34 csys = 3.14 CPU) +Files=24, Tests=140, 23 wallclock secs ( 0.21 usr 0.12 sys + 8.37 cusr 0.85 csys = 9.55 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - make -j42 install DESTDIR=/build/reproducible-path/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j20 install DESTDIR=/build/reproducible-path/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' @@ -2604,12 +2639,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/956426/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/830493 and its subdirectories -I: Current time: Sun Aug 10 11:12:39 -12 2025 -I: pbuilder-time-stamp: 1754867559 +I: removing directory /srv/workspace/pbuilder/956426 and its subdirectories +I: Current time: Tue Jul 9 06:52:57 +14 2024 +I: pbuilder-time-stamp: 1720457577