Diff of the two buildlogs: -- --- b1/build.log 2021-12-27 15:39:32.381194098 +0000 +++ b2/build.log 2021-12-27 15:42:19.559969601 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 29 09:57:23 -12 2023 -I: pbuilder-time-stamp: 1675029443 +I: Current time: Tue Dec 28 05:39:33 +14 2021 +I: pbuilder-time-stamp: 1640619573 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./hinge_0.5.0-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.nEiiffqb/trustedkeys.kbx': General error -gpgv: Signature made Thu Mar 19 05:26:36 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.oIntJ27s/trustedkeys.kbx': General error +gpgv: Signature made Fri Mar 20 07:26:36 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -33,135 +33,169 @@ dpkg-source: info: applying spdlog-1.5.0.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/341610/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/641354/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/641354/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/641354/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4caf17417786420d9c6620d923ee0496' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='341610' - PS1='# ' - PS2='> ' + INVOCATION_ID=6d1192de1b3c48378b056bf09afa51c3 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=641354 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.KoKOAwD13J/pbuilderrc_IDex --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.KoKOAwD13J/b1 --logfile b1/build.log hinge_0.5.0-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.KoKOAwD13J/pbuilderrc_74zm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.KoKOAwD13J/b2 --logfile b2/build.log hinge_0.5.0-6.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 23 03:47 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/341610/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 28 05:39 sh -> bash + lrwxrwxrwx 1 root root 4 Dec 21 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/641354/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -383,7 +417,7 @@ Get: 150 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 python3-pbcore all 1.7.1+git20200430.a127b1e+dfsg-1 [2881 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 python3-ujson amd64 4.0.2-1 [21.8 kB] -Fetched 108 MB in 4s (26.7 MB/s) +Fetched 108 MB in 3s (41.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -1012,7 +1046,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/hinge-0.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hinge_0.5.0-6_source.changes +hostname: Name or service not known +I: Running cd /build/hinge-0.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hinge_0.5.0-6_source.changes dpkg-buildpackage: info: source package hinge dpkg-buildpackage: info: source version 0.5.0-6 dpkg-buildpackage: info: source distribution unstable @@ -1056,95 +1091,94 @@ -- Build files have been written to: /build/hinge-0.5.0/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/hinge-0.5.0 -B/build/hinge-0.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hinge-0.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/hinge-0.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend +make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend +make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend +make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend +make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend +make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/depend.internal". -Scanning dependencies of target man +make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= -make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build -make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/depend.internal". -make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/depend.internal". make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/depend.internal". Scanning dependencies of target ini +Scanning dependencies of target DW_banded +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/depend.internal". Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/depend.internal". Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/depend.internal". +Scanning dependencies of target man make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build -Scanning dependencies of target DW_banded -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 3%] Generating hinge.1 -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin && /usr/bin/pandoc --from markdown --to man -s /build/hinge-0.5.0/src/hinge.1.md -o hinge.1 -make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/depend.internal". Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/depend.internal". Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/depend.internal". -[ 6%] Building C object bin/lib/CMakeFiles/ini.dir/ini.c.o -Scanning dependencies of target PAF -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/ini.dir/ini.c.o -c /build/hinge-0.5.0/src/lib/ini.c -[ 10%] Building CXX object bin/lib/CMakeFiles/ini.dir/INIReader.cpp.o +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/depend.internal". make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build +Scanning dependencies of target DB Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/depend.internal". -[ 13%] Building C object bin/lib/CMakeFiles/DW_banded.dir/DW_banded.c.o -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/c++ -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/ini.dir/INIReader.cpp.o -c /build/hinge-0.5.0/src/lib/INIReader.cpp Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/depend.internal". -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' Scanning dependencies of target kmer_lookup -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DW_banded.dir/DW_banded.c.o -c /build/hinge-0.5.0/src/lib/DW_banded.c +Scanning dependencies of target PAF make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -Scanning dependencies of target DB -[ 17%] Building C object bin/lib/CMakeFiles/PAF.dir/paf.c.o make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/PAF.dir/paf.c.o -c /build/hinge-0.5.0/src/lib/paf.c -[ 20%] Building C object bin/lib/CMakeFiles/DB.dir/QV.c.o -[ 24%] Building C object bin/lib/CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/QV.c.o -c /build/hinge-0.5.0/src/lib/QV.c make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -c /build/hinge-0.5.0/src/lib/kmer_lookup.c -[ 27%] Building C object bin/lib/CMakeFiles/DB.dir/DB.c.o -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/DB.c.o -c /build/hinge-0.5.0/src/lib/DB.c -[ 27%] Built target man +make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build +make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build +make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build Scanning dependencies of target LA +make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build +make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 31%] Building C object bin/lib/CMakeFiles/LA.dir/align.c.o +[ 3%] Building C object bin/lib/CMakeFiles/ini.dir/ini.c.o +[ 6%] Generating hinge.1 +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/ini.dir/ini.c.o -c /build/hinge-0.5.0/src/lib/ini.c +[ 10%] Building C object bin/lib/CMakeFiles/PAF.dir/paf.c.o +[ 13%] Building C object bin/lib/CMakeFiles/DB.dir/QV.c.o +[ 20%] Building C object bin/lib/CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o +[ 20%] Building C object bin/lib/CMakeFiles/DB.dir/DB.c.o +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin && /usr/bin/pandoc --from markdown --to man -s /build/hinge-0.5.0/src/hinge.1.md -o hinge.1 +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/PAF.dir/paf.c.o -c /build/hinge-0.5.0/src/lib/paf.c +[ 24%] Building C object bin/lib/CMakeFiles/LA.dir/align.c.o +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/DB.c.o -c /build/hinge-0.5.0/src/lib/DB.c +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -c /build/hinge-0.5.0/src/lib/kmer_lookup.c cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/LA.dir/align.c.o -c /build/hinge-0.5.0/src/lib/align.c +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/QV.c.o -c /build/hinge-0.5.0/src/lib/QV.c +[ 27%] Building C object bin/lib/CMakeFiles/DW_banded.dir/DW_banded.c.o +[ 31%] Building CXX object bin/lib/CMakeFiles/ini.dir/INIReader.cpp.o +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/c++ -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/ini.dir/INIReader.cpp.o -c /build/hinge-0.5.0/src/lib/INIReader.cpp +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DW_banded.dir/DW_banded.c.o -c /build/hinge-0.5.0/src/lib/DW_banded.c +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' /build/hinge-0.5.0/src/lib/DB.c: In function 'Load_QVs': /build/hinge-0.5.0/src/lib/DB.c:916:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 916 | fscanf(istub,DB_NFILE,&nfiles); @@ -1155,6 +1189,9 @@ /build/hinge-0.5.0/src/lib/DB.c:925:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 925 | { fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 31%] Built target man +[ 34%] Linking C static library libPAF.a +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/PAF.dir/cmake_clean_target.cmake /build/hinge-0.5.0/src/lib/kmer_lookup.c: In function 'find_best_aln_range': /build/hinge-0.5.0/src/lib/kmer_lookup.c:347:14: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 347 | q_coor = calloc( km_ptr->count, sizeof(seq_coor_t) ); @@ -1170,19 +1207,17 @@ /usr/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ -[ 34%] Linking C static library libPAF.a -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/PAF.dir/cmake_clean_target.cmake -[ 37%] Linking C static library libDW_banded.a cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/PAF.dir/link.txt --verbose=1 -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DW_banded.dir/cmake_clean_target.cmake /usr/bin/ar qc libPAF.a CMakeFiles/PAF.dir/paf.c.o -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DW_banded.dir/link.txt --verbose=1 /usr/bin/ranlib libPAF.a +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +[ 34%] Built target PAF +[ 37%] Linking C static library libDW_banded.a +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DW_banded.dir/cmake_clean_target.cmake +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DW_banded.dir/link.txt --verbose=1 /usr/bin/ar qc libDW_banded.a CMakeFiles/DW_banded.dir/DW_banded.c.o /usr/bin/ranlib libDW_banded.a make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 37%] Built target PAF [ 37%] Built target DW_banded [ 41%] Linking C static library libkmer_lookup.a cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/kmer_lookup.dir/cmake_clean_target.cmake @@ -1202,20 +1237,20 @@ make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' [ 44%] Building C object bin/lib/CMakeFiles/falcon.dir/falcon.c.o cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/falcon.dir/falcon.c.o -c /build/hinge-0.5.0/src/lib/falcon.c -[ 48%] Linking C static library libDB.a -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DB.dir/cmake_clean_target.cmake -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DB.dir/link.txt --verbose=1 -/usr/bin/ar qc libDB.a CMakeFiles/DB.dir/DB.c.o CMakeFiles/DB.dir/QV.c.o -/usr/bin/ranlib libDB.a -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 48%] Built target DB -[ 51%] Linking C static library libfalcon.a +[ 48%] Linking C static library libfalcon.a cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/falcon.dir/cmake_clean_target.cmake cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/falcon.dir/link.txt --verbose=1 /usr/bin/ar qc libfalcon.a CMakeFiles/falcon.dir/falcon.c.o /usr/bin/ranlib libfalcon.a make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 51%] Built target falcon +[ 48%] Built target falcon +[ 51%] Linking C static library libDB.a +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DB.dir/cmake_clean_target.cmake +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DB.dir/link.txt --verbose=1 +/usr/bin/ar qc libDB.a CMakeFiles/DB.dir/DB.c.o CMakeFiles/DB.dir/QV.c.o +/usr/bin/ranlib libDB.a +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +[ 51%] Built target DB [ 55%] Linking CXX static library libini.a cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/ini.dir/cmake_clean_target.cmake cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/ini.dir/link.txt --verbose=1 @@ -1267,58 +1302,58 @@ make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend -make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/filter /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= +make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/maximal /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend +make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= -make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/depend.internal". make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/layout /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/depend.internal". +Scanning dependencies of target get_maximal_reads +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/depend.internal". Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/depend.internal". -Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/depend.internal". +Scanning dependencies of target Reads_filter +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/depend.internal". +Scanning dependencies of target draft_assembly Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/depend.internal". Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/depend.internal". +Dependee "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/depend.internal". +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +[ 68%] Building CXX object bin/maximal/CMakeFiles/get_maximal_reads.dir/maximal.cpp.o +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -c /build/hinge-0.5.0/src/maximal/maximal.cpp Scanning dependencies of target consensus make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build +make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -Scanning dependencies of target Reads_filter -Scanning dependencies of target get_maximal_reads -Scanning dependencies of target draft_assembly -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build +Scanning dependencies of target hinging make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build -[ 68%] Building CXX object bin/consensus/CMakeFiles/consensus.dir/consensus.cpp.o +make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build +make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/consensus.dir/consensus.cpp.o -c /build/hinge-0.5.0/src/consensus/consensus.cpp -[ 72%] Building CXX object bin/maximal/CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -[ 75%] Building CXX object bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o +[ 72%] Building CXX object bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/Reads_filter.dir/filter.cpp.o -c /build/hinge-0.5.0/src/filter/filter.cpp -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -c /build/hinge-0.5.0/src/maximal/maximal.cpp -Scanning dependencies of target hinging -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build -[ 79%] Building CXX object bin/consensus/CMakeFiles/draft_assembly.dir/draft.cpp.o +[ 75%] Building CXX object bin/consensus/CMakeFiles/draft_assembly.dir/draft.cpp.o cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/draft_assembly.dir/draft.cpp.o -c /build/hinge-0.5.0/src/consensus/draft.cpp -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +[ 79%] Building CXX object bin/consensus/CMakeFiles/consensus.dir/consensus.cpp.o +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/consensus.dir/consensus.cpp.o -c /build/hinge-0.5.0/src/consensus/consensus.cpp [ 82%] Building CXX object bin/layout/CMakeFiles/hinging.dir/hinging.cpp.o cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DSPDLOG_FMT_EXTERNAL -I/build/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/hinging.dir/hinging.cpp.o -c /build/hinge-0.5.0/src/layout/hinging.cpp [ 86%] Linking CXX executable consensus @@ -1331,16 +1366,16 @@ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -o get_maximal_reads -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' [ 89%] Built target get_maximal_reads -[ 93%] Linking CXX executable Reads_filter -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/Reads_filter.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Reads_filter.dir/filter.cpp.o -o Reads_filter -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 93%] Built target Reads_filter -[ 96%] Linking CXX executable draft_assembly +[ 93%] Linking CXX executable draft_assembly cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/draft_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/draft_assembly.dir/draft.cpp.o -o draft_assembly -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libfalcon.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 96%] Built target draft_assembly +[ 93%] Built target draft_assembly +[ 96%] Linking CXX executable Reads_filter +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/Reads_filter.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Reads_filter.dir/filter.cpp.o -o Reads_filter -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +[ 96%] Built target Reads_filter [100%] Linking CXX executable hinging cd /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinging.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hinging.dir/hinging.cpp.o -o hinging -lfmt ../lib/libLAInterface.a ../lib/libini.a /usr/lib/x86_64-linux-gnu/libboost_graph.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz /usr/lib/x86_64-linux-gnu/libboost_regex.a @@ -1353,138 +1388,138 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/hinge-0.5.0/debian/hinge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/hinge-0.5.0/debian/hinge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/hinge-0.5.0 -B/build/hinge-0.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hinge-0.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/hinge-0.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend +make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend +make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend +make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend +make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend +make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend +make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= -make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake --color= -make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/CMakeFiles/man.dir/build'. -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build +make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/ini.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build +make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DW_banded.dir/build'. -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LA.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'bin/lib/CMakeFiles/PAF.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DB.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build -[ 3%] Built target man +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'bin/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LA.dir/build'. +make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DW_banded.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/lib/CMakeFiles/PAF.dir/build'. +make[3]: Nothing to be done for 'bin/lib/CMakeFiles/kmer_lookup.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 13%] Built target ini -[ 20%] Built target DW_banded -[ 27%] Built target LA -make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend -[ 37%] Built target DB +[ 17%] Built target ini +[ 17%] Built target PAF +[ 24%] Built target DW_banded +[ 31%] Built target kmer_lookup +make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend +[ 37%] Built target LA +[ 48%] Built target DB make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= -[ 44%] Built target PAF +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= +[ 51%] Built target man make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build +make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/lib/CMakeFiles/kmer_lookup.dir/build'. +make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LAInterface.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LAInterface.dir/build'. +make[3]: Nothing to be done for 'bin/lib/CMakeFiles/falcon.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 51%] Built target kmer_lookup -make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend [ 58%] Built target LAInterface -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend +[ 65%] Built target falcon +make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend +make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/filter /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= -make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend +make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/maximal /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= -make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/layout /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= +make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/build make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/lib/CMakeFiles/falcon.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/filter/CMakeFiles/Reads_filter.dir/build'. -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/maximal/CMakeFiles/get_maximal_reads.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build +make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/layout/CMakeFiles/hinging.dir/build'. +make[3]: Nothing to be done for 'bin/filter/CMakeFiles/Reads_filter.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 65%] Built target falcon -make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend -[ 72%] Built target Reads_filter -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= -make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend -[ 79%] Built target get_maximal_reads -[ 86%] Built target hinging -make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -cd /build/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-0.5.0 /build/hinge-0.5.0/src/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/consensus.dir/build'. -make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'bin/layout/CMakeFiles/hinging.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/draft_assembly.dir/build'. make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' -[ 93%] Built target consensus -[100%] Built target draft_assembly +make[3]: Entering directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/consensus.dir/build'. +make[3]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' +[ 72%] Built target hinging +[ 86%] Built target draft_assembly +[ 86%] Built target get_maximal_reads +[ 93%] Built target Reads_filter +[100%] Built target consensus make[2]: Leaving directory '/build/hinge-0.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hinge-0.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -1583,8 +1618,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'hinge-dbgsym' in '../hinge-dbgsym_0.5.0-6_amd64.deb'. dpkg-deb: building package 'hinge' in '../hinge_0.5.0-6_amd64.deb'. +dpkg-deb: building package 'hinge-dbgsym' in '../hinge-dbgsym_0.5.0-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hinge_0.5.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1592,12 +1627,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/641354/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/641354/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/341610 and its subdirectories -I: Current time: Sun Jan 29 10:02:41 -12 2023 -I: pbuilder-time-stamp: 1675029761 +I: removing directory /srv/workspace/pbuilder/641354 and its subdirectories +I: Current time: Tue Dec 28 05:42:19 +14 2021 +I: pbuilder-time-stamp: 1640619739