Diff of the two buildlogs: -- --- b1/build.log 2023-04-18 23:07:16.317211232 +0000 +++ b2/build.log 2023-04-18 23:42:20.947862764 +0000 @@ -1,6 +1,9 @@ -I: pbuilder: network access will be disabled during build -I: Current time: Mon May 20 17:05:40 -12 2024 -I: pbuilder-time-stamp: 1716267940 +W: cgroups are not available on the host, not using them. +unshare: unshare failed: Cannot allocate memory +W: pbuilder: unshare CLONE_NEWNET not available +I: pbuilder: network access is available during build! +I: Current time: Wed Apr 19 13:11:20 +14 2023 +I: pbuilder-time-stamp: 1681859480 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +20,7 @@ I: copying [./snakemake_7.21.0.orig.tar.gz] I: copying [./snakemake_7.21.0-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Feb 7 10:51:39 2023 -12 +gpgv: Signature made Wed Feb 8 12:51:39 2023 +14 gpgv: using RSA key 67CB311005C4EDBE32175308DEE50D0D567EA266 gpgv: issuer "rebecca_palmer@zoho.com" gpgv: Can't check signature: No public key @@ -46,137 +49,168 @@ dpkg-source: info: applying skip-test_workflow_calling.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/123578/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 19 13:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='a1a66131a0be4587bd782b8ef5bb3af4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='123578' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=19825 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZklnUQP5/pbuilderrc_AQQG --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZklnUQP5/b1 --logfile b1/build.log snakemake_7.21.0-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZklnUQP5/pbuilderrc_0se4 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZklnUQP5/b2 --logfile b2/build.log --extrapackages usrmerge snakemake_7.21.0-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 - -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 2023 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 2023 more - -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount - -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 2023 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar - -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/123578/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Feb 13 10:21 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 01:43 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 00:20 more + -rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount + -rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:21 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Apr 19 13:11 sh -> /bin/bash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 00:20 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 598456 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 13860 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -713,7 +747,7 @@ Get: 401 http://deb.debian.org/debian bookworm/main i386 r-cran-shiny all 1.7.4+dfsg-2 [2732 kB] Get: 402 http://deb.debian.org/debian bookworm/main i386 r-cran-rmarkdown all 2.20+dfsg-1 [2265 kB] Get: 403 http://deb.debian.org/debian bookworm/main i386 stress i386 1.0.7-1 [22.5 kB] -Fetched 234 MB in 3s (80.6 MB/s) +Fetched 234 MB in 8s (30.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -2385,8 +2419,18 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/snakemake-7.21.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_7.21.0-1_source.changes +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/A99_set_merged_usr finished +I: Running cd /build/snakemake-7.21.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../snakemake_7.21.0-1_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 7.21.0-1 dpkg-buildpackage: info: source distribution unstable @@ -2419,138 +2463,138 @@ creating build/lib creating build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake -copying snakemake/persistence.py -> build/lib/snakemake -copying snakemake/script.py -> build/lib/snakemake -copying snakemake/checkpoints.py -> build/lib/snakemake -copying snakemake/workflow.py -> build/lib/snakemake -copying snakemake/rules.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake -copying snakemake/sourcecache.py -> build/lib/snakemake -copying snakemake/logging.py -> build/lib/snakemake -copying snakemake/scheduler.py -> build/lib/snakemake -copying snakemake/utils.py -> build/lib/snakemake -copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake +copying snakemake/path_modifier.py -> build/lib/snakemake +copying snakemake/dag.py -> build/lib/snakemake +copying snakemake/io.py -> build/lib/snakemake +copying snakemake/persistence.py -> build/lib/snakemake +copying snakemake/stats.py -> build/lib/snakemake +copying snakemake/resources.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake -copying snakemake/__main__.py -> build/lib/snakemake -copying snakemake/resources.py -> build/lib/snakemake -copying snakemake/parser.py -> build/lib/snakemake -copying snakemake/wrapper.py -> build/lib/snakemake -copying snakemake/gui.py -> build/lib/snakemake +copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake +copying snakemake/checkpoints.py -> build/lib/snakemake +copying snakemake/target_jobs.py -> build/lib/snakemake +copying snakemake/ruleinfo.py -> build/lib/snakemake +copying snakemake/scheduler.py -> build/lib/snakemake +copying snakemake/wrapper.py -> build/lib/snakemake +copying snakemake/script.py -> build/lib/snakemake +copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake -copying snakemake/stats.py -> build/lib/snakemake +copying snakemake/modules.py -> build/lib/snakemake +copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake -copying snakemake/ruleinfo.py -> build/lib/snakemake -copying snakemake/notebook.py -> build/lib/snakemake -copying snakemake/io.py -> build/lib/snakemake -copying snakemake/dag.py -> build/lib/snakemake +copying snakemake/rules.py -> build/lib/snakemake +copying snakemake/utils.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake -copying snakemake/path_modifier.py -> build/lib/snakemake -copying snakemake/modules.py -> build/lib/snakemake +copying snakemake/gui.py -> build/lib/snakemake +copying snakemake/parser.py -> build/lib/snakemake +copying snakemake/logging.py -> build/lib/snakemake +copying snakemake/sourcecache.py -> build/lib/snakemake +creating build/lib/snakemake/linting +copying snakemake/linting/links.py -> build/lib/snakemake/linting +copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting +copying snakemake/linting/__init__.py -> build/lib/snakemake/linting +copying snakemake/linting/rules.py -> build/lib/snakemake/linting +creating build/lib/snakemake/template_rendering +copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering +copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering +copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering +creating build/lib/snakemake/unit_tests +copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests +creating build/lib/snakemake/caching +copying snakemake/caching/remote.py -> build/lib/snakemake/caching +copying snakemake/caching/hash.py -> build/lib/snakemake/caching +copying snakemake/caching/local.py -> build/lib/snakemake/caching +copying snakemake/caching/__init__.py -> build/lib/snakemake/caching +creating build/lib/snakemake/report +copying snakemake/report/__init__.py -> build/lib/snakemake/report +copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors -copying snakemake/executors/flux.py -> build/lib/snakemake/executors +copying snakemake/executors/common.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors +copying snakemake/executors/flux.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors -copying snakemake/executors/common.py -> build/lib/snakemake/executors creating build/lib/snakemake/remote -copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote -copying snakemake/remote/FTP.py -> build/lib/snakemake/remote -copying snakemake/remote/S3.py -> build/lib/snakemake/remote -copying snakemake/remote/gfal.py -> build/lib/snakemake/remote +copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote -copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote -copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote -copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote +copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote +copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote -copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote -copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote -copying snakemake/remote/__init__.py -> build/lib/snakemake/remote -copying snakemake/remote/webdav.py -> build/lib/snakemake/remote +copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote +copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote +copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote -copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote +copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote +copying snakemake/remote/__init__.py -> build/lib/snakemake/remote +copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote +copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote +copying snakemake/remote/S3.py -> build/lib/snakemake/remote +copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote creating build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common -creating build/lib/snakemake/linting -copying snakemake/linting/rules.py -> build/lib/snakemake/linting -copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting -copying snakemake/linting/links.py -> build/lib/snakemake/linting -copying snakemake/linting/__init__.py -> build/lib/snakemake/linting -creating build/lib/snakemake/unit_tests -copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment +copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment -copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment -copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment -creating build/lib/snakemake/caching -copying snakemake/caching/remote.py -> build/lib/snakemake/caching -copying snakemake/caching/hash.py -> build/lib/snakemake/caching -copying snakemake/caching/__init__.py -> build/lib/snakemake/caching -copying snakemake/caching/local.py -> build/lib/snakemake/caching -creating build/lib/snakemake/report -copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report -copying snakemake/report/__init__.py -> build/lib/snakemake/report -creating build/lib/snakemake/template_rendering -copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering -copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering -copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering -creating build/lib/snakemake/executors/slurm -copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm -copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm -copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm +copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/data -copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data +copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data -copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data -copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data +copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data -copying snakemake/report/data/common.py -> build/lib/snakemake/report/data +copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data +copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components +creating build/lib/snakemake/executors/slurm +copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm +copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm +copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors -copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates +copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template -copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '7.21.0' installing to build/bdist.linux-i386/wheel @@ -2560,138 +2604,138 @@ creating build/bdist.linux-i386/wheel creating build/bdist.linux-i386/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/persistence.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/script.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/workflow.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/rules.py -> build/bdist.linux-i386/wheel/snakemake -creating build/bdist.linux-i386/wheel/snakemake/executors -copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-i386/wheel/snakemake/executors -copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-i386/wheel/snakemake/executors -copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-i386/wheel/snakemake/executors -creating build/bdist.linux-i386/wheel/snakemake/executors/slurm -copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-i386/wheel/snakemake/executors/slurm -copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-i386/wheel/snakemake/executors/slurm -copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-i386/wheel/snakemake/executors/slurm -copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-i386/wheel/snakemake/executors -copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-i386/wheel/snakemake/executors -copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-i386/wheel/snakemake/executors -copying build/lib/snakemake/executors/common.py -> build/bdist.linux-i386/wheel/snakemake/executors copying build/lib/snakemake/exceptions.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/logging.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/scheduler.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/utils.py -> build/bdist.linux-i386/wheel/snakemake -creating build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-i386/wheel/snakemake/remote -copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/report.css -> build/bdist.linux-i386/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/jobs.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/_version.py -> build/bdist.linux-i386/wheel/snakemake -creating build/bdist.linux-i386/wheel/snakemake/common -copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-i386/wheel/snakemake/common -copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-i386/wheel/snakemake/common +copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-i386/wheel/snakemake creating build/bdist.linux-i386/wheel/snakemake/linting -copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-i386/wheel/snakemake/linting -copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-i386/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-i386/wheel/snakemake/linting +copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-i386/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-i386/wheel/snakemake/linting +copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-i386/wheel/snakemake/linting +copying build/lib/snakemake/dag.py -> build/bdist.linux-i386/wheel/snakemake +creating build/bdist.linux-i386/wheel/snakemake/template_rendering +copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-i386/wheel/snakemake/template_rendering +copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-i386/wheel/snakemake/template_rendering +copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-i386/wheel/snakemake/template_rendering creating build/bdist.linux-i386/wheel/snakemake/unit_tests creating build/bdist.linux-i386/wheel/snakemake/unit_tests/templates -copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-i386/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-i386/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-i386/wheel/snakemake/unit_tests/templates +copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-i386/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-i386/wheel/snakemake/unit_tests -creating build/bdist.linux-i386/wheel/snakemake/deployment -copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-i386/wheel/snakemake/deployment -copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-i386/wheel/snakemake/deployment -copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-i386/wheel/snakemake/deployment -copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-i386/wheel/snakemake/deployment -copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-i386/wheel/snakemake/deployment -copying build/lib/snakemake/__main__.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/resources.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/parser.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/report.css -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/io.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/persistence.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/stats.py -> build/bdist.linux-i386/wheel/snakemake creating build/bdist.linux-i386/wheel/snakemake/caching copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-i386/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-i386/wheel/snakemake/caching -copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-i386/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-i386/wheel/snakemake/caching -copying build/lib/snakemake/wrapper.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/gui.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-i386/wheel/snakemake/caching +copying build/lib/snakemake/resources.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/jobs.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/_version.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/notebook.py -> build/bdist.linux-i386/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/scheduler.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/wrapper.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/script.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/__main__.py -> build/bdist.linux-i386/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/gui.html -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/stats.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/modules.py -> build/bdist.linux-i386/wheel/snakemake creating build/bdist.linux-i386/wheel/snakemake/report creating build/bdist.linux-i386/wheel/snakemake/report/data -copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-i386/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-i386/wheel/snakemake/report/data +copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-i386/wheel/snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-i386/wheel/snakemake/report/data -copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-i386/wheel/snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-i386/wheel/snakemake/report/data -copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-i386/wheel/snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-i386/wheel/snakemake/report/data +copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-i386/wheel/snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-i386/wheel/snakemake/report/data -copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-i386/wheel/snakemake/report/data +copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-i386/wheel/snakemake/report/data +copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-i386/wheel/snakemake/report/data creating build/bdist.linux-i386/wheel/snakemake/report/template +copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-i386/wheel/snakemake/report/template creating build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-i386/wheel/snakemake/report/template -copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-i386/wheel/snakemake/report/template +copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components +copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-i386/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-i386/wheel/snakemake/report/template +copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-i386/wheel/snakemake/report/template copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-i386/wheel/snakemake/report/template -copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-i386/wheel/snakemake/report copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-i386/wheel/snakemake/report +copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-i386/wheel/snakemake/report +copying build/lib/snakemake/workflow.py -> build/bdist.linux-i386/wheel/snakemake copying build/lib/snakemake/__init__.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/notebook.py -> build/bdist.linux-i386/wheel/snakemake -creating build/bdist.linux-i386/wheel/snakemake/template_rendering -copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-i386/wheel/snakemake/template_rendering -copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-i386/wheel/snakemake/template_rendering -copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-i386/wheel/snakemake/template_rendering -copying build/lib/snakemake/io.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/dag.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/rules.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/utils.py -> build/bdist.linux-i386/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-i386/wheel/snakemake -copying build/lib/snakemake/modules.py -> build/bdist.linux-i386/wheel/snakemake +creating build/bdist.linux-i386/wheel/snakemake/executors +copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-i386/wheel/snakemake/executors +copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-i386/wheel/snakemake/executors +copying build/lib/snakemake/executors/common.py -> build/bdist.linux-i386/wheel/snakemake/executors +creating build/bdist.linux-i386/wheel/snakemake/executors/slurm +copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-i386/wheel/snakemake/executors/slurm +copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-i386/wheel/snakemake/executors/slurm +copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-i386/wheel/snakemake/executors/slurm +copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-i386/wheel/snakemake/executors +copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-i386/wheel/snakemake/executors +copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-i386/wheel/snakemake/executors +copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-i386/wheel/snakemake/executors +copying build/lib/snakemake/gui.py -> build/bdist.linux-i386/wheel/snakemake +creating build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-i386/wheel/snakemake/remote +copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-i386/wheel/snakemake/remote +creating build/bdist.linux-i386/wheel/snakemake/common +copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-i386/wheel/snakemake/common +copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-i386/wheel/snakemake/common +creating build/bdist.linux-i386/wheel/snakemake/deployment +copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-i386/wheel/snakemake/deployment +copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-i386/wheel/snakemake/deployment +copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-i386/wheel/snakemake/deployment +copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-i386/wheel/snakemake/deployment +copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-i386/wheel/snakemake/deployment +copying build/lib/snakemake/parser.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/logging.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-i386/wheel/snakemake +copying build/lib/snakemake/gui.html -> build/bdist.linux-i386/wheel/snakemake running install_egg_info running egg_info creating snakemake.egg-info @@ -2709,7 +2753,7 @@ Copying snakemake.egg-info to build/bdist.linux-i386/wheel/snakemake-7.21.0.egg-info running install_scripts creating build/bdist.linux-i386/wheel/snakemake-7.21.0.dist-info/WHEEL -creating '/build/snakemake-7.21.0/.pybuild/cpython3_3.11_snakemake/.tmp-q_wgk3_4/snakemake-7.21.0-py3-none-any.whl' and adding 'build/bdist.linux-i386/wheel' to it +creating '/build/snakemake-7.21.0/.pybuild/cpython3_3.11_snakemake/.tmp-cn5gg7wy/snakemake-7.21.0-py3-none-any.whl' and adding 'build/bdist.linux-i386/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' @@ -3083,7 +3127,7 @@ platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/snakemake-7.21.0 -plugins: requests-mock-1.9.3, mock-3.8.2 +plugins: mock-3.8.2, requests-mock-1.9.3 collecting ... collected 380 items / 88 deselected / 292 selected .pybuild/cpython3_3.11_snakemake/build/tests/test_expand.py::test_simple_expand PASSED [ 0%] @@ -3098,34 +3142,34 @@ .pybuild/cpython3_3.11_snakemake/build/tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED [ 3%] .pybuild/cpython3_3.11_snakemake/build/tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] .pybuild/cpython3_3.11_snakemake/build/tests/test_kubernetes.py::test_issue1041 SKIPPED [ 4%] 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SKIPPED [ 12%] +.pybuild/cpython3_3.11_snakemake/build/tests/test_linting.py::test_lint[tab_usage-negative] SKIPPED [ 13%] +.pybuild/cpython3_3.11_snakemake/build/tests/test_linting.py::test_lint[version-positive] SKIPPED [ 13%] +.pybuild/cpython3_3.11_snakemake/build/tests/test_linting.py::test_lint[version-negative] SKIPPED [ 13%] .pybuild/cpython3_3.11_snakemake/build/tests/test_schema.py::test_config PASSED [ 14%] .pybuild/cpython3_3.11_snakemake/build/tests/test_schema.py::test_config_ref PASSED [ 14%] .pybuild/cpython3_3.11_snakemake/build/tests/test_schema.py::test_dataframe PASSED [ 14%] @@ -3417,7 +3461,7 @@ regex=re.compile("os.environ\[(?P['\"])(?P.+)?(?P=quote)\]"), -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 247 passed, 44 skipped, 88 deselected, 1 xfailed, 9 warnings in 1259.64s (0:20:59) = += 247 passed, 44 skipped, 88 deselected, 1 xfailed, 9 warnings in 1265.26s (0:21:05) = I: pybuild pybuild:333: rm -fr /build/snakemake-7.21.0/.pybuild/cpython3_3.11_snakemake/build/bin /build/snakemake-7.21.0/.pybuild/cpython3_3.11_snakemake/build/tests make[1]: Leaving directory '/build/snakemake-7.21.0' create-stamp debian/debhelper-build-stamp @@ -3457,25 +3501,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload -I: copying local configuration +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19825/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem -W: Stray processes left from build: -* system-pbuilder-build-snakemake_7.21.0\x2d1-123578.slice - Loaded: loaded - Active: active since Mon 2024-05-20 17:05:47 -12; 24min ago - Tasks: 1 - Memory: 205.8M - CPU: 8min 1.029s - CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-snakemake_7.21.0\x2d1.slice/system-pbuilder-build-snakemake_7.21.0\x2d1-123578.slice - `-run-rac0c3611f8ad47b68a11f1b22b258dfc.scope - `-36942 /bin/bash -c set -euo pipefail; grep 0 < test.0.txt > test.0.out - -May 20 17:05:47 ionos6-i386 systemd[1]: Created slice system-pbuilder-build-snakemake_7.21.0\x2d1-123578.slice. I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/123578 and its subdirectories -I: Current time: Mon May 20 17:30:15 -12 2024 -I: pbuilder-time-stamp: 1716269415 +I: removing directory /srv/workspace/pbuilder/19825 and its subdirectories +I: Current time: Wed Apr 19 13:40:20 +14 2023 +I: pbuilder-time-stamp: 1681861220