Diff of the two buildlogs: -- --- b1/build.log 2024-01-24 07:31:28.180174236 +0000 +++ b2/build.log 2024-01-24 10:02:48.371526947 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Feb 25 01:35:36 -12 2025 -I: pbuilder-time-stamp: 1740490536 +I: Current time: Wed Jan 24 21:31:32 +14 2024 +I: pbuilder-time-stamp: 1706081492 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -30,51 +30,83 @@ dpkg-source: info: applying fix_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/122453/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 24 07:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='44f21b360def4e58b57163754c5c844f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='122453' - PS1='# ' - PS2='> ' + INVOCATION_ID=1b28e518d13740fab28b827f417e61f4 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32450 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6aGDcupP/pbuilderrc_YbWN --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6aGDcupP/b1 --logfile b1/build.log r-cran-rstanarm_2.21.3-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6aGDcupP/pbuilderrc_lxxH --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6aGDcupP/b2 --logfile b2/build.log r-cran-rstanarm_2.21.3-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos16-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash @@ -132,15 +164,15 @@ -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts + -rwxr-xr-x 1 root root 22308 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 24 07:31 sh -> /bin/bash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 23 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar - -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile + -rwxr-xr-x 1 root root 13860 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server @@ -160,7 +192,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/122453/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -570,7 +602,7 @@ Get: 338 http://deb.debian.org/debian bookworm/main i386 r-cran-threejs all 0.3.3+dfsg-2 [881 kB] Get: 339 http://deb.debian.org/debian bookworm/main i386 r-cran-shinystan all 2.6.0-1 [2563 kB] Get: 340 http://deb.debian.org/debian bookworm/main i386 r-cran-survival i386 3.5-3-1 [5922 kB] -Fetched 250 MB in 3s (74.0 MB/s) +Fetched 250 MB in 24s (10.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18156 files and directories currently installed.) @@ -1650,8 +1682,8 @@ Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Feb 25 13:36:18 UTC 2025. -Universal Time is now: Tue Feb 25 13:36:18 UTC 2025. +Local time is now: Wed Jan 24 07:34:51 UTC 2024. +Universal Time is now: Wed Jan 24 07:34:51 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpcre3:i386 (2:8.39-15) ... @@ -1974,7 +2006,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-cran-rstanarm-2.21.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-rstanarm_2.21.3-2_source.changes +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-cran-rstanarm-2.21.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-rstanarm_2.21.3-2_source.changes dpkg-buildpackage: info: source package r-cran-rstanarm dpkg-buildpackage: info: source version 2.21.3-2 dpkg-buildpackage: info: source distribution unstable @@ -2059,178 +2095,30 @@ stan_files/jm.hpp:4707:10: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 4707 | void ctor_body(stan::io::var_context& context__, | ^~~~~~~~~ -"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -Wrote C++ file "stan_files/lm.cc" - - -g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' `"/usr/lib/R/bin/Rscript" -e "RcppParallel::CxxFlags()"` `"/usr/lib/R/bin/Rscript" -e "StanHeaders:::CxxFlags()"` -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/lm.cc -o stan_files/lm.o -"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/mvmer.stan -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -Wrote C++ file "stan_files/mvmer.cc" - - -g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' `"/usr/lib/R/bin/Rscript" -e "RcppParallel::CxxFlags()"` `"/usr/lib/R/bin/Rscript" -e "StanHeaders:::CxxFlags()"` -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/mvmer.cc -o stan_files/mvmer.o -"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/polr.stan -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -Wrote C++ file "stan_files/polr.cc" - - -g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' `"/usr/lib/R/bin/Rscript" -e "RcppParallel::CxxFlags()"` `"/usr/lib/R/bin/Rscript" -e "StanHeaders:::CxxFlags()"` -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c stan_files/polr.cc -o stan_files/polr.o - -g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' `"/usr/lib/R/bin/Rscript" -e "RcppParallel::CxxFlags()"` `"/usr/lib/R/bin/Rscript" -e "StanHeaders:::CxxFlags()"` -fpic -g -O2 -ffile-prefix-map=/build/r-base-DQneTm/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -c init.cpp -o init.o - - - - -g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o rstanarm.so stan_files/bernoulli.o stan_files/binomial.o stan_files/continuous.o stan_files/count.o stan_files/jm.o stan_files/lm.o stan_files/mvmer.o stan_files/polr.o init.o -L/usr/lib/R/site-library/RcppParallel/libs/ -ltbb -ltbbmalloc -L/usr/lib/R/lib -lR -rm stan_files/polr.cc stan_files/mvmer.cc stan_files/count.cc stan_files/lm.cc stan_files/jm.cc stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +cc1plus: out of memory allocating 10727108 bytes after a total of 328060928 bytes +make[1]: *** [/usr/lib/R/etc/Makeconf:176: stan_files/jm.o] Error 1 +rm stan_files/count.cc stan_files/jm.cc stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc make[1]: Leaving directory '/build/reproducible-path/r-cran-rstanarm-2.21.3/src' make[1]: Entering directory '/build/reproducible-path/r-cran-rstanarm-2.21.3/src' make[1]: Leaving directory '/build/reproducible-path/r-cran-rstanarm-2.21.3/src' -installing to /build/reproducible-path/r-cran-rstanarm-2.21.3/debian/r-cran-rstanarm/usr/lib/R/site-library/00LOCK-r-cran-rstanarm-2.21.3/00new/rstanarm/libs -** R -** data -*** moving datasets to lazyload DB -** demo -** inst -** byte-compile and prepare package for lazy loading -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -** help -*** installing help indices -*** copying figures -** building package indices -** installing vignettes -Error in loadNamespace(x) : there is no package called 'roxygen2' -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -** testing if installed package can be loaded from temporary location -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_base" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_stan_fit" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?) -** testing if installed package keeps a record of temporary installation path -* DONE (rstanarm) -W: Ignoring specified R dependency: R (>= 3.4.0) -I: Using r-cran-rcpp for Depends:Rcpp (>= 0.12.0) -I: Using r-cran-testthat for Recommends:testthat -I: Using r-cran-stanheaders for Recommends:stanheaders (>= 2.21.0-7-2~) -I: Using r-cran-bh for Recommends:bh -I: Using r-cran-hsaur3 for Recommends:hsaur3 -I: Using r-cran-codetools for Recommends:codetools -W: Please install devscripts to enable an attempt to create debian package for Recommends:r-base-dev. -W: Cannot find a debian package for Suggests:biglm -W: Cannot find a debian package for Suggests:betareg -I: Using r-cran-data.table for Suggests:data.table (>= 1.10.0) -I: Using r-cran-digest for Suggests:digest -I: Using r-cran-gridextra for Suggests:gridExtra -I: Using r-cran-knitr for Suggests:knitr (>= 1.15.1) -I: Using r-cran-mass for Suggests:MASS -I: Using r-cran-mgcv for Suggests:mgcv (>= 1.8-13) -I: Using r-cran-rmarkdown for Suggests:rmarkdown -I: Using r-cran-roxygen2 for Suggests:roxygen2 -I: Using r-cran-stanheaders for Suggests:StanHeaders (>= 2.21.0) -I: Using r-cran-bayesplot for Imports:bayesplot (>= 1.7.0) -I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 2.2.1) -I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-8) -I: Using r-cran-loo for Imports:loo (>= 2.1.0) -I: Using r-cran-matrix for Imports:Matrix (>= 1.2-13) -I: Using r-cran-nlme for Imports:nlme (>= 3.1-124) -I: Using r-cran-rstan for Imports:rstan (>= 2.21.1) -I: Using r-cran-rstantools for Imports:rstantools (>= 2.1.0) -I: Using r-cran-shinystan for Imports:shinystan (>= 2.3.0) -I: Using r-cran-survival for Imports:survival (>= 2.40.1) -I: Using r-cran-rcppparallel for Imports:RcppParallel (>= 5.0.1) -I: Using r-cran-stanheaders for LinkingTo:StanHeaders (>= 2.21.0) -I: Using r-cran-rstan for LinkingTo:rstan (>= 2.21.1) -I: Using r-cran-bh for LinkingTo:BH (>= 1.72.0-2) -I: Using r-cran-rcpp for LinkingTo:Rcpp (>= 0.12.0) -I: Using r-cran-rcppeigen for LinkingTo:RcppEigen (>= 0.3.3.3.0) -I: Using r-cran-rcppparallel for LinkingTo:RcppParallel (>= 5.0.1) -I: Use r-cran-rstanarm as Debian binary package for variables substitution - dh_installdocs -O--buildsystem=R - dh_installchangelogs -O--buildsystem=R - dh_installsystemduser -O--buildsystem=R - dh_perl -O--buildsystem=R - dh_link -O--buildsystem=R - dh_strip_nondeterminism -O--buildsystem=R - dh_compress -O--buildsystem=R - dh_fixperms -O--buildsystem=R - dh_missing -O--buildsystem=R - dh_dwz -a -O--buildsystem=R - dh_strip -a -O--buildsystem=R - dh_makeshlibs -a -O--buildsystem=R - dh_shlibdeps -a -O--buildsystem=R - dh_installdeb -O--buildsystem=R - dh_gencontrol -O--buildsystem=R - dh_md5sums -O--buildsystem=R - dh_builddeb -O--buildsystem=R -dpkg-deb: building package 'r-cran-rstanarm-dbgsym' in '../r-cran-rstanarm-dbgsym_2.21.3-2_i386.deb'. -dpkg-deb: building package 'r-cran-rstanarm' in '../r-cran-rstanarm_2.21.3-2_i386.deb'. - dpkg-genbuildinfo --build=binary -O../r-cran-rstanarm_2.21.3-2_i386.buildinfo - dpkg-genchanges --build=binary -O../r-cran-rstanarm_2.21.3-2_i386.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: not including original source code in upload +ERROR: compilation failed for package 'rstanarm' +* removing '/build/reproducible-path/r-cran-rstanarm-2.21.3/debian/r-cran-rstanarm/usr/lib/R/site-library/rstanarm' +dh_auto_install: error: R CMD INSTALL -l /build/reproducible-path/r-cran-rstanarm-2.21.3/debian/r-cran-rstanarm/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 04 Sep 2022 13:44:51 +0530'" returned exit code 1 +make: *** [debian/rules:4: binary] Error 25 +dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration +E: Failed autobuilding of package +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/C01_cleanup starting +debug output: disk usage on i-capture-the-hostname at Wed Jan 24 10:02:42 UTC 2024 +Filesystem Size Used Avail Use% Mounted on +tmpfs 4.0G 0 4.0G 0% /dev/shm + +I: user script /srv/workspace/pbuilder/32450/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/122453 and its subdirectories -I: Current time: Tue Feb 25 01:54:26 -12 2025 -I: pbuilder-time-stamp: 1740491666 +I: removing directory /srv/workspace/pbuilder/32450 and its subdirectories