Diff of the two buildlogs: -- --- b1/build.log 2023-04-17 20:41:50.094240315 +0000 +++ b2/build.log 2023-04-17 20:42:45.043801072 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 17 08:40:07 -12 2023 -I: pbuilder-time-stamp: 1681764007 +I: Current time: Mon May 20 17:04:50 +14 2024 +I: pbuilder-time-stamp: 1716174290 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./propka_3.5.0.orig.tar.gz] I: copying [./propka_3.5.0-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Feb 19 20:34:12 2023 -12 +gpgv: Signature made Mon Feb 20 22:34:12 2023 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -29,137 +29,169 @@ dpkg-source: info: applying no-sphinx-sitemap.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7106/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 20 17:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='ad989bc81859432aa2f8e33d21381787' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='7106' - PS1='# ' - PS2='> ' + INVOCATION_ID=55aa7b4763e6418fae27f2cc22b42b08 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=55645 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cTpIcQ5g/pbuilderrc_0nNi --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cTpIcQ5g/b1 --logfile b1/build.log propka_3.5.0-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cTpIcQ5g/pbuilderrc_exdC --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cTpIcQ5g/b2 --logfile b2/build.log --extrapackages usrmerge propka_3.5.0-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 - -rwxr-xr-x 1 root root 1408088 Feb 12 08:21 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more - -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount - -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 08:21 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/7106/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Feb 13 2023 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 2023 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 2023 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 2023 more + -rwsr-xr-x 1 root root 58912 Mar 24 2023 mount + -rwxr-xr-x 1 root root 13856 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 2023 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 May 20 17:04 sh -> /bin/bash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 2023 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 598456 Apr 7 2023 tar + -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 2023 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -304,7 +336,7 @@ Get: 91 http://deb.debian.org/debian bookworm/main i386 python3-sphinx all 5.3.0-4 [549 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 python3-sphinx-rtd-theme all 1.2.0+dfsg-1 [27.7 kB] -Fetched 51.2 MB in 1s (41.7 MB/s) +Fetched 51.2 MB in 1s (86.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -704,8 +736,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/propka-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../propka_3.5.0-1_source.changes +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/propka-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../propka_3.5.0-1_source.changes dpkg-buildpackage: info: source package propka dpkg-buildpackage: info: source version 3.5.0-1 dpkg-buildpackage: info: source distribution unstable @@ -741,40 +784,40 @@ running build running build_py creating /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/ligand_pka_values.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/input.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/hybrid36.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/conformation_container.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/hydrogens.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/energy.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/molecular_container.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/atom.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/vector_algebra.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/calculations.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/lib.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/hydrogens.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/_version.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/ligand.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/run.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/group.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/iterative.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/coupled_groups.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/determinants.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/version.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/__init__.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/__main__.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/vector_algebra.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/ligand_pka_values.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/determinant.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/group.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/ligand.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/lib.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/coupled_groups.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/__main__.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/hybrid36.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/atom.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/__init__.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/_version.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/parameters.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/input.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/run.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/protonate.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka -copying propka/output.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/bonds.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/molecular_container.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/conformation_container.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/iterative.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka +copying propka/output.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka creating /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests -copying tests/test_version.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests -copying tests/test_basic_regression.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests -copying tests/test_run.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests copying tests/test_streamio.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests copying tests/test_hybrid36.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests copying tests/__init__.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests copying tests/test_protonate.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests +copying tests/test_basic_regression.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests +copying tests/test_version.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests +copying tests/test_run.py -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests copying propka/propka.cfg -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka copying propka/protein_bonds.json -> /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka UPDATING /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/_version.py @@ -785,7 +828,7 @@ WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from https://docs.python.org/3/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) [autosummary] generating autosummary for: api.rst, changelog.rst, command.rst, index.rst, installation.rst, quickstart.rst, references.rst [autosummary] generating autosummary for: /build/propka-3.5.0/docs/source/api/propka.atom.rst, /build/propka-3.5.0/docs/source/api/propka.bonds.rst, /build/propka-3.5.0/docs/source/api/propka.calculations.rst, /build/propka-3.5.0/docs/source/api/propka.conformation_container.rst, /build/propka-3.5.0/docs/source/api/propka.coupled_groups.rst, /build/propka-3.5.0/docs/source/api/propka.determinant.rst, /build/propka-3.5.0/docs/source/api/propka.determinants.rst, /build/propka-3.5.0/docs/source/api/propka.energy.rst, /build/propka-3.5.0/docs/source/api/propka.group.rst, /build/propka-3.5.0/docs/source/api/propka.hybrid36.rst, ..., /build/propka-3.5.0/docs/source/api/propka.lib.rst, /build/propka-3.5.0/docs/source/api/propka.ligand.rst, /build/propka-3.5.0/docs/source/api/propka.ligand_pka_values.rst, /build/propka-3.5.0/docs/source/api/propka.molecular_container.rst, /build/propka-3.5.0/docs/source/api/propka.output.rst, /build/propka-3.5.0/docs/source/api/propka.parameters.rst, /build/propka-3.5.0/docs/source/api/propka.protonate.rst, /build/propka-3.5.0/docs/source/api/propka.run.rst, /build/propka-3.5.0/docs/source/api/propka.vector_algebra.rst, /build/propka-3.5.0/docs/source/api/propka.version.rst building [mo]: targets for 0 po files that are out of date @@ -897,7 +940,7 @@ WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from https://docs.python.org/3/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) [autosummary] generating autosummary for: api.rst, api/propka.atom.rst, api/propka.bonds.rst, api/propka.calculations.rst, api/propka.conformation_container.rst, api/propka.coupled_groups.rst, api/propka.determinant.rst, api/propka.determinants.rst, api/propka.energy.rst, api/propka.group.rst, ..., api/propka.protonate.rst, api/propka.run.rst, api/propka.vector_algebra.rst, api/propka.version.rst, changelog.rst, command.rst, index.rst, installation.rst, quickstart.rst, references.rst building [mo]: targets for 0 po files that are out of date building [man]: all manpages @@ -964,7 +1007,7 @@ return get_provider(package_or_requirement).get_resource_filename( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -======================= 27 passed, 22 warnings in 11.22s ======================= +======================= 27 passed, 22 warnings in 4.79s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -984,109 +1027,109 @@ creating /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11 creating /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages creating /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/ligand_pka_values.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/input.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/hybrid36.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/conformation_container.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/hydrogens.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/energy.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/propka.cfg -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/molecular_container.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/atom.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/vector_algebra.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/calculations.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/lib.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/hydrogens.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/_version.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/protein_bonds.json -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/ligand.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/run.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/group.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/iterative.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/coupled_groups.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/determinants.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/version.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__init__.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__main__.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/vector_algebra.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/ligand_pka_values.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/determinant.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/group.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/propka.cfg -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/ligand.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/lib.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/coupled_groups.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__main__.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/protein_bonds.json -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/hybrid36.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/atom.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__init__.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/_version.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/parameters.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/input.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/run.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/protonate.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka creating /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/lib.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/molecular_container.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/parameters.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/version.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/ligand.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/protonate.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/atom.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/__init__.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/iterative.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/vector_algebra.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/hybrid36.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/input.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/hydrogens.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/group.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/determinant.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/calculations.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/coupled_groups.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/output.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/ligand.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/_version.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/run.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/input.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/determinants.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/lib.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/bonds.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/atom.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/vector_algebra.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/conformation_container.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/protonate.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/hydrogens.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/group.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/energy.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/determinant.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/molecular_container.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/ligand_pka_values.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/conformation_container.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/coupled_groups.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/determinants.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/iterative.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/run.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/parameters.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/protonate.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/output.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/parameters.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/__pycache__/version.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/bonds.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/molecular_container.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/conformation_container.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/iterative.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/propka/output.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka creating /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_version.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_basic_regression.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_run.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_streamio.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_hybrid36.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__init__.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_protonate.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests creating /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_basic_regression.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_version.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/__init__.cpython-311.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_protonate.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ -copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_hybrid36.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_run.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_streamio.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/ligand_pka_values.py to ligand_pka_values.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/input.py to input.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/hybrid36.py to hybrid36.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/conformation_container.py to conformation_container.cpython-311.pyc +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_hybrid36.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_protonate.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/__pycache__/test_version.cpython-311-pytest-7.2.1.pyc -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__pycache__ +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_basic_regression.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_version.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests +copying /build/propka-3.5.0/.pybuild/cpython3_3.11_propka/build/tests/test_run.py -> /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/hydrogens.py to hydrogens.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/energy.py to energy.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/molecular_container.py to molecular_container.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/atom.py to atom.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/vector_algebra.py to vector_algebra.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/calculations.py to calculations.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/lib.py to lib.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/hydrogens.py to hydrogens.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/_version.py to _version.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/ligand.py to ligand.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/run.py to run.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/group.py to group.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/iterative.py to iterative.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/coupled_groups.py to coupled_groups.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/determinants.py to determinants.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/version.py to version.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__main__.py to __main__.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/vector_algebra.py to vector_algebra.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/ligand_pka_values.py to ligand_pka_values.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/determinant.py to determinant.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/group.py to group.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/ligand.py to ligand.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/lib.py to lib.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/coupled_groups.py to coupled_groups.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__main__.py to __main__.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/hybrid36.py to hybrid36.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/atom.py to atom.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/_version.py to _version.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/parameters.py to parameters.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/input.py to input.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/run.py to run.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/protonate.py to protonate.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/output.py to output.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/bonds.py to bonds.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_version.py to test_version.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_basic_regression.py to test_basic_regression.cpython-311.pyc -byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_run.py to test_run.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/molecular_container.py to molecular_container.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/conformation_container.py to conformation_container.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/iterative.py to iterative.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/propka/output.py to output.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_streamio.py to test_streamio.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_hybrid36.py to test_hybrid36.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_protonate.py to test_protonate.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_basic_regression.py to test_basic_regression.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_version.py to test_version.cpython-311.pyc +byte-compiling /build/propka-3.5.0/debian/python3-propka/usr/lib/python3.11/dist-packages/tests/test_run.py to test_run.cpython-311.pyc running install_egg_info running egg_info creating propka.egg-info @@ -1141,12 +1184,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/55645/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7106 and its subdirectories -I: Current time: Mon Apr 17 08:41:49 -12 2023 -I: pbuilder-time-stamp: 1681764109 +I: removing directory /srv/workspace/pbuilder/55645 and its subdirectories +I: Current time: Mon May 20 17:05:43 +14 2024 +I: pbuilder-time-stamp: 1716174343