Diff of the two buildlogs: -- --- b1/build.log 2023-05-20 01:35:45.090638400 +0000 +++ b2/build.log 2023-05-20 01:50:15.412624884 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Fri May 19 12:42:34 -12 2023 -I: pbuilder-time-stamp: 1684543354 +I: Current time: Fri Jun 21 22:00:47 +14 2024 +I: pbuilder-time-stamp: 1718956847 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -18,7 +17,7 @@ I: copying [./meep-mpi-default_1.25.0.orig.tar.gz] I: copying [./meep-mpi-default_1.25.0-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed May 10 02:56:24 2023 -12 +gpgv: Signature made Thu May 11 04:56:24 2023 +14 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key @@ -30,136 +29,169 @@ dpkg-source: info: applying i386-fix.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/10875/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 21 22:00 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='10875' - PS1='# ' - PS2='> ' + INVOCATION_ID=0ea82cd76c1842829198862d4d0c5a26 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12062 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b9geqoR3/pbuilderrc_Kt0H --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b9geqoR3/b1 --logfile b1/build.log meep-mpi-default_1.25.0-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b9geqoR3/pbuilderrc_90XI --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b9geqoR3/b2 --logfile b2/build.log --extrapackages usrmerge meep-mpi-default_1.25.0-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 5.10.0-23-686-pae #1 SMP Debian 5.10.179-1 (2023-05-12) i686 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 6036 - -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more - -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount - -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/10875/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Apr 24 2023 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 2023 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 2023 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 2023 more + -rwsr-xr-x 1 root root 58912 Mar 24 2023 mount + -rwxr-xr-x 1 root root 13856 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 21 22:00 sh -> /bin/bash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 2023 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 598456 Apr 7 2023 tar + -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 2023 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -409,7 +441,7 @@ Get: 174 http://deb.debian.org/debian bookworm/main i386 quilt all 0.67+really0.66-1 [303 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 swig4.0 i386 4.1.0-0.2 [1445 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 swig all 4.1.0-0.2 [321 kB] -Fetched 104 MB in 7s (14.1 MB/s) +Fetched 104 MB in 1s (95.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -1149,10 +1181,17 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/meep-mpi-default-1.25.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../meep-mpi-default_1.25.0-2_source.changes +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/meep-mpi-default-1.25.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../meep-mpi-default_1.25.0-2_source.changes dpkg-buildpackage: info: source package meep-mpi-default dpkg-buildpackage: info: source version 1.25.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1207,7 +1246,7 @@ ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu --build=i686-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --with-mpi=yes --enable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a race-free mkdir -p... /bin/mkdir -p +checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -1240,10 +1279,10 @@ checking host system type... i686-pc-linux-gnu checking for C++ compiler vendor... gnu checking how to print strings... printf -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B @@ -1266,8 +1305,8 @@ checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no @@ -1421,7 +1460,7 @@ config.status: executing libtool commands make[1]: Leaving directory '/build/meep-mpi-default-1.25.0' dh_auto_build - make -j8 + make -j15 make[1]: Entering directory '/build/meep-mpi-default-1.25.0' make all-recursive make[2]: Entering directory '/build/meep-mpi-default-1.25.0' @@ -1432,7 +1471,7 @@ make[4]: Entering directory '/build/meep-mpi-default-1.25.0/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-mpi-default-1.25.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h @@ -1440,34 +1479,56 @@ make[4]: Entering directory '/build/meep-mpi-default-1.25.0/src' Making all in support make[5]: Entering directory '/build/meep-mpi-default-1.25.0/src/support' -/bin/bash ../../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937ar.lo mt19937ar.c +/bin/sh ../../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937ar.lo mt19937ar.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o .libs/mt19937ar.o libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o mt19937ar.o >/dev/null 2>&1 -/bin/bash ../../libtool --tag=CC --mode=link i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../../libtool --tag=CC --mode=link i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-ar cr .libs/libsupport.a .libs/mt19937ar.o libtool: link: i686-linux-gnu-ranlib .libs/libsupport.a libtool: link: ( cd ".libs" && rm -f "libsupport.la" && ln -s "../libsupport.la" "libsupport.la" ) make[5]: Leaving directory '/build/meep-mpi-default-1.25.0/src/support' make[5]: Entering directory '/build/meep-mpi-default-1.25.0/src' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 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+/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cw_fields.lo cw_fields.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft.lo dft.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o energy_and_flux.lo energy_and_flux.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o fields.lo fields.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o 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-fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o .libs/casimir.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o .libs/h5fields.o dft.cpp:269: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 269 | PLOOP_OVER_IVECS(fc->gv, is, ie, idx) { | +boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': +boundaries.cpp:120:7: warning: this statement may fall through [-Wimplicit-fallthrough=] + 120 | switch (d) { + | ^~~~~~ +boundaries.cpp:128:5: note: here + 128 | case D3: + | ^~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 dft.cpp: In member function 'std::complex meep::dft_chunk::process_dft_component(int, meep::direction*, meep::ivec, meep::ivec, int, meep::h5file*, meep::realnum*, int, std::complex*, void*, void*, int, bool, meep::fields*)': dft.cpp:912:34: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 912 | "array of size %lu", @@ -1486,39 +1547,6 @@ | | | | long unsigned int size_t {aka unsigned int} | %u -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 -boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': -boundaries.cpp:120:7: warning: this statement may fall through [-Wimplicit-fallthrough=] - 120 | switch (d) { - | ^~~~~~ -boundaries.cpp:128:5: note: here - 128 | case D3: - | ^~~~ -libtool: compile: mpic++ 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/usr/lib/i386-linux-gnu/openmpi/include/mpi.h:2887, from mympi.cpp:32: @@ -1564,25 +1611,11 @@ /usr/lib/i386-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ -monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': -monitor.cpp:327:19: warning: 'comp_list' may be used uninitialized [-Wmaybe-uninitialized] - 327 | component cc = comp_list[com_it]; - | ^~ -monitor.cpp:274:15: note: 'comp_list' declared here - 274 | component comp_list[3]; - | ^~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o -multilevel-atom.cpp: In member function 'virtual void* meep::multilevel_susceptibility::new_internal_data(meep::realnum* (*)[2], const meep::grid_volume&) const': -multilevel-atom.cpp:138:53: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 138 | if (d == NULL) meep::abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, sz); - | ~~^ ~~ - | | | - | long unsigned int size_t {aka unsigned int} - | %u libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o mympi.cpp: In function 'void meep::abort(const char*, ...)': mympi.cpp:242:12: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 242 | vasprintf(&s, fmt, ap); @@ -1591,15 +1624,17 @@ mympi.cpp:686:16: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 686 | vasprintf(&s, fmt, ap); | ~~~~~~~~~^~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp +multilevel-atom.cpp: In member function 'virtual void* meep::multilevel_susceptibility::new_internal_data(meep::realnum* (*)[2], const meep::grid_volume&) const': +multilevel-atom.cpp:138:53: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 138 | if (d == NULL) meep::abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, sz); + | ~~^ ~~ + | | | + | long unsigned int size_t {aka unsigned int} + | %u +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 -step.cpp:144: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 144 | CHUNK_OPENMP - | output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:115:35: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 115 | snprintf(outdirname, buflen, "%s-out", basename); @@ -1645,9 +1680,23 @@ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 +step.cpp:144: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 144 | CHUNK_OPENMP + | +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o time.lo time.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o In file included from sources.cpp:27: meep_internals.hpp: In constructor 'meep::src_vol::src_vol(meep::component, meep::src_time*, std::vector&&, std::vector >&&, bool)': meep_internals.hpp:82:38: warning: 'meep::src_vol::amp' will be initialized after [-Wreorder] @@ -1659,20 +1708,6 @@ sources.cpp:168:1: warning: when initialized here [-Wreorder] 168 | src_vol::src_vol(component cc, src_time *st, std::vector &&ind, | ^~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 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-I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o susceptibility.cpp:228: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 228 | PLOOP_OVER_VOL_OWNED(gv, c, i) { | @@ -1682,11 +1717,13 @@ susceptibility.cpp:252: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 252 | PLOOP_OVER_VOL_OWNED(gv, c, i) { | -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o time.lo time.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o susceptibility.cpp: In member function 'virtual void* meep::lorentzian_susceptibility::new_internal_data(meep::realnum* (*)[2], const meep::grid_volume&) const': susceptibility.cpp:116:53: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 116 | if (d == NULL) meep::abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, sz); @@ -1701,59 +1738,14 @@ | | | | long unsigned int size_t {aka unsigned int} | %u -structure_dump.cpp: In member function 'void meep::structure::dump(const char*, bool)': -structure_dump.cpp:296:46: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] - 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^ -structure_dump.cpp:296:31: note: using the range [-2147483648, 2147483647] for directive argument - 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:906, - from structure_dump.cpp:22: -In function 'int snprintf(char*, size_t, const char*, ...)', - inlined from 'void meep::structure::dump(const char*, bool)' at structure_dump.cpp:296:19: -/usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 - 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 55 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 56 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o -structure_dump.cpp: In member function 'void meep::structure::load(const char*, bool)': -structure_dump.cpp:748:44: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] - 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^~ -structure_dump.cpp:748:31: note: directive argument in the range [0, 19] - 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^~~~~~~~~~~~~~~~~~~ -structure_dump.cpp:748:31: note: directive argument in the range [0, 4] -In function 'int snprintf(char*, size_t, const char*, ...)', - inlined from 'void meep::structure::load(const char*, bool)' at structure_dump.cpp:748:19: -/usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 24 bytes into a destination of size 20 - 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 55 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 56 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o vec.lo vec.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC 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-Werror=format-security -Wall -W -c -o vec.lo vec.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic.lo step_generic.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic.lo step_generic.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o -meepgeom.cpp:2959: warning: ignoring '#pragma unroll ' [-Wunknown-pragmas] - 2959 | #pragma unroll - | step_generic.cpp:91: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 91 | PLOOP_OVER_IVECS(gv, is, ie, i) { | @@ -1880,58 +1872,57 @@ step_generic.cpp:583: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 583 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] = g[i]; } | -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp +structure_dump.cpp: In member function 'void meep::structure::dump(const char*, bool)': +structure_dump.cpp:296:46: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] + 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^ +structure_dump.cpp:296:31: note: using the range [-2147483648, 2147483647] for directive argument + 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:906, + from structure_dump.cpp:22: +In function 'int snprintf(char*, size_t, const char*, ...)', + inlined from 'void meep::structure::dump(const char*, bool)' at structure_dump.cpp:296:19: +/usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 + 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 55 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 56 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 +structure_dump.cpp: In member function 'void meep::structure::load(const char*, bool)': +structure_dump.cpp:748:44: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] + 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^~ +structure_dump.cpp:748:31: note: directive argument in the range [0, 19] + 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^~~~~~~~~~~~~~~~~~~ +structure_dump.cpp:748:31: note: directive argument in the range [0, 4] +In function 'int snprintf(char*, size_t, const char*, ...)', + inlined from 'void meep::structure::load(const char*, bool)' at structure_dump.cpp:748:19: +/usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 24 bytes into a destination of size 20 + 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 55 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 56 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o +meepgeom.cpp:2959: warning: ignoring '#pragma unroll ' [-Wunknown-pragmas] + 2959 | #pragma unroll + | +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o -meepgeom.cpp: In copy constructor 'meep_geom::geom_epsilon::geom_epsilon(const meep_geom::geom_epsilon&)': -meepgeom.cpp:711:1: warning: base class 'class meep::material_function' should be explicitly initialized in the copy constructor [-Wextra] - 711 | geom_epsilon::geom_epsilon(const geom_epsilon &geps1) { - | ^~~~~~~~~~~~ -meepgeom.cpp: In function 'std::complex meep_geom::get_material_gradient(const meep::vec&, meep::component, meep::component, std::complex, double, geom_epsilon*, meep::grid_volume&, double, double*, int)': -meepgeom.cpp:2685:46: warning: unused variable 'dA_du' [-Wunused-variable] - 2685 | std::complex row_1[3], row_2[3], dA_du[3]; - | ^~~~~ -meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient(double*, size_t, size_t, std::vector, std::vector, double*, double, meep::grid_volume&, meep::volume&, geom_epsilon*, double)': -meepgeom.cpp:2838:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 2838 | for (int i = 0; i < ng * nf; i++) { - | ~~^~~~~~~~~ -meepgeom.cpp:2867:52: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 2867 | meep::abort("The number of adjoint chunks (%ld) is not equal to the number of forward chunks " - | ~~^ - | | - | long int - | %d - 2868 | "(%ld).\n", - 2869 | c_adjoint_dft_chunks.size(), c_forward_dft_chunks.size()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ - | | - | std::vector::size_type {aka unsigned int} -meepgeom.cpp:2868:23: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 2868 | "(%ld).\n", - | ~~^ - | | - | long int - | %d - 2869 | c_adjoint_dft_chunks.size(), c_forward_dft_chunks.size()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ - | | - | std::vector::size_type {aka unsigned int} -meepgeom.cpp:2895:49: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 2895 | if ((num_f_chunks == 0) || (cur_chunk >= num_f_chunks)) continue; - | ~~~~~~~~~~^~~~~~~~~~~~~~~ -meepgeom.cpp:2962:35: warning: comparison of integer expressions of different signedness: 'ptrdiff_t' {aka 'int'} and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 2962 | fwd1 = ((fwd1_idx >= fwd_chunk->N) || (fwd1_idx < 0)) - | ~~~~~~~~~^~~~~~~~~~~~~~~ -meepgeom.cpp:2966:35: warning: comparison of integer expressions of different signedness: 'ptrdiff_t' {aka 'int'} and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 2966 | fwd2 = ((fwd2_idx >= fwd_chunk->N) || (fwd2_idx < 0)) - | ~~~~~~~~~^~~~~~~~~~~~~~~ -meepgeom.cpp:3000:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 3000 | for (int ii = 0; ii < adjoint_dft_chunks[i].size(); ii++) { - | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -meepgeom.cpp:2832:88: warning: unused parameter 'where' [-Wunused-parameter] - 2832 | double scalegrad, meep::grid_volume &gv, meep::volume &where, - | ~~~~~~~~~~~~~~^~~~~ step_generic_stride1.cpp:93: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 93 | PS1LOOP_OVER_IVECS(gv, is, ie, i) { | @@ -2100,14 +2091,62 @@ 585 | PS1LOOP_OVER_IVECS(gv, is, ie, i) { f[i] = g[i]; } | step_generic_stride1.cpp:585: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] +meepgeom.cpp: In copy constructor 'meep_geom::geom_epsilon::geom_epsilon(const meep_geom::geom_epsilon&)': +meepgeom.cpp:711:1: warning: base class 'class meep::material_function' should be explicitly initialized in the copy constructor [-Wextra] + 711 | geom_epsilon::geom_epsilon(const geom_epsilon &geps1) { + | ^~~~~~~~~~~~ +meepgeom.cpp: In function 'std::complex meep_geom::get_material_gradient(const meep::vec&, meep::component, meep::component, std::complex, double, geom_epsilon*, meep::grid_volume&, double, double*, int)': +meepgeom.cpp:2685:46: warning: unused variable 'dA_du' [-Wunused-variable] + 2685 | std::complex row_1[3], row_2[3], dA_du[3]; + | ^~~~~ +meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient(double*, size_t, size_t, std::vector, std::vector, double*, double, meep::grid_volume&, meep::volume&, geom_epsilon*, double)': +meepgeom.cpp:2838:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 2838 | for (int i = 0; i < ng * nf; i++) { + | ~~^~~~~~~~~ +meepgeom.cpp:2867:52: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 2867 | meep::abort("The number of adjoint chunks (%ld) is not equal to the number of forward chunks " + | ~~^ + | | + | long int + | %d + 2868 | "(%ld).\n", + 2869 | c_adjoint_dft_chunks.size(), c_forward_dft_chunks.size()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ + | | + | std::vector::size_type {aka unsigned int} +meepgeom.cpp:2868:23: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 2868 | "(%ld).\n", + | ~~^ + | | + | long int + | %d + 2869 | c_adjoint_dft_chunks.size(), c_forward_dft_chunks.size()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ + | | + | std::vector::size_type {aka unsigned int} +meepgeom.cpp:2895:49: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 2895 | if ((num_f_chunks == 0) || (cur_chunk >= num_f_chunks)) continue; + | ~~~~~~~~~~^~~~~~~~~~~~~~~ +meepgeom.cpp:2962:35: warning: comparison of integer expressions of different signedness: 'ptrdiff_t' {aka 'int'} and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 2962 | fwd1 = ((fwd1_idx >= fwd_chunk->N) || (fwd1_idx < 0)) + | ~~~~~~~~~^~~~~~~~~~~~~~~ +meepgeom.cpp:2966:35: warning: comparison of integer expressions of different signedness: 'ptrdiff_t' {aka 'int'} and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 2966 | fwd2 = ((fwd2_idx >= fwd_chunk->N) || (fwd2_idx < 0)) + | ~~~~~~~~~^~~~~~~~~~~~~~~ +meepgeom.cpp:3000:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 3000 | for (int ii = 0; ii < adjoint_dft_chunks[i].size(); ii++) { + | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +meepgeom.cpp:2832:88: warning: unused parameter 'where' [-Wunused-parameter] + 2832 | double scalegrad, meep::grid_volume &gv, meep::volume &where, + | ~~~~~~~~~~~~~~^~~~~ meepgeom.cpp: In function 'std::complex meep_geom::cond_cmp(meep::component, const meep::vec&, double, geom_epsilon*)': meepgeom.cpp:2617:1: warning: control reaches end of non-void function [-Wreturn-type] 2617 | } | ^ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient_point(double*, vector3, double, geom_epsilon*, meep::component, meep::component, std::complex, std::complex, double, meep::grid_volume&, double)': meepgeom.cpp:2824:28: warning: 'kind' may be used uninitialized [-Wmaybe-uninitialized] 2824 | add_interpolate_weights(p.x, p.y, p.z, vcur, sz.x, sz.y, sz.z, 1, scalegrad, ucur, kind, uval, @@ -2119,7 +2158,7 @@ | ^~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/i386-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo fields_dump.lo fix_boundary_sources.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo material_data.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/i386-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo fields_dump.lo fix_boundary_sources.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo material_data.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/12/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/fields_dump.o .libs/fix_boundary_sources.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/material_data.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -lfftw3 -lgfortran -lquadmath -L/usr/lib/i386-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/12/crtendS.o /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeep.so.30 -o .libs/libmeep.so.30.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.30" && ln -s "libmeep.so.30.0.0" "libmeep.so.30") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.30.0.0" "libmeep.so") @@ -2172,6 +2211,18 @@ | : note: this is the location of the previous definition In file included from ctl-io.h:7, + from main.cpp:37: +main.cpp: In function 'void main_entry(void*, int, char**)': +main.cpp:194:31: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] + 194 | gh_new_procedure("subplex", (SCM(*)(void))subplex_scm, 7, 0, 0); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +main.cpp:202:44: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] + 202 | gh_new_procedure("adaptive-integration", (SCM(*)(void))adaptive_integration_scm, 6, 0, 0); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +main.cpp:205:45: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] + 205 | gh_new_procedure("cadaptive-integration", (SCM(*)(void))cadaptive_integration_scm, 6, 0, 0); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function 'void ctlio::export_external_functions()': ctl-io.cpp:2229:38: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] @@ -2192,22 +2243,19 @@ ctl-io.cpp:2234:42: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 2234 | gh_new_procedure("point-in-object?-aux", (SCM (*)()) point_in_objectp_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ctl-io.h:7, - from main.cpp:37: -main.cpp: In function 'void main_entry(void*, int, char**)': -main.cpp:194:31: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] - 194 | gh_new_procedure("subplex", (SCM(*)(void))subplex_scm, 7, 0, 0); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -main.cpp:202:44: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] - 202 | gh_new_procedure("adaptive-integration", (SCM(*)(void))adaptive_integration_scm, 6, 0, 0); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -main.cpp:205:45: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] - 205 | gh_new_procedure("cadaptive-integration", (SCM(*)(void))cadaptive_integration_scm, 6, 0, 0); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ geom.cpp: In function 'vector3 normal_to_prism(ctlio::prism*, vector3)': geom.cpp:2357:11: warning: variable 'axisp' set but not used [-Wunused-but-set-variable] 2357 | vector3 axisp = vector3_scale(height, zhatp); | ^~~~~ +In function 'bool get_front_object(const meep::volume&, geom_box_tree, vector3&, const ctlio::geometric_object**, vector3&, ctlio::material_type&, ctlio::material_type&)', + inlined from 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)' at structure.cpp:618:40: +structure.cpp:581:10: warning: 'mat1' may be used uninitialized [-Wmaybe-uninitialized] + 581 | mat2 = mat1; + | ~~~~~^~~~~~ +structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': +structure.cpp:509:17: note: 'mat1' declared here + 509 | material_type mat1, mat2; + | ^~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:35983:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 35983 | arg1 = (meep::component const) scm_to_int(argv[0]); @@ -2229,16 +2277,7 @@ meep_wrap.cxx:36115:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 36115 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'bool get_front_object(const meep::volume&, geom_box_tree, vector3&, const ctlio::geometric_object**, vector3&, ctlio::material_type&, ctlio::material_type&)', - inlined from 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)' at structure.cpp:618:40: -structure.cpp:581:10: warning: 'mat1' may be used uninitialized [-Wmaybe-uninitialized] - 581 | mat2 = mat1; - | ~~~~~^~~~~~ -structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': -structure.cpp:509:17: note: 'mat1' declared here - 509 | material_type mat1, mat2; - | ^~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-mpi-default-1.25.0/scheme' make[3]: Leaving directory '/build/meep-mpi-default-1.25.0/scheme' @@ -2254,7 +2293,7 @@ fi make all-am make[4]: Entering directory '/build/meep-mpi-default-1.25.0/python' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o .libs/_meep_la-meep-python.o meep-python.cxx: In function 'meep::structure* create_structure(vector3, std::vector, std::vector, std::vector, std::vector, std::vector, meep::grid_volume&, const meep::boundary_region&, const meep::symmetry&, int, double, bool, double, int, geometric_object_list, vector3, bool, meep_geom::material_type, meep_geom::absorber_list, meep_geom::material_type_list, bool, bool, meep::structure*, bool, const meep::binary_partition*)': meep-python.cxx:7526:62: warning: unused parameter 'alist' [-Wunused-parameter] @@ -11360,7 +11399,7 @@ 115 | static PyObject *py_volume_object() { | ^~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/12/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-mpi-default-1.25.0/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/i386-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/12/crtendS.o /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.30 -o .libs/_meep.so.30.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.30" && ln -s "_meep.so.30.0.0" "_meep.so.30") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.30.0.0" "_meep.so") @@ -11410,94 +11449,94 @@ make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical dump_load flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d bend-flux-ll array-metadata make[4]: Entering directory '/build/meep-mpi-default-1.25.0/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now 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-lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o user-defined-material user-defined-material.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o .libs/user-defined-material user-defined-material.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft-fields.o dft-fields.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o .libs/dft-fields dft-fields.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o gdsII-3d.o gdsII-3d.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o .libs/gdsII-3d gdsII-3d.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o .libs/bend-flux-ll bend-flux-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array-metadata.o array-metadata.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o .libs/array-metadata array-metadata.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-mpi-default-1.25.0/tests' make check-TESTS @@ -11665,8 +11704,8 @@ make[5]: Leaving directory '/build/meep-mpi-default-1.25.0/src/support' make[5]: Entering directory '/build/meep-mpi-default-1.25.0/src' make[6]: Entering directory '/build/meep-mpi-default-1.25.0/src' - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.30.0.0 /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.30.0.0 libtool: install: (cd /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeep.so.30.0.0 libmeep.so.30 || { rm -f libmeep.so.30 && ln -s libmeep.so.30.0.0 libmeep.so.30; }; }) libtool: install: (cd /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeep.so.30.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.30.0.0 libmeep.so; }; }) @@ -11675,9 +11714,9 @@ libtool: install: chmod 644 /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: install: i686-linux-gnu-ranlib /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/include' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/include' /usr/bin/install -c -m 644 meep.hpp '/build/meep-mpi-default-1.25.0/debian/tmp/usr/include' - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/include/meep' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meep/mympi.hpp meep/vec.hpp meep/meep-config.h meepgeom.hpp material_data.hpp adjust_verbosity.hpp '/build/meep-mpi-default-1.25.0/debian/tmp/usr/include/meep' make[6]: Leaving directory '/build/meep-mpi-default-1.25.0/src' make[5]: Leaving directory '/build/meep-mpi-default-1.25.0/src' @@ -11695,11 +11734,11 @@ make install-am make[4]: Entering directory '/build/meep-mpi-default-1.25.0/scheme' make[5]: Entering directory '/build/meep-mpi-default-1.25.0/scheme' - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-mpi-default-1.25.0/debian/tmp/usr/bin' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/meep-mpi-default-1.25.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-mpi-default-1.25.0/debian/tmp/usr/bin/meep - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/share/meep' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/share/meep' /usr/bin/install -c -m 644 meep.scm meep-enums.scm casimir.scm materials.scm '/build/meep-mpi-default-1.25.0/debian/tmp/usr/share/meep' make[5]: Leaving directory '/build/meep-mpi-default-1.25.0/scheme' make[4]: Leaving directory '/build/meep-mpi-default-1.25.0/scheme' @@ -11709,10 +11748,10 @@ make install-am make[4]: Entering directory '/build/meep-mpi-default-1.25.0/python' make[5]: Entering directory '/build/meep-mpi-default-1.25.0/python' - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' - /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' + /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' libtool: warning: relinking '_meep.la' -libtool: install: (cd /build/meep-mpi-default-1.25.0/python; /bin/bash "/build/meep-mpi-default-1.25.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-mpi-default-1.25.0/debian/tmp) +libtool: install: (cd /build/meep-mpi-default-1.25.0/python; /bin/sh "/build/meep-mpi-default-1.25.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-mpi-default-1.25.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/12/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -L/usr/lib/i386-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/i386-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/12/crtendS.o /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.30 -o .libs/_meep.so.30.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.30.0.0T /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.so.30.0.0 libtool: install: (cd /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep && { ln -s -f _meep.so.30.0.0 _meep.so.30 || { rm -f _meep.so.30 && ln -s _meep.so.30.0.0 _meep.so.30; }; }) @@ -11722,13 +11761,13 @@ libtool: install: chmod 644 /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.a libtool: install: i686-linux-gnu-ranlib /build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/meep' - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint' /usr/bin/install -c -m 644 ./adjoint/__init__.py ./adjoint/basis.py ./adjoint/objective.py ./adjoint/optimization_problem.py ./adjoint/filters.py ./adjoint/filter_source.py ./adjoint/connectivity.py ./adjoint/wrapper.py ./adjoint/utils.py '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint' Byte-compiling python modules... __init__.pybasis.pyobjective.pyoptimization_problem.pyfilters.pyfilter_source.pyconnectivity.pywrapper.pyutils.py Byte-compiling python modules (optimized versions) ... __init__.pybasis.pyobjective.pyoptimization_problem.pyfilters.pyfilter_source.pyconnectivity.pywrapper.pyutils.py - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' /usr/bin/install -c -m 644 __init__.py ./binary_partition_utils.py ./chunk_balancer.py ./geom.py ./simulation.py ./source.py ./timing_measurements.py ./visualization.py ./materials.py ./verbosity_mgr.py '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' Byte-compiling python modules... __init__.pybinary_partition_utils.pychunk_balancer.pygeom.pysimulation.pysource.pytiming_measurements.pyvisualization.pymaterials.pyverbosity_mgr.py @@ -11744,132 +11783,167 @@ make[3]: Entering directory '/build/meep-mpi-default-1.25.0' make[4]: Entering directory '/build/meep-mpi-default-1.25.0' make[4]: Nothing to be done for 'install-exec-am'. - /bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' + /usr/bin/mkdir -p '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 meep.pc '/build/meep-mpi-default-1.25.0/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[4]: Leaving directory '/build/meep-mpi-default-1.25.0' make[3]: Leaving directory '/build/meep-mpi-default-1.25.0' make[2]: Leaving directory '/build/meep-mpi-default-1.25.0' find . -./index.md -./configure.ac -./README.md -./config.status -./.flake8 -./libtool -./autogen.sh -./codecov.yml +./config.h.in +./meep-pkgconfig +./config.h ./debian -./debian/control -./debian/not-installed -./debian/libmeep-mpi-default-dev.debhelper.log -./debian/libmeep-mpi-default30.lintian-overrides +./debian/debhelper-build-stamp +./debian/libmeep-mpi-default30.install ./debian/README.source -./debian/meep-mpi-default.manpages -./debian/libmeep-mpi-default30 -./debian/libmeep-mpi-default30/usr -./debian/libmeep-mpi-default30/usr/share -./debian/libmeep-mpi-default30/usr/share/doc -./debian/libmeep-mpi-default30/usr/share/doc/libmeep-mpi-default30 -./debian/libmeep-mpi-default30/usr/share/doc/libmeep-mpi-default30/changelog.Debian -./debian/libmeep-mpi-default30/usr/share/doc/libmeep-mpi-default30/changelog +./debian/python3-meep-mpi-default.debhelper.log +./debian/autoreconf.after +./debian/control +./debian/python3-meep-mpi-default.postinst ./debian/meep-mpi-default.install +./debian/libmeep-mpi-default30.debhelper.log +./debian/python3-meep-mpi-default +./debian/python3-meep-mpi-default/usr +./debian/python3-meep-mpi-default/usr/share +./debian/python3-meep-mpi-default/usr/share/doc +./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default +./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default/changelog.Debian +./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default/changelog +./debian/python3-meep-mpi-default.prerm +./debian/.debhelper +./debian/.debhelper/generated +./debian/.debhelper/generated/python3-meep-mpi-default +./debian/.debhelper/generated/python3-meep-mpi-default/dh_installchangelogs.dch.trimmed +./debian/.debhelper/generated/_source +./debian/.debhelper/generated/_source/home +./debian/.debhelper/generated/_source/home/.cache +./debian/.debhelper/generated/_source/home/.cache/guile +./debian/.debhelper/generated/_source/home/.cache/guile/ccache +./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6 +./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr +./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share +./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share/libctl +./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share/libctl/base +./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share/libctl/base/include.scm.go +./debian/.debhelper/generated/libmeep-mpi-default-dev +./debian/.debhelper/generated/libmeep-mpi-default-dev/dh_installchangelogs.dch.trimmed +./debian/.debhelper/generated/libmeep-mpi-default30 +./debian/.debhelper/generated/libmeep-mpi-default30/dh_installchangelogs.dch.trimmed +./debian/.debhelper/generated/meep-mpi-default +./debian/.debhelper/generated/meep-mpi-default/dh_installchangelogs.dch.trimmed +./debian/python3-meep-mpi-default.install +./debian/not-installed +./debian/meep-mpi-default.debhelper.log +./debian/patches +./debian/patches/i386-fix.patch +./debian/patches/series +./debian/rules +./debian/changelog ./debian/tmp ./debian/tmp/usr ./debian/tmp/usr/bin ./debian/tmp/usr/bin/meep ./debian/tmp/usr/lib -./debian/tmp/usr/lib/i386-linux-gnu -./debian/tmp/usr/lib/i386-linux-gnu/libmeep.a -./debian/tmp/usr/lib/i386-linux-gnu/libmeep.la -./debian/tmp/usr/lib/i386-linux-gnu/pkgconfig -./debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/meep.pc -./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.30 -./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so -./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.30.0.0 ./debian/tmp/usr/lib/python3.11 ./debian/tmp/usr/lib/python3.11/site-packages ./debian/tmp/usr/lib/python3.11/site-packages/meep +./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.so +./debian/tmp/usr/lib/python3.11/site-packages/meep/materials.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/chunk_balancer.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/timing_measurements.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/__init__.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.so.30 ./debian/tmp/usr/lib/python3.11/site-packages/meep/verbosity_mgr.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/source.py ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/wrapper.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/optimization_problem.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__init__.py ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/connectivity.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/filter_source.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/basis.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/utils.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/objective.py ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__ -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/objective.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/connectivity.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/__init__.cpython-311.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/optimization_problem.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/wrapper.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/utils.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/connectivity.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/filter_source.cpython-311.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/optimization_problem.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/connectivity.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/utils.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/filters.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/__init__.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/wrapper.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/objective.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/utils.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/wrapper.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/filters.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/__init__.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/filter_source.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/basis.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/connectivity.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/objective.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/wrapper.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/basis.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/basis.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/objective.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/wrapper.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/filter_source.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/__init__.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__pycache__/filter_source.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/filters.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/__init__.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/basis.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/optimization_problem.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/utils.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/binary_partition_utils.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.la -./debian/tmp/usr/lib/python3.11/site-packages/meep/simulation.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/visualization.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/adjoint/filter_source.py ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__ -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/timing_measurements.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/simulation.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/timing_measurements.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/__init__.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/materials.cpython-311.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/binary_partition_utils.cpython-311.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/materials.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/binary_partition_utils.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/visualization.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/visualization.cpython-311.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/chunk_balancer.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/source.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/geom.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/chunk_balancer.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/verbosity_mgr.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/visualization.cpython-311.opt-1.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/verbosity_mgr.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/binary_partition_utils.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/source.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/source.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/__init__.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/timing_measurements.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/__init__.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/visualization.cpython-311.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/simulation.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/timing_measurements.cpython-311.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/source.cpython-311.pyc ./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/geom.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/chunk_balancer.cpython-311.opt-1.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/materials.cpython-311.pyc -./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/geom.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/__pycache__/__init__.cpython-311.opt-1.pyc +./debian/tmp/usr/lib/python3.11/site-packages/meep/visualization.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.la +./debian/tmp/usr/lib/python3.11/site-packages/meep/geom.py ./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.a -./debian/tmp/usr/lib/python3.11/site-packages/meep/source.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/chunk_balancer.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/simulation.py +./debian/tmp/usr/lib/python3.11/site-packages/meep/binary_partition_utils.py ./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.so.30.0.0 -./debian/tmp/usr/lib/python3.11/site-packages/meep/geom.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/timing_measurements.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.so.30 -./debian/tmp/usr/lib/python3.11/site-packages/meep/materials.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/__init__.py -./debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.so +./debian/tmp/usr/lib/i386-linux-gnu +./debian/tmp/usr/lib/i386-linux-gnu/libmeep.a +./debian/tmp/usr/lib/i386-linux-gnu/libmeep.la +./debian/tmp/usr/lib/i386-linux-gnu/pkgconfig +./debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/meep.pc +./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.30.0.0 +./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.30 +./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so ./debian/tmp/usr/include -./debian/tmp/usr/include/meep.hpp ./debian/tmp/usr/include/meep +./debian/tmp/usr/include/meep/meepgeom.hpp +./debian/tmp/usr/include/meep/adjust_verbosity.hpp ./debian/tmp/usr/include/meep/meep-config.h -./debian/tmp/usr/include/meep/vec.hpp ./debian/tmp/usr/include/meep/material_data.hpp ./debian/tmp/usr/include/meep/mympi.hpp -./debian/tmp/usr/include/meep/adjust_verbosity.hpp -./debian/tmp/usr/include/meep/meepgeom.hpp +./debian/tmp/usr/include/meep/vec.hpp +./debian/tmp/usr/include/meep.hpp ./debian/tmp/usr/share ./debian/tmp/usr/share/meep -./debian/tmp/usr/share/meep/materials.scm -./debian/tmp/usr/share/meep/casimir.scm ./debian/tmp/usr/share/meep/meep.scm ./debian/tmp/usr/share/meep/meep-enums.scm +./debian/tmp/usr/share/meep/materials.scm +./debian/tmp/usr/share/meep/casimir.scm +./debian/meep-mpi-default.docs +./debian/libmeep-mpi-default-dev.install +./debian/meep-mpi-default.manpages +./debian/source +./debian/source/format +./debian/source/lintian-overrides +./debian/libmeep-mpi-default-dev.debhelper.log +./debian/libmeep-mpi-default30.lintian-overrides ./debian/libmeep-mpi-default-dev ./debian/libmeep-mpi-default-dev/usr ./debian/libmeep-mpi-default-dev/usr/share @@ -11877,56 +11951,14 @@ ./debian/libmeep-mpi-default-dev/usr/share/doc/libmeep-mpi-default-dev ./debian/libmeep-mpi-default-dev/usr/share/doc/libmeep-mpi-default-dev/changelog.Debian ./debian/libmeep-mpi-default-dev/usr/share/doc/libmeep-mpi-default-dev/changelog -./debian/meep-mpi-default.debhelper.log -./debian/.debhelper -./debian/.debhelper/generated -./debian/.debhelper/generated/libmeep-mpi-default30 -./debian/.debhelper/generated/libmeep-mpi-default30/dh_installchangelogs.dch.trimmed -./debian/.debhelper/generated/libmeep-mpi-default-dev -./debian/.debhelper/generated/libmeep-mpi-default-dev/dh_installchangelogs.dch.trimmed -./debian/.debhelper/generated/_source -./debian/.debhelper/generated/_source/home -./debian/.debhelper/generated/_source/home/.cache -./debian/.debhelper/generated/_source/home/.cache/guile -./debian/.debhelper/generated/_source/home/.cache/guile/ccache -./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6 -./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr -./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share -./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share/libctl -./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share/libctl/base -./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-4-4.6/usr/share/libctl/base/include.scm.go -./debian/.debhelper/generated/python3-meep-mpi-default -./debian/.debhelper/generated/python3-meep-mpi-default/dh_installchangelogs.dch.trimmed -./debian/.debhelper/generated/meep-mpi-default -./debian/.debhelper/generated/meep-mpi-default/dh_installchangelogs.dch.trimmed -./debian/libmeep-mpi-default-dev.install -./debian/libmeep-mpi-default30.debhelper.log -./debian/debhelper-build-stamp -./debian/meep-mpi-default.docs -./debian/rules -./debian/meep-mpi-default.1 -./debian/patches -./debian/patches/series -./debian/patches/i386-fix.patch -./debian/python3-meep-mpi-default.postinst -./debian/autoreconf.after -./debian/python3-meep-mpi-default.debhelper.log +./debian/libmeep-mpi-default30 +./debian/libmeep-mpi-default30/usr +./debian/libmeep-mpi-default30/usr/share +./debian/libmeep-mpi-default30/usr/share/doc +./debian/libmeep-mpi-default30/usr/share/doc/libmeep-mpi-default30 +./debian/libmeep-mpi-default30/usr/share/doc/libmeep-mpi-default30/changelog.Debian +./debian/libmeep-mpi-default30/usr/share/doc/libmeep-mpi-default30/changelog ./debian/autoreconf.before -./debian/python3-meep-mpi-default.prerm -./debian/docs -./debian/python3-meep-mpi-default -./debian/python3-meep-mpi-default/usr -./debian/python3-meep-mpi-default/usr/share -./debian/python3-meep-mpi-default/usr/share/doc -./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default -./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default/changelog.Debian -./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default/changelog -./debian/watch -./debian/source -./debian/source/format -./debian/source/lintian-overrides -./debian/libmeep-mpi-default30.install -./debian/copyright ./debian/meep-mpi-default ./debian/meep-mpi-default/usr ./debian/meep-mpi-default/usr/share @@ -11934,1226 +11966,1233 @@ ./debian/meep-mpi-default/usr/share/doc/meep-mpi-default ./debian/meep-mpi-default/usr/share/doc/meep-mpi-default/changelog.Debian ./debian/meep-mpi-default/usr/share/doc/meep-mpi-default/changelog -./debian/python3-meep-mpi-default.install -./debian/changelog +./debian/docs +./debian/meep-mpi-default.1 +./debian/watch +./debian/copyright +./.pre-commit-config.yaml +./codemeta.json +./.gitignore +./version.sh +./libtool +./AUTHORS +./src +./src/material_data.lo +./src/near2far.o +./src/dft.lo +./src/mpb.o +./src/array_slice.cpp +./src/cw_fields.cpp +./src/output_directory.cpp +./src/fix_boundary_sources.o +./src/integrate.lo +./src/cw_fields.lo +./src/output_directory.o +./src/step.o +./src/sphere-quad.o +./src/stress.o +./src/output_directory.lo +./src/time.cpp +./src/step_generic.lo +./src/meep +./src/meep/meep-config.h +./src/meep/mympi.hpp +./src/meep/meep-config.h.in +./src/meep/vec.hpp +./src/structure_dump.o +./src/susceptibility.cpp +./src/fields_dump.lo +./src/meepgeom.cpp +./src/step_db.o +./src/multilevel-atom.cpp +./src/energy_and_flux.o +./src/dft.cpp +./src/dft_ldos.lo +./src/boundaries.cpp +./src/multilevel-atom.lo +./src/GDSIIgeom.cpp +./src/susceptibility.o +./src/array_slice.lo +./src/step.cpp +./src/libmeep.la +./src/sources.lo +./src/mympi.lo +./src/initialize.cpp +./src/near2far.lo +./src/sphere_quad +./src/bands.cpp +./src/mympi.cpp +./src/step_generic_stride1.cpp +./src/bands.o +./src/h5file.o +./src/initialize.o +./src/fields_dump.o +./src/meepgeom.hpp +./src/sphere-quad.h +./src/vec.cpp +./src/sphere-quad.cpp +./src/integrate2.cpp +./src/susceptibility.lo +./src/update_pols.lo +./src/anisotropic_averaging.cpp +./src/fields.cpp +./src/casimir.cpp +./src/time.lo +./src/initialize.lo +./src/stress.cpp +./src/h5file.lo +./src/loop_in_chunks.cpp +./src/step_db.lo +./src/bicgstab.cpp +./src/monitor.lo +./src/loop_in_chunks.lo +./src/multilevel-atom.o +./src/integrate.cpp +./src/bands.lo +./src/material_data.o +./src/boundaries.o +./src/fields_dump.cpp +./src/structure.cpp +./src/meep_internals.hpp +./src/random.lo +./src/time.o +./src/cw_fields.o +./src/mympi.o +./src/mpb.cpp +./src/adjust_verbosity.hpp +./src/step_db.cpp +./src/anisotropic_averaging.lo +./src/bicgstab.lo +./src/material_data.cpp +./src/update_pols.cpp +./src/h5fields.cpp +./src/h5file.cpp +./src/fields.lo +./src/update_eh.cpp +./src/dft_ldos.cpp +./src/GDSIIgeom.lo +./src/stress.lo +./src/bicgstab.o +./src/sources.cpp +./src/Makefile +./src/Makefile.am +./src/random.o +./src/.libs +./src/.libs/near2far.o +./src/.libs/mpb.o +./src/.libs/fix_boundary_sources.o +./src/.libs/output_directory.o +./src/.libs/step.o +./src/.libs/libmeep.a +./src/.libs/stress.o +./src/.libs/structure_dump.o +./src/.libs/libmeep.lai +./src/.libs/step_db.o +./src/.libs/energy_and_flux.o +./src/.libs/susceptibility.o +./src/.libs/libmeep.la +./src/.libs/bands.o +./src/.libs/h5file.o +./src/.libs/initialize.o +./src/.libs/fields_dump.o +./src/.libs/multilevel-atom.o +./src/.libs/material_data.o +./src/.libs/boundaries.o +./src/.libs/time.o +./src/.libs/cw_fields.o +./src/.libs/mympi.o +./src/.libs/libmeep.so.30.0.0 +./src/.libs/bicgstab.o +./src/.libs/random.o +./src/.libs/h5fields.o +./src/.libs/structure.o +./src/.libs/update_eh.o +./src/.libs/vec.o +./src/.libs/sources.o +./src/.libs/loop_in_chunks.o +./src/.libs/dft_ldos.o +./src/.libs/integrate2.o +./src/.libs/libmeep.so.30 +./src/.libs/update_pols.o +./src/.libs/casimir.o +./src/.libs/array_slice.o +./src/.libs/step_generic_stride1.o +./src/.libs/integrate.o +./src/.libs/GDSIIgeom.o +./src/.libs/meepgeom.o +./src/.libs/dft.o +./src/.libs/anisotropic_averaging.o +./src/.libs/fields.o +./src/.libs/step_generic.o +./src/.libs/libmeep.so +./src/.libs/monitor.o +./src/structure_dump.cpp +./src/meepgeom.lo +./src/h5fields.o +./src/step.lo +./src/structure.o +./src/meep.hpp +./src/fix_boundary_sources.lo +./src/material_data.hpp +./src/support +./src/support/meep_mt.h +./src/support/Makefile +./src/support/Makefile.am +./src/support/mt19937ar.lo +./src/support/.libs +./src/support/.libs/libsupport.a +./src/support/.libs/libsupport.la +./src/support/.libs/mt19937ar.o +./src/support/Makefile.in +./src/support/mt19937ar.c +./src/support/libsupport.la +./src/support/mt19937ar.o +./src/Makefile.in +./src/update_eh.o +./src/step_generic.cpp +./src/vec.o +./src/sources.o +./src/loop_in_chunks.o +./src/dft_ldos.o +./src/integrate2.o +./src/update_eh.lo +./src/mpb.lo +./src/update_pols.o +./src/structure_dump.lo +./src/casimir.o +./src/array_slice.o +./src/step_generic_stride1.o +./src/step_generic_stride1.lo +./src/integrate.o +./src/random.cpp +./src/fix_boundary_sources.cpp +./src/GDSIIgeom.o +./src/meepgeom.o +./src/structure.lo +./src/vec.lo +./src/dft.o +./src/casimir.lo +./src/anisotropic_averaging.o +./src/fields.o +./src/integrate2.lo +./src/energy_and_flux.cpp +./src/bicgstab.hpp +./src/step_generic.o +./src/h5fields.lo +./src/monitor.o +./src/near2far.cpp +./src/monitor.cpp +./src/boundaries.lo +./src/energy_and_flux.lo +./add_type_hints.xonsh +./codecov.yml ./m4 -./m4/ax_check_compiler_flags.m4 -./m4/ax_lapack.m4 -./m4/libtool.m4 -./m4/ax_gcc_x86_cpuid.m4 -./m4/pkg.m4 ./m4/ax_cxx_maxopt.m4 -./m4/ax_openmp.m4 ./m4/ax_compiler_vendor.m4 -./m4/ax_mpi.m4 -./m4/ltoptions.m4 ./m4/ltversion.m4 -./m4/ax_blas.m4 ./m4/lt~obsolete.m4 -./m4/ax_gcc_archflag.m4 ./m4/ax_cxx_compile_stdcxx.m4 +./m4/ax_check_compiler_flags.m4 +./m4/ltoptions.m4 +./m4/ax_openmp.m4 ./m4/ltsugar.m4 -./compile -./aclocal.m4 -./mkdocs.yml -./.mailmap +./m4/ax_gcc_archflag.m4 +./m4/pkg.m4 +./m4/libtool.m4 +./m4/ax_blas.m4 +./m4/ax_gcc_x86_cpuid.m4 +./m4/ax_mpi.m4 +./m4/ax_lapack.m4 +./configure +./.gitattributes +./meep.pc +./.clang-format +./COPYRIGHT +./.flake8 +./.sourcery.yaml ./python -./python/test-suite.log -./python/verbosity_mgr.py -./python/adjoint -./python/adjoint/connectivity.py -./python/adjoint/filter_source.py -./python/adjoint/objective.py -./python/adjoint/wrapper.py -./python/adjoint/filters.py -./python/adjoint/__init__.py -./python/adjoint/basis.py -./python/adjoint/optimization_problem.py -./python/adjoint/utils.py -./python/binary_partition_utils.py -./python/_meep.la -./python/simulation.py -./python/numpy.i -./python/solver.py -./python/visualization.py -./python/Makefile.am -./python/meep.i -./python/source.py -./python/chunk_balancer.py -./python/mpb.i -./python/requirements.txt -./python/tests -./python/tests/test_cavity_farfield.log -./python/tests/test_user_defined_material.log -./python/tests/test_geom.log -./python/tests/test_holey_wvg_bands.trs -./python/tests/test_field_functions.py -./python/tests/test_simulation.log -./python/tests/test_chunk_layout.py -./python/tests/test_chunk_balancer.py -./python/tests/test_binary_partition_utils.trs -./python/tests/test_adjoint_solver.py -./python/tests/test_binary_partition_utils.py -./python/tests/test_chunk_balancer.log -./python/tests/test_absorber_1d.log -./python/tests/test_adjoint_cyl.py -./python/tests/test_divide_mpi_processes.trs -./python/tests/test_eigfreq.py -./python/tests/test_dft_fields.trs -./python/tests/test_bend_flux.py -./python/tests/test_dump_load.trs -./python/tests/test_adjoint_cyl.log -./python/tests/test_cyl_ellipsoid.trs -./python/tests/test_diffracted_planewave.py -./python/tests/test_chunk_balancer.trs -./python/tests/test_simulation.py -./python/tests/test_multilevel_atom.log -./python/tests/test_ldos.trs -./python/tests/test_ring_cyl.trs -./python/tests/test_adjoint_jax.py -./python/tests/test_adjoint_jax.trs -./python/tests/test_chunks.log -./python/tests/test_ldos.py -./python/tests/test_holey_wvg_bands.py -./python/tests/test_integrated_source.py -./python/tests/test_cyl_ellipsoid.py -./python/tests/test_integrated_source.trs -./python/tests/test_gaussianbeam.log -./python/tests/test_adjoint_solver.log -./python/tests/data -./python/tests/data/tutorial-te-eigenvectors-3-3.h5 -./python/tests/data/tutorial-d.k01.b02.te.h5 -./python/tests/data/tutorial-te-eigenvectors-8-1.h5 -./python/tests/data/spiral.gds -./python/tests/data/subpixel_avg-epsilon.h5 -./python/tests/data/cavity-farfield-4-freqs.h5 -./python/tests/data/bragg-h.k01.b08.y.tm.h5 -./python/tests/data/nonconvex_prism_vertices1.npz -./python/tests/data/converted-diamond-dpwr.k06.b05.h5 -./python/tests/data/amp_func_file.h5 -./python/tests/data/hole-slab-h.k01.b09.z.zeven.h5 -./python/tests/data/bend-flux.gds -./python/tests/data/tutorial-h.k16.b08.te.h5 -./python/tests/data/cavity_arrayslice_2d.npy -./python/tests/data/cavity_arrayslice_1d.npy -./python/tests/data/tutorial-d.k16.b02.te.h5 -./python/tests/data/tutorial-e.k16.b08.te.h5 -./python/tests/data/tutorial-te-eigenvectors.h5 -./python/tests/data/diamond-dpwr.k06.b05.h5 -./python/tests/data/nonconvex_prism_vertices3.npz -./python/tests/data/tutorial-mu.h5 -./python/tests/data/tutorial-d.k16.b08.te.h5 -./python/tests/data/tutorial-e.k16.b08.z.tm.h5 -./python/tests/data/tutorial-flux.v.k11.b08.te.h5 -./python/tests/data/eps_input_file_test.h5 -./python/tests/data/tutorial-tot.rpwr.k16.b08.te.h5 -./python/tests/data/convex_prism_vertices.npz -./python/tests/data/tutorial-b.k16.b08.te.h5 -./python/tests/data/line-defect-e.k04.b12.z.tm.h5 -./python/tests/data/tutorial-epsilon.h5 -./python/tests/data/converted-tri-rods-e.k11.b08.tm.h5 -./python/tests/data/tri-rods-e.k11.b08.z.tm-r-m3-n32.h5 -./python/tests/data/cavity-farfield.h5 -./python/tests/data/strip-flux.v.k01.b04.x.h5 -./python/tests/data/tri-rods-epsilon-r-m3-n32.h5 -./python/tests/data/tri-rods-e.k11.b08.z.tm.h5 -./python/tests/data/tutorial-C.k16.b08.te.h5 -./python/tests/data/nonconvex_prism_vertices2.npz -./python/tests/test_adjoint_jax.log -./python/tests/test_dispersive_eigenmode.py -./python/tests/test_dft_fields.py -./python/tests/test_physical.trs -./python/tests/test_mode_coeffs.py -./python/tests/test_medium_evaluations.trs -./python/tests/test_faraday_rotation.log -./python/tests/test_materials_library.py -./python/tests/test_oblique_source.log -./python/tests/test_3rd_harm_1d.trs -./python/tests/test_material_grid.py -./python/tests/test_field_functions.trs -./python/tests/test_timing_measurements.log -./python/tests/test_field_functions.log -./python/tests/test_eigfreq.trs -./python/tests/test_multilevel_atom.py -./python/tests/test_gaussianbeam.py -./python/tests/test_mode_decomposition.py -./python/tests/test_user_defined_material.trs -./python/tests/test_prism.py -./python/tests/__pycache__ -./python/tests/__pycache__/utils.cpython-311.pyc -./python/tests/test_materials_library.log -./python/tests/test_kdom.py -./python/tests/test_force.log -./python/tests/test_ldos.log -./python/tests/test_adjoint_solver.trs -./python/tests/test_binary_partition_utils.log -./python/tests/test_user_defined_material.py -./python/tests/test_absorber_1d.py -./python/tests/test_source.log -./python/tests/test_ring.py -./python/tests/test_binary_grating.py -./python/tests/test_get_point.trs -./python/tests/test_chunk_layout.trs -./python/tests/test_physical.log -./python/tests/test_timing_measurements.trs -./python/tests/test_dump_load.py -./python/tests/test_get_point.log -./python/tests/test_array_metadata.py -./python/tests/test_physical.py -./python/tests/test_fragment_stats.log -./python/tests/test_source.trs -./python/tests/test_wvg_src.py -./python/tests/test_ring.log -./python/tests/test_divide_mpi_processes.py -./python/tests/test_cavity_arrayslice.trs -./python/tests/test_visualization.py -./python/tests/test_simulation.trs -./python/tests/test_material_grid.log -./python/tests/test_integrated_source.log -./python/tests/test_adjoint_utils.log -./python/tests/test_prism.trs 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-./src/.libs/libmeep.so.30.0.0 -./src/.libs/energy_and_flux.o -./src/.libs/step_generic.o -./src/.libs/material_data.o -./src/initialize.cpp -./src/h5file.cpp -./src/update_pols.cpp -./src/dft.o -./src/fields.cpp -./src/fields_dump.o -./src/monitor.o -./src/anisotropic_averaging.lo -./src/Makefile -./src/dft.lo -./src/dft_ldos.cpp -./src/meepgeom.o -./src/adjust_verbosity.hpp -./src/sphere-quad.o -./src/Makefile.in -./src/structure_dump.o -./src/cw_fields.cpp -./src/mpb.o -./src/meep_internals.hpp -./src/bicgstab.lo -./src/meepgeom.hpp -./src/integrate2.cpp -./src/cw_fields.lo -./src/near2far.o -./src/dft.cpp -./src/h5file.lo -./src/bicgstab.cpp -./src/mpb.lo -./src/multilevel-atom.cpp -./src/energy_and_flux.o -./src/bicgstab.hpp -./src/step_generic_stride1.lo -./src/sources.cpp -./src/step_generic.o -./src/stress.cpp -./src/material_data.o -./src/material_data.lo -./src/near2far.lo -./src/monitor.cpp -./NEWS.md -./Makefile +./tests/dump_load +./tests/one_dimensional.o +./tests/three_d.trs +./tests/near2far.cpp +./tests/flux.o +./tests/array-slice-ll.o +./tests/physical.o +./tests/bragg_transmission +./tests/bench.o ./scheme -./scheme/materials.scm -./scheme/meep_wrap.cxx.bak -./scheme/meep_wrap.cxx.orig -./scheme/structure.cpp -./scheme/meep-ctl-io.o -./scheme/casimir.scm +./scheme/meep_enum_renames.i +./scheme/meep_swig_bug_workaround.i ./scheme/meep_wrap.patch -./scheme/meep.cpp -./scheme/Makefile.am -./scheme/meep-ctl.hpp -./scheme/meep.scm.in ./scheme/meep-meep.o -./scheme/meep.i -./scheme/ctl-io.i -./scheme/meep-meep_wrap.o -./scheme/ctl-io.h -./scheme/meep_swig_bug_workaround.i +./scheme/meep +./scheme/meep-ctl-io.o +./scheme/meep-structure.o ./scheme/meep.scm -./scheme/meep_renames.i -./scheme/meep-enums.scm ./scheme/meep-main.o -./scheme/meep-geom.o -./scheme/meep-ctl-swig.hpp -./scheme/meep-structure.o -./scheme/main.cpp -./scheme/meep +./scheme/meep.cpp +./scheme/meep-enums.scm +./scheme/meep_op_renames.i +./scheme/materials.scm +./scheme/ctl-io.cpp +./scheme/meep_renames.i +./scheme/meep-ctl.hpp +./scheme/structure.cpp +./scheme/meep-ctl-const.hpp +./scheme/meep.i +./scheme/Makefile +./scheme/Makefile.am ./scheme/.libs ./scheme/.libs/meep -./scheme/ctl-io.cpp +./scheme/meep-geom.o +./scheme/geom.cpp +./scheme/main.cpp +./scheme/ctl-io.h +./scheme/Makefile.in +./scheme/meep_wrap.cxx.bak +./scheme/meep.scm.in +./scheme/meep_wrap.cxx.orig +./scheme/meep-meep_wrap.o ./scheme/examples -./scheme/examples/ring.ctl -./scheme/examples/finite_grating.ctl -./scheme/examples/material-dispersion.ctl -./scheme/examples/zone-plate.ctl -./scheme/examples/refl-angular-kz2d.ctl -./scheme/examples/gaussian-beam.ctl -./scheme/examples/cherenkov-radiation.ctl -./scheme/examples/absorbed-power-density.ctl ./scheme/examples/metasurface_lens_farfield.ctl -./scheme/examples/mie-scattering.ctl +./scheme/examples/metal-cavity-ldos.ctl +./scheme/examples/group-velocity.ctl ./scheme/examples/binary_grating_n2f.ctl -./scheme/examples/stochastic-emitter.ctl -./scheme/examples/perturbation-theory.ctl -./scheme/examples/pw-source.ctl -./scheme/examples/oblique-planewave.ctl -./scheme/examples/bend-flux.ctl -./scheme/examples/refl-quartz.ctl -./scheme/examples/3rd-harm-1d.ctl -./scheme/examples/mode-decomposition.ctl +./scheme/examples/binary_grating.ctl +./scheme/examples/holey-wvg-bands.ctl ./scheme/examples/parallel-wvgs-mpb.ctl +./scheme/examples/metasurface_lens_phasemap.ctl +./scheme/examples/refl-quartz.ctl +./scheme/examples/antenna-radiation.ctl +./scheme/examples/pw-source.ctl +./scheme/examples/absorbed-power-density.ctl ./scheme/examples/cavity-farfield.ctl -./scheme/examples/solve-cw.ctl -./scheme/examples/wvg_src.ctl -./scheme/examples/binary_grating.ctl -./scheme/examples/polarization_grating.ctl -./scheme/examples/multilevel-atom.ctl +./scheme/examples/binary_grating_oblique.ctl +./scheme/examples/perturbation-theory-2d.ctl +./scheme/examples/finite_grating.ctl +./scheme/examples/stochastic-emitter.ctl +./scheme/examples/chirped-pulse.ctl ./scheme/examples/differential-cross-section.ctl -./scheme/examples/ring-cyl.ctl -./scheme/examples/faraday-rotation.ctl +./scheme/examples/multilevel-atom.ctl ./scheme/examples/bent-waveguide.ctl -./scheme/examples/refl-angular.ctl -./scheme/examples/parallel-wvgs-force.ctl -./scheme/examples/metal-cavity-ldos.ctl -./scheme/examples/binary_grating_oblique.ctl -./scheme/examples/holey-wvg-cavity.ctl ./scheme/examples/straight-waveguide.ctl +./scheme/examples/mie-scattering.ctl +./scheme/examples/ring-cyl.ctl +./scheme/examples/3rd-harm-1d.ctl +./scheme/examples/binary_grating_phasemap.ctl +./scheme/examples/mode-coeffs.ctl +./scheme/examples/ring.ctl +./scheme/examples/refl-angular.ctl +./scheme/examples/gaussian-beam.ctl +./scheme/examples/faraday-rotation.ctl +./scheme/examples/perturbation-theory.ctl +./scheme/examples/zone-plate.ctl ./scheme/examples/cylinder-cross-section.ctl -./scheme/examples/holey-wvg-bands.ctl +./scheme/examples/oblique-planewave.ctl +./scheme/examples/polarization_grating.ctl +./scheme/examples/cherenkov-radiation.ctl +./scheme/examples/mode-decomposition.ctl +./scheme/examples/parallel-wvgs-force.ctl +./scheme/examples/material-dispersion.ctl ./scheme/examples/oblique-source.ctl -./scheme/examples/metasurface_lens_phasemap.ctl -./scheme/examples/mode-coeffs.ctl -./scheme/examples/group-velocity.ctl -./scheme/examples/perturbation-theory-2d.ctl -./scheme/examples/chirped-pulse.ctl -./scheme/examples/antenna-radiation.ctl -./scheme/examples/binary_grating_phasemap.ctl -./scheme/meep_enum_renames.i -./scheme/Makefile -./scheme/geom.cpp -./scheme/Makefile.in -./scheme/meep_op_renames.i -./scheme/meep-ctl-const.hpp +./scheme/examples/wvg_src.ctl +./scheme/examples/bend-flux.ctl +./scheme/examples/solve-cw.ctl +./scheme/examples/refl-angular-kz2d.ctl +./scheme/examples/holey-wvg-cavity.ctl +./scheme/meep-ctl-swig.hpp +./scheme/casimir.scm +./scheme/ctl-io.i ./scheme/meep_wrap.cxx -./Makefile.in -./COPYRIGHT -./config.guess -./.sourcery.yaml -./.gitattributes +./install-sh +./autogen.sh +./missing +./TODO +./py-compile ./libpympb -./libpympb/Makefile.am ./libpympb/pympb.hpp ./libpympb/Makefile -./libpympb/pympb.cpp +./libpympb/Makefile.am ./libpympb/Makefile.in -./AUTHORS -./autom4te.cache -./autom4te.cache/traces.1 -./autom4te.cache/requests -./autom4te.cache/output.1 -./autom4te.cache/output.3 -./autom4te.cache/output.2 -./autom4te.cache/traces.3 -./autom4te.cache/traces.2 -./autom4te.cache/output.0 -./autom4te.cache/traces.0 +./libpympb/pympb.cpp +./config.guess +./configure.ac rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyc rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyo rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.a @@ -13180,19 +13219,19 @@ dh_strip -a dh_makeshlibs -a dh_shlibdeps -a -dpkg-shlibdeps: warning: debian/python3-meep-mpi-default/usr/lib/python3/dist-packages/meep/_meep.so.30.0.0 contains an unresolvable reference to symbol PyExc_SystemError: it's probably a plugin +dpkg-shlibdeps: warning: debian/python3-meep-mpi-default/usr/lib/python3/dist-packages/meep/_meep.so.30.0.0 contains an unresolvable reference to symbol PyObject_Call: it's probably a plugin dpkg-shlibdeps: warning: 106 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'meep-mpi-default-dbgsym' in '../meep-mpi-default-dbgsym_1.25.0-2_i386.deb'. -dpkg-deb: building package 'libmeep-mpi-default-dev' in '../libmeep-mpi-default-dev_1.25.0-2_i386.deb'. +dpkg-deb: building package 'meep-mpi-default' in '../meep-mpi-default_1.25.0-2_i386.deb'. +dpkg-deb: building package 'libmeep-mpi-default30-dbgsym' in '../libmeep-mpi-default30-dbgsym_1.25.0-2_i386.deb'. dpkg-deb: building package 'libmeep-mpi-default30' in '../libmeep-mpi-default30_1.25.0-2_i386.deb'. +dpkg-deb: building package 'libmeep-mpi-default-dev' in '../libmeep-mpi-default-dev_1.25.0-2_i386.deb'. dpkg-deb: building package 'python3-meep-mpi-default' in '../python3-meep-mpi-default_1.25.0-2_i386.deb'. -dpkg-deb: building package 'meep-mpi-default' in '../meep-mpi-default_1.25.0-2_i386.deb'. dpkg-deb: building package 'python3-meep-mpi-default-dbgsym' in '../python3-meep-mpi-default-dbgsym_1.25.0-2_i386.deb'. -dpkg-deb: building package 'libmeep-mpi-default30-dbgsym' in '../libmeep-mpi-default30-dbgsym_1.25.0-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../meep-mpi-default_1.25.0-2_i386.buildinfo dpkg-genchanges --build=binary -O../meep-mpi-default_1.25.0-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -13200,12 +13239,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12062/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/10875 and its subdirectories -I: Current time: Fri May 19 13:33:43 -12 2023 -I: pbuilder-time-stamp: 1684546423 +I: removing directory /srv/workspace/pbuilder/12062 and its subdirectories +I: Current time: Fri Jun 21 22:13:14 +14 2024 +I: pbuilder-time-stamp: 1718957594