Diff of the two buildlogs: -- --- b1/build.log 2023-06-06 11:30:20.085701198 +0000 +++ b2/build.log 2023-06-06 11:31:42.698085762 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 5 23:21:26 -12 2023 -I: pbuilder-time-stamp: 1686050486 +I: Current time: Tue Jul 9 07:53:18 +14 2024 +I: pbuilder-time-stamp: 1720461198 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./hyphy_2.5.47+dfsg.orig.tar.xz] I: copying [./hyphy_2.5.47+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Feb 5 07:59:50 2023 -12 +gpgv: Signature made Mon Feb 6 09:59:50 2023 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,137 +31,169 @@ dpkg-source: info: applying set-zlib-after-setting-default-libs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21509/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 9 07:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='33fcff3c18184ad49501d31133e9db77' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21509' - PS1='# ' - PS2='> ' + INVOCATION_ID=04e8c2ff9f20437191ea8c8f348c952a + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=102132 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rr9ORAsl/pbuilderrc_8QcV --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rr9ORAsl/b1 --logfile b1/build.log hyphy_2.5.47+dfsg-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rr9ORAsl/pbuilderrc_U32R --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rr9ORAsl/b2 --logfile b2/build.log --extrapackages usrmerge hyphy_2.5.47+dfsg-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 5.10.0-23-686-pae #1 SMP Debian 5.10.179-1 (2023-05-12) i686 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 6036 - -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more - -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount - -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/21509/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Apr 24 2023 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 2023 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 2023 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 2023 more + -rwsr-xr-x 1 root root 58912 Mar 24 2023 mount + -rwxr-xr-x 1 root root 13856 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jul 9 07:53 sh -> /bin/bash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 2023 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 598456 Apr 7 2023 tar + -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 2023 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -320,7 +352,7 @@ Get: 106 http://deb.debian.org/debian bookworm/main i386 pkgconf-bin i386 1.8.1-1 [29.8 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 pkgconf i386 1.8.1-1 [25.9 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 pkg-config i386 1.8.1-1 [13.7 kB] -Fetched 64.3 MB in 2s (26.9 MB/s) +Fetched 64.3 MB in 1s (94.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19599 files and directories currently installed.) @@ -770,8 +802,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/hyphy-2.5.47+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hyphy_2.5.47+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/hyphy-2.5.47+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hyphy_2.5.47+dfsg-1_source.changes dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.5.47+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -781,9 +824,9 @@ debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten dh_auto_clean -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary @@ -791,7 +834,7 @@ dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten dh_auto_configure -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON .. -- The C compiler identification is GNU 12.2.0 @@ -843,9 +886,9 @@ -- Build files have been written to: /build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen debian/rules override_dh_auto_build -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten # convert a few ISO-8859-1 files to address national-encoding set -e \ ; for file in res/TemplateBatchFiles/PARRIS.bf res/TemplateBatchFiles/TemplateModels/MEC.mdl res/TemplateBatchFiles/TemplateModels/models.lst \ @@ -853,50 +896,50 @@ ; mv "${file}.new" "${file}" \ ; done dh_auto_build -- MP MPI - cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 -make[2]: Entering directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' + cd obj-i686-linux-gnu && make -j15 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 +make[2]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/hyphy-2.5.47+dfsg -B/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP -make[3]: Entering directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[3]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/hyphy-2.5.47+dfsg -B/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu --check-build-system 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-I/build/hyphy-2.5.47+dfsg/src/core/include -I/build/hyphy-2.5.47+dfsg/src/contrib -I/build/hyphy-2.5.47+dfsg/src/lib/Link -I/build/hyphy-2.5.47+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -g -msse4.1 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -c /build/hyphy-2.5.47+dfsg/src/core/category.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/hyphy-2.5.47+dfsg/src/core/include -I/build/hyphy-2.5.47+dfsg/src/contrib -I/build/hyphy-2.5.47+dfsg/src/lib/Link -I/build/hyphy-2.5.47+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -g -msse4.1 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -c /build/hyphy-2.5.47+dfsg/src/core/constant.cpp @@ -1088,8 +1131,8 @@ [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/hyphy-2.5.47+dfsg/src/core/include -I/build/hyphy-2.5.47+dfsg/src/contrib -I/build/hyphy-2.5.47+dfsg/src/lib/Link -I/build/hyphy-2.5.47+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -g -msse4.1 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -c /build/hyphy-2.5.47+dfsg/src/core/likefuncocl.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/hyphy-2.5.47+dfsg/src/core/include -I/build/hyphy-2.5.47+dfsg/src/contrib -I/build/hyphy-2.5.47+dfsg/src/lib/Link -I/build/hyphy-2.5.47+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -g -msse4.1 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/hyphy-2.5.47+dfsg/src/core/list.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/hyphy-2.5.47+dfsg/src/core/include -I/build/hyphy-2.5.47+dfsg/src/contrib -I/build/hyphy-2.5.47+dfsg/src/lib/Link -I/build/hyphy-2.5.47+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -g -msse4.1 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/hyphy-2.5.47+dfsg/src/core/list.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/hyphy-2.5.47+dfsg/src/core/include -I/build/hyphy-2.5.47+dfsg/src/contrib -I/build/hyphy-2.5.47+dfsg/src/lib/Link -I/build/hyphy-2.5.47+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -g -msse4.1 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -c /build/hyphy-2.5.47+dfsg/src/core/mathobj.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/hyphy-2.5.47+dfsg/src/core/include -I/build/hyphy-2.5.47+dfsg/src/contrib -I/build/hyphy-2.5.47+dfsg/src/lib/Link -I/build/hyphy-2.5.47+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -g -msse4.1 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /build/hyphy-2.5.47+dfsg/src/core/matrix.cpp @@ -1162,32 +1205,32 @@ [100%] Linking CXX executable HYPHYMPI /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMPI.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hyphy-2.5.47+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -std=c++14 -g -msse4.1 -g CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI -Wl,-rpath,/usr/lib/i386-linux-gnu/openmpi/lib: -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 -lz /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic -make[5]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen [100%] Built target HYPHYMPI make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird betreten cd /build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.47+dfsg /build/hyphy-2.5.47+dfsg /build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu/CMakeFiles/MPI.dir/DependInfo.cmake --color= -make[5]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/build -make[5]: Entering directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' -make[5]: Nothing to be done for 'CMakeFiles/MPI.dir/build'. -make[5]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird betreten +make[5]: Für das Ziel „CMakeFiles/MPI.dir/build“ ist nichts zu tun. +make[5]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen [100%] Built target MPI -make[4]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[4]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu/CMakeFiles 0 -make[3]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' -make[2]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[3]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen +make[2]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen debian/rules override_dh_auto_test -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten find "obj-i686-linux-gnu/" \ -not -path "*/CMakeFiles/*" \ -type f,l \ -executable \ -exec cp -v '{}' . \; 'obj-i686-linux-gnu/HYPHYMP' -> './HYPHYMP' -'obj-i686-linux-gnu/hyphy' -> './hyphy' 'obj-i686-linux-gnu/HYPHYMPI' -> './HYPHYMPI' +'obj-i686-linux-gnu/hyphy' -> './hyphy' ./run_unit_tests.sh ./tests/hbltests/UnitTests/HBLCommands/Abs.bf ./tests/hbltests/UnitTests/HBLCommands/Add.bf @@ -1291,523 +1334,523 @@ ./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf ./tests/hbltests/UnitTests/HBLCommands/namespace.bf \n\n------------------------ALL TEST PASSED------------------------------------\n -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/hyphy-2.5.47\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' + cd obj-i686-linux-gnu && make -j15 install DESTDIR=/build/hyphy-2.5.47\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/hyphy-2.5.47+dfsg -B/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[2]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird betreten +make[2]: Für das Ziel „preinstall“ ist nichts zu tun. +make[2]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf --- Installing: 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/build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules --- Installing: 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/build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DirectionalREL.bf --- Installing: 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/build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl +-- Installing: 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Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod --- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf +-- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector.bf -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/bin/hyphy -- Installing: /build/hyphy-2.5.47+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set runtime path of "/build/hyphy-2.5.47+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg/obj-i686-linux-gnu“ wird verlassen debian/rules override_dh_install-arch -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten dh_install -a chrpath --delete obj-*/HYPHYMPI -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen debian/rules override_dh_install-indep -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten dh_install -i -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen debian/rules override_dh_installdocs-arch -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten dh_installdocs -a for news in debian/NEWS.Debian.* ; do \ pkg=`echo ${news} | sed 's/.*NEWS.Debian.//'` ; \ cp -a ${news} debian/${pkg}/usr/share/doc/${pkg}/NEWS.Debian ; \ done -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen debian/rules override_dh_installdocs-indep -make[1]: Entering directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird betreten dh_installdocs -i -make[1]: Leaving directory '/build/hyphy-2.5.47+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.47+dfsg“ wird verlassen dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake @@ -1827,11 +1870,11 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.47+dfsg-1_i386.deb'. -dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.47+dfsg-1_i386.deb'. -dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.47+dfsg-1_i386.deb'. -dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.47+dfsg-1_i386.deb'. -dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.47+dfsg-1_all.deb'. +dpkg-deb: Paket »hyphy-pt« wird in »../hyphy-pt_2.5.47+dfsg-1_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-pt-dbgsym« wird in »../hyphy-pt-dbgsym_2.5.47+dfsg-1_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-mpi« wird in »../hyphy-mpi_2.5.47+dfsg-1_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-mpi-dbgsym« wird in »../hyphy-mpi-dbgsym_2.5.47+dfsg-1_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-common« wird in »../hyphy-common_2.5.47+dfsg-1_all.deb« gebaut. dpkg-genbuildinfo --build=binary -O../hyphy_2.5.47+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../hyphy_2.5.47+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1839,12 +1882,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/102132/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21509 and its subdirectories -I: Current time: Mon Jun 5 23:30:18 -12 2023 -I: pbuilder-time-stamp: 1686051018 +I: removing directory /srv/workspace/pbuilder/102132 and its subdirectories +I: Current time: Tue Jul 9 07:54:39 +14 2024 +I: pbuilder-time-stamp: 1720461279