Diff of the two buildlogs: -- --- b1/build.log 2023-05-12 21:32:11.399062665 +0000 +++ b2/build.log 2023-05-12 21:32:55.445133971 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 12 09:30:11 -12 2023 -I: pbuilder-time-stamp: 1683927011 +I: Current time: Fri Jun 14 17:55:12 +14 2024 +I: pbuilder-time-stamp: 1718337312 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./fastaq_3.17.0.orig.tar.gz] I: copying [./fastaq_3.17.0-5.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Oct 8 01:48:22 2022 -12 +gpgv: Signature made Sun Oct 9 03:48:22 2022 +14 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastaq_3.17.0-5.dsc: no acceptable signature found @@ -28,137 +28,169 @@ dpkg-source: info: applying tests I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18952/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 14 17:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='6716f1eb8c314a47a1d27bd5a2d33944' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18952' - PS1='# ' - PS2='> ' + INVOCATION_ID=cdff670713bc472b9e6211e23714b8e7 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10082 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wUHXslai/pbuilderrc_qRXL --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wUHXslai/b1 --logfile b1/build.log fastaq_3.17.0-5.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wUHXslai/pbuilderrc_dfrD --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wUHXslai/b2 --logfile b2/build.log --extrapackages usrmerge fastaq_3.17.0-5.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 5.10.0-22-686-pae #1 SMP Debian 5.10.178-3 (2023-04-22) i686 GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 6036 - -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more - -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount - -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/18952/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Apr 24 2023 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 2023 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 2023 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 2023 more + -rwsr-xr-x 1 root root 58912 Mar 24 2023 mount + -rwxr-xr-x 1 root root 13856 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 14 17:55 sh -> /bin/bash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 2023 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 598456 Apr 7 2023 tar + -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 2023 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -277,7 +309,7 @@ Get: 67 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 samtools i386 1.16.1-1 [637 kB] -Fetched 29.3 MB in 9s (3319 kB/s) +Fetched 29.3 MB in 8s (3500 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -569,8 +601,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastaq_3.17.0-5_source.changes +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fastaq_3.17.0-5_source.changes dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-5 dpkg-buildpackage: info: source distribution unstable @@ -625,54 +668,54 @@ running build running build_py creating /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/utils.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/caf.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/tasks.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/intervals.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/sequences.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/caf.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/intervals.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/utils.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq creating /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/version.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/version.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.11 @@ -711,8 +754,8 @@ gbk_regex = re.compile('^LOCUS\s+\S') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -======================= 125 passed, 2 warnings in 1.24s ======================== - rm -fr -- /tmp/dh-xdg-rundir-fs_YywNB +======================= 125 passed, 2 warnings in 0.39s ======================== + rm -fr -- /tmp/dh-xdg-rundir-XdFNQlGd make[1]: Leaving directory '/build/fastaq-3.17.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -735,101 +778,101 @@ creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11 creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/tasks.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/version.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/version.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/utils.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/caf.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/tasks.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/intervals.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/utils.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/tasks.py to tasks.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/sequences.py to sequences.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/translate.py to translate.cpython-311.pyc +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/merge.py to merge.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/version.py to version.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/merge.py to merge.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/version.py to version.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/filter.py to filter.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/translate.py to translate.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/filter.py to filter.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/utils.py to utils.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/caf.py to caf.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/tasks.py to tasks.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/intervals.py to intervals.cpython-311.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/utils.py to utils.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/sequences.py to sequences.cpython-311.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info creating pyfastaq.egg-info @@ -945,62 +988,74 @@ install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 - mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 - mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 - mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 - mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 - mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 - mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 - mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 - mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq.1 + mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 - mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 - mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 - mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 - mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 - mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 - mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 - mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 - mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 - mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 - mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 - mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 - mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 - mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 + mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 + mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 + mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 + mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 + mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 + mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 + mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 + mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 + mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 + mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 + mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 + mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 - mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 + mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 + mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 + mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 + mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 + mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 + mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 + mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 make[1]: Leaving directory '/build/fastaq-3.17.0' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130 @@ -1059,12 +1114,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10082/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18952 and its subdirectories -I: Current time: Fri May 12 09:32:10 -12 2023 -I: pbuilder-time-stamp: 1683927130 +I: removing directory /srv/workspace/pbuilder/10082 and its subdirectories +I: Current time: Fri Jun 14 17:55:54 +14 2024 +I: pbuilder-time-stamp: 1718337354