Diff of the two buildlogs: -- --- b1/build.log 2023-04-13 21:50:32.410576153 +0000 +++ b2/build.log 2023-04-13 21:53:57.717463561 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 15 16:12:30 -12 2024 -I: pbuilder-time-stamp: 1715832750 +I: Current time: Fri Apr 14 11:50:34 +14 2023 +I: pbuilder-time-stamp: 1681422634 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./capsule-nextflow_1.1.1+dfsg.orig.tar.xz] I: copying [./capsule-nextflow_1.1.1+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Nov 6 10:02:27 2022 -12 +gpgv: Signature made Mon Nov 7 12:02:27 2022 +14 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./capsule-nextflow_1.1.1+dfsg-1.dsc: no acceptable signature found @@ -36,137 +36,146 @@ dpkg-source: info: applying skip_tests_touching_security_sensitive_fields.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/58109/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' - INVOCATION_ID='990773ffe1704e89b67fb06f67862dc7' + INVOCATION_ID='ac3e47e9bad740caa882f6cf0ff8f7e6' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='de_CH:de' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='58109' + PPID='10511' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oxMJid3u/pbuilderrc_TxnM --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oxMJid3u/b1 --logfile b1/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oxMJid3u/pbuilderrc_Mwei --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oxMJid3u/b2 --logfile b2/build.log --extrapackages usrmerge capsule-nextflow_1.1.1+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + http_proxy='http://78.137.99.97:3128' I: uname -a - Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6040 - -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 2023 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 2023 more - -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount - -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 18 2022 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 2023 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/58109/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Feb 13 10:21 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 01:43 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 00:20 more + -rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount + -rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 19 07:00 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:21 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 4 Jan 6 03:20 sh -> dash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 00:20 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -397,7 +406,7 @@ Get: 179 http://deb.debian.org/debian bookworm/main i386 libjacoco-java all 0.8.6-2 [621 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 libjimfs-java all 1.1-6 [191 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 libtruth-java all 0.39-1 [164 kB] -Fetched 463 MB in 7s (64.1 MB/s) +Fetched 463 MB in 15s (31.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -1322,8 +1331,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1346,7 +1366,7 @@ dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=16 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=7 jar openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -1354,12 +1374,12 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.748 secs. -The client will now receive all logging from the daemon (pid: 78686). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-78686.out.log +An attempt to start the daemon took 1.303 secs. +The client will now receive all logging from the daemon (pid: 22192). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-22192.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 16 worker leases. +Using 7 worker leases. Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@8bd73f Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@8bd73f Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3daa76 @@ -1394,16 +1414,16 @@ Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a0663 Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@19366f8 :capsule:compileJava (Thread[Task worker for ':',5,main]) started. -:capsule-util:compileJava (Thread[Task worker for ':' Thread 14,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:compileJava :capsule-util:compileJava -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.003 secs. -Putting task artifact state for task ':capsule:compileJava' into context took 0.003 secs. -Up-to-date check for task ':capsule:compileJava' took 0.017 secs. It is not up-to-date because: +Putting task artifact state for task ':capsule:compileJava' into context took 0.006 secs. +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.009 secs. +Up-to-date check for task ':capsule:compileJava' took 0.035 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileJava' took 0.051 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileJava' took 0.135 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Compiling with JDK Java compiler API. @@ -1419,70 +1439,70 @@ /build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] getSecurityManager() in System has been deprecated and marked for removal final SecurityManager security = System.getSecurityManager(); ^ -Note: Some input files use or override a deprecated API. -Note: Recompile with -Xlint:deprecation for details. -Note: Some input files use unchecked or unsafe operations. -Note: Recompile with -Xlint:unchecked for details. -3 warnings -:capsule-util:compileJava (Thread[Task worker for ':' Thread 14,5,main]) completed. Took 1.657 secs. -:capsule-util:processResources (Thread[Task worker for ':' Thread 14,5,main]) started. -:capsule-util:processResources -Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. Note: /build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 5 warnings -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 1.664 secs. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 3.787 secs. :capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources -Up-to-date check for task ':capsule-util:processResources' took 0.003 secs. It is not up-to-date because: - No history is available. Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.024 secs. :capsule:classes (Thread[Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. :capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule:debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:debianMavenPom' took 0.008 secs. It is not up-to-date because: + No history is available. +Note: Some input files use or override a deprecated API. +Note: Recompile with -Xlint:deprecation for details. +Note: Some input files use unchecked or unsafe operations. +Note: Recompile with -Xlint:unchecked for details. +3 warnings + Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.277 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) started. +:capsule:jar +Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 4.103 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:processResources +Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. +Up-to-date check for task ':capsule-util:processResources' took 0.008 secs. It is not up-to-date because: + No history is available. +Up-to-date check for task ':capsule:jar' took 0.009 secs. It is not up-to-date because: No history is available. -:capsule-util:processResources (Thread[Task worker for ':' Thread 14,5,main]) completed. Took 0.026 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 14,5,main]) started. +:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.041 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. -:capsule-util:classes (Thread[Task worker for ':' Thread 14,5,main]) completed. Took 0.0 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 14,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:debianMavenPom' took 0.001 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:debianMavenPom' took 0.007 secs. It is not up-to-date because: No history is available. Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom - Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 14,5,main]) completed. Took 0.076 secs. -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.095 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 14,5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.02 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -:capsule:jar (Thread[Task worker for ':',5,main]) started. -:capsule:jar -Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule:jar' took 0.004 secs. It is not up-to-date because: +:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.096 secs. +Up-to-date check for task ':capsule-util:jar' took 0.015 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule-util:jar' took 0.005 secs. It is not up-to-date because: - No history is available. -:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.04 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 14,5,main]) completed. Took 0.051 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.082 secs. -BUILD SUCCESSFUL in 6s +BUILD SUCCESSFUL in 12s 7 actionable tasks: 7 executed dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=16 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=7 test openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -1490,17 +1510,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.775 secs. -The client will now receive all logging from the daemon (pid: 79184). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-79184.out.log +An attempt to start the daemon took 1.408 secs. +The client will now receive all logging from the daemon (pid: 24805). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-24805.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 16 worker leases. +Using 7 worker leases. Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1994e68 Starting Build -Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5ecc32 +Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1dba800 Settings evaluated using settings file '/build/capsule-nextflow-1.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/capsule-nextflow-1.1.1+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] @@ -1523,86 +1543,84 @@ Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1994e68 Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@16711b2 Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f5e8c3 -:capsule:compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. -:capsule-util:compileJava (Thread[Task worker for ':' Thread 13,5,main]) started. -:capsule-util:compileJava +:capsule:compileJava (Thread[Task worker for ':',5,main]) started. :capsule:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.004 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.004 secs. -Skipping task ':capsule:compileJava' as it is up-to-date (took 0.025 secs). +Putting task artifact state for task ':capsule:compileJava' into context took 0.009 secs. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:compileJava +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.0 secs. +Skipping task ':capsule:compileJava' as it is up-to-date (took 0.069 secs). :capsule:compileJava UP-TO-DATE -:capsule:compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.053 secs. -:capsule:processResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.13 secs. +:capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.003 secs. -:capsule:classes (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.043 secs. +:capsule:classes (Thread[Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. :capsule:classes UP-TO-DATE -:capsule:classes (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.001 secs). +Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.015 secs). :capsule:debianMavenPom UP-TO-DATE -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.003 secs. -:capsule:jar (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.034 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Skipping task ':capsule:jar' as it is up-to-date (took 0.005 secs). +Skipping task ':capsule:jar' as it is up-to-date (took 0.014 secs). :capsule:jar UP-TO-DATE -:capsule:jar (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.008 secs. -:capsule:processTestResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.023 secs. +:capsule:processTestResources (Thread[Task worker for ':',5,main]) started. :capsule:processTestResources Putting task artifact state for task ':capsule:processTestResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/test/resources', not found Skipping task ':capsule:processTestResources' as it has no source files and no previous output files. :capsule:processTestResources NO-SOURCE -:capsule:processTestResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. -Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.08 secs). +:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.013 secs. +Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.216 secs). :capsule-util:compileJava UP-TO-DATE -:capsule-util:compileJava (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 0.105 secs. -:capsule-util:processResources (Thread[Task worker for ':' Thread 13,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.26 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.003 secs). +Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.017 secs). :capsule-util:processResources UP-TO-DATE -:capsule-util:processResources (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 0.005 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 13,5,main]) started. +:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.021 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. :capsule-util:classes UP-TO-DATE -:capsule-util:classes (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 0.0 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 13,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.001 secs). +Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.003 secs). :capsule-util:debianMavenPom UP-TO-DATE -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 0.002 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 13,5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.006 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Skipping task ':capsule-util:jar' as it is up-to-date (took 0.002 secs). +Skipping task ':capsule-util:jar' as it is up-to-date (took 0.008 secs). :capsule-util:jar UP-TO-DATE -:capsule-util:jar (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 0.004 secs. -:capsule:compileTestJava (Thread[Task worker for ':' Thread 13,5,main]) started. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.013 secs. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:compileTestJava Putting task artifact state for task ':capsule:compileTestJava' into context took 0.0 secs. -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 4,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:compileTestJava Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@d075e8 +Creating new cache for metadata-2.36/module-metadata, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ce4f1 Loading the Maven rules... Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x - Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x - Replacing org.truth0:truth:jar:0.23 -> com.google.truth:truth:jar:debian Replacing org.truth0:truth:jar:0.23 -> com.google.truth:truth:jar:debian Passing through com.google.truth:truth-parent:jar:debian - Passing through com.google.truth:truth-parent:jar:debian + Replacing org.truth0:truth:jar:0.23 -> com.google.truth:truth:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Passing through com.google.jimfs:jimfs-parent:jar:debian @@ -1621,9 +1639,9 @@ Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian -Up-to-date check for task ':capsule-util:compileTestJava' took 0.894 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:compileTestJava' took 1.76 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule:compileTestJava' took 0.898 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileTestJava' took 1.739 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. @@ -1636,19 +1654,19 @@ warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 3 warnings -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 1.865 secs. -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 5.21 secs. +:capsule-util:processTestResources (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:processTestResources Putting task artifact state for task ':capsule-util:processTestResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule-util/src/test/resources', not found Skipping task ':capsule-util:processTestResources' as it has no source files and no previous output files. :capsule-util:processTestResources NO-SOURCE -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 4,5,main]) started. +:capsule-util:processTestResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.005 secs. +:capsule-util:testClasses (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:testClasses Skipping task ':capsule-util:testClasses' as it has no actions. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.0 secs. -:capsule-util:test (Thread[Task worker for ':' Thread 4,5,main]) started. +:capsule-util:testClasses (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. +:capsule-util:test (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:test Putting task artifact state for task ':capsule-util:test' into context took 0.0 secs. Replacing org.jacoco:org.jacoco.agent:jar:0.7.9 -> org.jacoco:org.jacoco.agent:jar:debian @@ -1658,25 +1676,28 @@ Note: /build/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/MyCapsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings -:capsule:compileTestJava (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 2.063 secs. -:capsule:testClasses (Thread[Task worker for ':' Thread 13,5,main]) started. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 5.356 secs. +:capsule:testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:testClasses Skipping task ':capsule:testClasses' as it has no actions. -:capsule:testClasses (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 0.0 secs. -:capsule:test (Thread[Task worker for ':' Thread 13,5,main]) started. +:capsule:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:capsule:test (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:test Putting task artifact state for task ':capsule:test' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:test' took 0.209 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:test' took 0.873 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule:test' took 0.128 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:test' took 0.942 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath16945002826464941453txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Starting process 'Gradle Test Executor 2'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath8253075441031656901txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 1'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath15831218065842018792txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 2'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath18216459268965019550txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 2' -Gradle Test Executor 2 started executing tests. Gradle Test Executor 1 started executing tests. -Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) +Gradle Test Executor 2 started executing tests. +Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) +Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) + +CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED Running test: Test testEmbeddedCaplet(CapsuleTest) CapsuleTest > testEmbeddedCaplet SKIPPED @@ -1800,25 +1821,20 @@ Running test: Test isJavaDir(CapsuleTest) CapsuleTest > isJavaDir SKIPPED -Running test: Test testApplicationArtifact(CapsuleTest) - -CapsuleTest > testApplicationArtifact SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 2 finished executing tests. +Running test: Test testApplicationArtifact(CapsuleTest) +Gradle Test Executor 1 finished executing tests. + +CapsuleTest > testApplicationArtifact SKIPPED Running test: Test testExtendClasspath(NextflowLoaderTest) Running test: Test testExtendDeps(NextflowLoaderTest) -Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) - -CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED -Finished generating test XML results (0.01 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test +Finished generating test XML results (0.035 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test Generating HTML test report... -Finished generating test html results (0.022 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test -:capsule:test (Thread[Task worker for ':' Thread 13,5,main]) completed. Took 1.178 secs. -Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) -Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) +Finished generating test html results (0.048 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test +:capsule:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 4.836 secs. Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip4(co.paralleluniverse.capsule.JarTest) @@ -1833,17 +1849,19 @@ Running test: Test testCreateJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory2(co.paralleluniverse.capsule.JarTest) -Gradle Test Executor 1 finished executing tests. +Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) +Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.002 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test +Gradle Test Executor 2 finished executing tests. +Finished generating test XML results (0.004 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test Generating HTML test report... -Finished generating test html results (0.002 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test -:capsule-util:test (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 1.749 secs. +Finished generating test html results (0.008 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test +:capsule-util:test (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 5.819 secs. -BUILD SUCCESSFUL in 7s +BUILD SUCCESSFUL in 19s 11 actionable tasks: 4 executed, 7 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -1875,12 +1893,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10511/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/58109 and its subdirectories -I: Current time: Wed May 15 16:13:31 -12 2024 -I: pbuilder-time-stamp: 1715832811 +I: removing directory /srv/workspace/pbuilder/10511 and its subdirectories +I: Current time: Fri Apr 14 11:53:57 +14 2023 +I: pbuilder-time-stamp: 1681422837