Diff of the two buildlogs: -- --- b1/build.log 2024-01-10 06:36:25.245103279 +0000 +++ b2/build.log 2024-01-10 06:42:38.366542001 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 9 18:31:26 -12 2024 -I: pbuilder-time-stamp: 1704868286 +I: Current time: Wed Jan 10 20:36:57 +14 2024 +I: pbuilder-time-stamp: 1704868617 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -26,49 +26,81 @@ dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/20168/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/D01_modify_environment starting +debug: Running on virt32a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 10 06:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='c8bc0316232a4d3dbb7d6a3b64ac3c0a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='20168' - PS1='# ' - PS2='> ' + INVOCATION_ID=fefb9e151a8d4cdc85f00e1b7df91e33 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20519 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9a2SnJTX/pbuilderrc_ArZt --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9a2SnJTX/b1 --logfile b1/build.log twopaco_1.0.0+dfsg-1.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9a2SnJTX/pbuilderrc_jgqC --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9a2SnJTX/b2 --logfile b2/build.log twopaco_1.0.0+dfsg-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux jtx1c 5.10.0-26-arm64 #1 SMP Debian 5.10.197-1 (2023-09-29) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-armmp-lpae #1 SMP Debian 6.1.69-1 (2023-12-30) armv7l GNU/Linux I: ls -l /bin total 4964 -rwxr-xr-x 1 root root 838488 Apr 23 2023 bash @@ -128,7 +160,7 @@ -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 14152 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 10 06:37 sh -> /bin/bash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 23 2023 su @@ -154,7 +186,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/20168/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -250,7 +282,7 @@ Get: 52 http://deb.debian.org/debian bookworm/main armhf libtbb12 armhf 2021.8.0-2 [65.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libtbb-dev armhf 2021.8.0-2 [192 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] -Fetched 30.8 MB in 3s (11.6 MB/s) +Fetched 30.8 MB in 1s (47.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17881 files and directories currently installed.) @@ -481,7 +513,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package twopaco dpkg-buildpackage: info: source version 1.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -528,34 +564,36 @@ -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf dh_auto_build -O--sourcedir=src - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 +make[1]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/depend make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump/CMakeFiles/graphdump.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor/CMakeFiles/twopaco.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build +make[3]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» +make[3]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -[ 21%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp +make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build +make[3]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» +make[3]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» +[ 28%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o +[ 28%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o +[ 28%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o +[ 28%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp -[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o [ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp +[ 42%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In function ‘void GenerateFastaOutput(const std::string&, const std::vector >&, size_t)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:519:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 519 | std::vector seen(MAX_SEGMENT_NUMBER, 0); @@ -568,14 +606,18 @@ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa2Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:685:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] -[ 42%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp +[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp +[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp: In function ‘int main(int, char**)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp:112:25: warning: conversion from ‘long long unsigned int’ to ‘unsigned int’ changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 112 | UINT64_MAX, | ^~~~~~~~~~ -[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp +[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp +[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp In file included from /usr/include/c++/12/algorithm:61, from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:11: /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: @@ -587,10 +629,6 @@ 1802 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp -[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp In file included from /usr/include/c++/12/vector:70, from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:4: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const TwoPaCo::JunctionPosition&}; _Tp = TwoPaCo::JunctionPosition; _Alloc = std::allocator]’: @@ -619,6 +657,8 @@ /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘void ReadInputSequences(const std::vector >&, std::vector >&, std::vector&, std::map, std::__cxx11::basic_string >&, bool)’ at /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:202:30, inlined from ‘void GenerateFastaOutput(const std::string&, const std::vector >&, size_t)’ at /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:507:20: @@ -630,6 +670,8 @@ /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, @@ -770,10 +812,6 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp -[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const EqClass&, const EqClass&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, inlined from ‘void tbb::detail::d1::quick_sort_body::operator()(const tbb::detail::d1::quick_sort_range&) const [with RandomAccessIterator = __gnu_cxx::__normal_iterator >; Compare = bool(const EqClass&, const EqClass&)]’ at /usr/include/oneapi/tbb/parallel_sort.h:170:18, @@ -822,12 +860,10 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp [ 92%] Linking CXX executable graphdump cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» [ 92%] Built target graphdump In file included from /usr/include/c++/12/bits/stl_tree.h:63, from /usr/include/c++/12/set:60, @@ -3002,654 +3038,279 @@ [100%] Linking CXX executable twopaco cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/cmake -E cmake_link_script CMakeFiles/twopaco.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o CMakeFiles/twopaco.dir/constructor.cpp.o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o CMakeFiles/twopaco.dir/compressedstring.cpp.o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o CMakeFiles/twopaco.dir/test.cpp.o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o CMakeFiles/twopaco.dir/common.cpp.o -o twopaco -ltbb -ltbbmalloc -ltbbmalloc_proxy -lpthread -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» [100%] Built target twopaco -make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[2]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg» obj-*/graphconstructor/twopaco --test -f 34 example/example.fa -ERROR at chr 0 pos 138, 1 != 0 -ERROR at chr 0 pos 158, 1 != 0 -ERROR at chr 0 pos 234, 1 != 0 -ERROR at chr 0 pos 310, 1 != 0 -ERROR at chr 0 pos 411, 1 != 0 -ERROR at chr 0 pos 467, 1 != 0 -ERROR at chr 0 pos 705, 1 != 0 -ERROR at chr 0 pos 772, 1 != 0 -ERROR at chr 0 pos 892, 1 != 0 -ERROR at chr 0 pos 917, 1 != 0 -ERROR at chr 0 pos 946, 1 != 0 -ERROR at chr 0 pos 1245, 1 != 0 -ERROR at chr 0 pos 1325, 1 != 0 -ERROR at chr 0 pos 1380, 1 != 0 -ERROR at chr 0 pos 1432, 1 != 0 -ERROR at chr 0 pos 1555, 1 != 0 -ERROR at chr 0 pos 1559, 1 != 0 -ERROR at chr 0 pos 1618, 1 != 0 -ERROR at chr 0 pos 1906, 1 != 0 -ERROR at chr 0 pos 2327, 1 != 0 -ERROR at chr 0 pos 2340, 1 != 0 -ERROR at chr 0 pos 2501, 1 != 0 -ERROR at chr 0 pos 2523, 1 != 0 -ERROR at chr 0 pos 2524, 1 != 0 -ERROR at chr 0 pos 2538, 1 != 0 -ERROR at chr 0 pos 2541, 1 != 0 -ERROR at chr 0 pos 2682, 1 != 0 -ERROR at chr 0 pos 2690, 1 != 0 -ERROR at chr 0 pos 2881, 1 != 0 -ERROR at chr 0 pos 2919, 1 != 0 -ERROR at chr 0 pos 3198, 1 != 0 -ERROR at chr 0 pos 3478, 1 != 0 -ERROR at chr 0 pos 3529, 1 != 0 -ERROR at chr 0 pos 3591, 1 != 0 -ERROR at chr 0 pos 3605, 1 != 0 -ERROR at chr 0 pos 3624, 1 != 0 -ERROR at chr 0 pos 3780, 1 != 0 -ERROR at chr 0 pos 4116, 1 != 0 -ERROR at chr 0 pos 4131, 1 != 0 -ERROR at chr 0 pos 4213, 1 != 0 -ERROR at chr 0 pos 4247, 1 != 0 -ERROR at chr 0 pos 4342, 1 != 0 -ERROR at chr 0 pos 4355, 1 != 0 -ERROR at chr 0 pos 4452, 1 != 0 -ERROR at chr 0 pos 4557, 1 != 0 -ERROR at chr 0 pos 4658, 1 != 0 -ERROR at chr 0 pos 4678, 1 != 0 -ERROR at chr 0 pos 4761, 1 != 0 -ERROR at chr 0 pos 4762, 1 != 0 -ERROR at chr 0 pos 4836, 1 != 0 -ERROR at chr 0 pos 4851, 1 != 0 -ERROR at chr 0 pos 4854, 1 != 0 -ERROR at chr 0 pos 4999, 1 != 0 -ERROR at chr 0 pos 5013, 1 != 0 -ERROR at chr 0 pos 5136, 1 != 0 -ERROR at chr 0 pos 5303, 1 != 0 -ERROR at chr 0 pos 5432, 1 != 0 -ERROR at chr 0 pos 5514, 1 != 0 -ERROR at chr 0 pos 5624, 1 != 0 -ERROR at chr 0 pos 5641, 1 != 0 -ERROR at chr 0 pos 5853, 1 != 0 -ERROR at chr 0 pos 5935, 1 != 0 -ERROR at chr 0 pos 6028, 1 != 0 -ERROR at chr 0 pos 6050, 1 != 0 -ERROR at chr 0 pos 6217, 1 != 0 -ERROR at chr 0 pos 6239, 1 != 0 -ERROR at chr 0 pos 6244, 1 != 0 -ERROR at chr 0 pos 6293, 1 != 0 -ERROR at chr 0 pos 6480, 1 != 0 -ERROR at chr 0 pos 6657, 1 != 0 -ERROR at chr 0 pos 6776, 1 != 0 -ERROR at chr 0 pos 6862, 1 != 0 -ERROR at chr 0 pos 6929, 1 != 0 -ERROR at chr 0 pos 6961, 1 != 0 -ERROR at chr 0 pos 7021, 1 != 0 -ERROR at chr 0 pos 7042, 1 != 0 -ERROR at chr 0 pos 7121, 1 != 0 -ERROR at chr 0 pos 7205, 1 != 0 -ERROR at chr 0 pos 7312, 1 != 0 -ERROR at chr 0 pos 7339, 1 != 0 -ERROR at chr 0 pos 7640, 1 != 0 -ERROR at chr 0 pos 7657, 1 != 0 -ERROR at chr 0 pos 7829, 1 != 0 -ERROR at chr 0 pos 7914, 1 != 0 -ERROR at chr 0 pos 7967, 1 != 0 -ERROR at chr 0 pos 7968, 1 != 0 -ERROR at chr 0 pos 8176, 1 != 0 -ERROR at chr 0 pos 8196, 1 != 0 -ERROR at chr 0 pos 8404, 1 != 0 -ERROR at chr 0 pos 8507, 1 != 0 -ERROR at chr 0 pos 8541, 1 != 0 -ERROR at chr 0 pos 8662, 1 != 0 -ERROR at chr 0 pos 8680, 1 != 0 -ERROR at chr 0 pos 8684, 1 != 0 -ERROR at chr 0 pos 8688, 1 != 0 -ERROR at chr 0 pos 8784, 1 != 0 -ERROR at chr 0 pos 8890, 1 != 0 -ERROR at chr 0 pos 8917, 1 != 0 -ERROR at chr 0 pos 8952, 1 != 0 -ERROR at chr 1 pos 144, 1 != 0 -ERROR at chr 1 pos 178, 1 != 0 -ERROR at chr 1 pos 195, 1 != 0 -ERROR at chr 1 pos 413, 1 != 0 -ERROR at chr 1 pos 435, 1 != 0 -ERROR at chr 1 pos 471, 1 != 0 -ERROR at chr 1 pos 714, 1 != 0 -ERROR at chr 1 pos 727, 1 != 0 -ERROR at chr 1 pos 780, 1 != 0 -ERROR at chr 1 pos 900, 1 != 0 -ERROR at chr 1 pos 925, 1 != 0 -ERROR at chr 1 pos 954, 1 != 0 -ERROR at chr 1 pos 1064, 1 != 0 -ERROR at chr 1 pos 1118, 1 != 0 -ERROR at chr 1 pos 1119, 1 != 0 -ERROR at chr 1 pos 1254, 1 != 0 -ERROR at chr 1 pos 1332, 1 != 0 -ERROR at chr 1 pos 1387, 1 != 0 -ERROR at chr 1 pos 1441, 1 != 0 -ERROR at chr 1 pos 1561, 1 != 0 -ERROR at chr 1 pos 1565, 1 != 0 -ERROR at chr 1 pos 1624, 1 != 0 -ERROR at chr 1 pos 1913, 1 != 0 -ERROR at chr 1 pos 1968, 1 != 0 -ERROR at chr 1 pos 2334, 1 != 0 -ERROR at chr 1 pos 2347, 1 != 0 -ERROR at chr 1 pos 2507, 1 != 0 -ERROR at chr 1 pos 2520, 1 != 0 -ERROR at chr 1 pos 2529, 1 != 0 -ERROR at chr 1 pos 2530, 1 != 0 -ERROR at chr 1 pos 2546, 1 != 0 -ERROR at chr 1 pos 2687, 1 != 0 -ERROR at chr 1 pos 2695, 1 != 0 -ERROR at chr 1 pos 2811, 1 != 0 -ERROR at chr 1 pos 2883, 1 != 0 -ERROR at chr 1 pos 2923, 1 != 0 -ERROR at chr 1 pos 3567, 1 != 0 -ERROR at chr 1 pos 3591, 1 != 0 -ERROR at chr 1 pos 3622, 1 != 0 -ERROR at chr 1 pos 3710, 1 != 0 -ERROR at chr 1 pos 3777, 1 != 0 -ERROR at chr 1 pos 3879, 1 != 0 -ERROR at chr 1 pos 3895, 1 != 0 -ERROR at chr 1 pos 4115, 1 != 0 -ERROR at chr 1 pos 4243, 1 != 0 -ERROR at chr 1 pos 4338, 1 != 0 -ERROR at chr 1 pos 4350, 1 != 0 -ERROR at chr 1 pos 4444, 1 != 0 -ERROR at chr 1 pos 4547, 1 != 0 -ERROR at chr 1 pos 4562, 1 != 0 -ERROR at chr 1 pos 4640, 1 != 0 -ERROR at chr 1 pos 4670, 1 != 0 -ERROR at chr 1 pos 4751, 1 != 0 -ERROR at chr 1 pos 4752, 1 != 0 -ERROR at chr 1 pos 4829, 1 != 0 -ERROR at chr 1 pos 4844, 1 != 0 -ERROR at chr 1 pos 4847, 1 != 0 -ERROR at chr 1 pos 4851, 1 != 0 -ERROR at chr 1 pos 4974, 1 != 0 -ERROR at chr 1 pos 4987, 1 != 0 -ERROR at chr 1 pos 5001, 1 != 0 -ERROR at chr 1 pos 5214, 1 != 0 -ERROR at chr 1 pos 5296, 1 != 0 -ERROR at chr 1 pos 5419, 1 != 0 -ERROR at chr 1 pos 5500, 1 != 0 -ERROR at chr 1 pos 5584, 1 != 0 -ERROR at chr 1 pos 5632, 1 != 0 -ERROR at chr 1 pos 5773, 1 != 0 -ERROR at chr 1 pos 5842, 1 != 0 -ERROR at chr 1 pos 5923, 1 != 0 -ERROR at chr 1 pos 6015, 1 != 0 -ERROR at chr 1 pos 6038, 1 != 0 -ERROR at chr 1 pos 6207, 1 != 0 -ERROR at chr 1 pos 6228, 1 != 0 -ERROR at chr 1 pos 6233, 1 != 0 -ERROR at chr 1 pos 6411, 1 != 0 -ERROR at chr 1 pos 6472, 1 != 0 -ERROR at chr 1 pos 6494, 1 != 0 -ERROR at chr 1 pos 6629, 1 != 0 -ERROR at chr 1 pos 6650, 1 != 0 -ERROR at chr 1 pos 6768, 1 != 0 -ERROR at chr 1 pos 6851, 1 != 0 -ERROR at chr 1 pos 6916, 1 != 0 -ERROR at chr 1 pos 6948, 1 != 0 -ERROR at chr 1 pos 7021, 1 != 0 -ERROR at chr 1 pos 7029, 1 != 0 -ERROR at chr 1 pos 7108, 1 != 0 -ERROR at chr 1 pos 7298, 1 != 0 -ERROR at chr 1 pos 7327, 1 != 0 -ERROR at chr 1 pos 7429, 1 != 0 -ERROR at chr 1 pos 7548, 1 != 0 -ERROR at chr 1 pos 7654, 1 != 0 -ERROR at chr 1 pos 7658, 1 != 0 -ERROR at chr 1 pos 7661, 1 != 0 -ERROR at chr 1 pos 7812, 1 != 0 -ERROR at chr 1 pos 7895, 1 != 0 -ERROR at chr 1 pos 7946, 1 != 0 -ERROR at chr 1 pos 7947, 1 != 0 -ERROR at chr 1 pos 8156, 1 != 0 -ERROR at chr 1 pos 8177, 1 != 0 -ERROR at chr 1 pos 8179, 1 != 0 -ERROR at chr 1 pos 8197, 1 != 0 -ERROR at chr 1 pos 8385, 1 != 0 -ERROR at chr 1 pos 8489, 1 != 0 -ERROR at chr 1 pos 8632, 1 != 0 -ERROR at chr 1 pos 8648, 1 != 0 -ERROR at chr 1 pos 8666, 1 != 0 -ERROR at chr 1 pos 8670, 1 != 0 -ERROR at chr 1 pos 8674, 1 != 0 -ERROR at chr 1 pos 8771, 1 != 0 -ERROR at chr 1 pos 8875, 1 != 0 -ERROR at chr 1 pos 8901, 1 != 0 -ERROR at chr 1 pos 8936, 1 != 0 -ERROR at chr 2 pos 136, 1 != 0 -ERROR at chr 2 pos 218, 1 != 0 -ERROR at chr 2 pos 231, 1 != 0 -ERROR at chr 2 pos 306, 1 != 0 -ERROR at chr 2 pos 456, 1 != 0 -ERROR at chr 2 pos 470, 1 != 0 -ERROR at chr 2 pos 696, 1 != 0 -ERROR at chr 2 pos 733, 1 != 0 -ERROR at chr 2 pos 779, 1 != 0 -ERROR at chr 2 pos 888, 1 != 0 -ERROR at chr 2 pos 900, 1 != 0 -ERROR at chr 2 pos 925, 1 != 0 -ERROR at chr 2 pos 954, 1 != 0 -ERROR at chr 2 pos 1085, 1 != 0 -ERROR at chr 2 pos 1247, 1 != 0 -ERROR at chr 2 pos 1326, 1 != 0 -ERROR at chr 2 pos 1382, 1 != 0 -ERROR at chr 2 pos 1434, 1 != 0 -ERROR at chr 2 pos 1557, 1 != 0 -ERROR at chr 2 pos 1561, 1 != 0 -ERROR at chr 2 pos 1622, 1 != 0 -ERROR at chr 2 pos 1673, 1 != 0 -ERROR at chr 2 pos 1908, 1 != 0 -ERROR at chr 2 pos 2097, 1 != 0 -ERROR at chr 2 pos 2329, 1 != 0 -ERROR at chr 2 pos 2342, 1 != 0 -ERROR at chr 2 pos 2474, 1 != 0 -ERROR at chr 2 pos 2506, 1 != 0 -ERROR at chr 2 pos 2528, 1 != 0 -ERROR at chr 2 pos 2529, 1 != 0 -ERROR at chr 2 pos 2544, 1 != 0 -ERROR at chr 2 pos 2686, 1 != 0 -ERROR at chr 2 pos 2743, 1 != 0 -ERROR at chr 2 pos 2746, 1 != 0 -ERROR at chr 2 pos 2884, 1 != 0 -ERROR at chr 2 pos 2922, 1 != 0 -ERROR at chr 2 pos 3022, 1 != 0 -ERROR at chr 2 pos 3027, 1 != 0 -ERROR at chr 2 pos 3099, 1 != 0 -ERROR at chr 2 pos 3476, 1 != 0 -ERROR at chr 2 pos 3526, 1 != 0 -ERROR at chr 2 pos 3588, 1 != 0 -ERROR at chr 2 pos 3602, 1 != 0 -ERROR at chr 2 pos 3776, 1 != 0 -ERROR at chr 2 pos 3869, 1 != 0 -ERROR at chr 2 pos 3916, 1 != 0 -ERROR at chr 2 pos 4112, 1 != 0 -ERROR at chr 2 pos 4127, 1 != 0 -ERROR at chr 2 pos 4194, 1 != 0 +ERROR at chr 0 pos 120, 1 != 0 +ERROR at chr 0 pos 208, 1 != 0 +ERROR at chr 0 pos 280, 1 != 0 +ERROR at chr 0 pos 345, 1 != 0 +ERROR at chr 0 pos 399, 1 != 0 +ERROR at chr 0 pos 440, 1 != 0 +ERROR at chr 0 pos 722, 1 != 0 +ERROR at chr 0 pos 1096, 1 != 0 +ERROR at chr 0 pos 1146, 1 != 0 +ERROR at chr 0 pos 1366, 1 != 0 +ERROR at chr 0 pos 2404, 1 != 0 +ERROR at chr 0 pos 2551, 1 != 0 +ERROR at chr 0 pos 2629, 1 != 0 +ERROR at chr 0 pos 2637, 1 != 0 +ERROR at chr 0 pos 2883, 1 != 0 +ERROR at chr 0 pos 3050, 1 != 0 +ERROR at chr 0 pos 3149, 1 != 0 +ERROR at chr 0 pos 3248, 1 != 0 +ERROR at chr 0 pos 3680, 1 != 0 +ERROR at chr 0 pos 3852, 1 != 0 +ERROR at chr 0 pos 4337, 1 != 0 +ERROR at chr 0 pos 4531, 1 != 0 +ERROR at chr 0 pos 4842, 1 != 0 +ERROR at chr 0 pos 5138, 1 != 0 +ERROR at chr 0 pos 5250, 1 != 0 +ERROR at chr 0 pos 5623, 1 != 0 +ERROR at chr 0 pos 5708, 1 != 0 +ERROR at chr 0 pos 6145, 1 != 0 +ERROR at chr 0 pos 6730, 1 != 0 +ERROR at chr 0 pos 7015, 1 != 0 +ERROR at chr 0 pos 7149, 1 != 0 +ERROR at chr 0 pos 7230, 1 != 0 +ERROR at chr 0 pos 7393, 1 != 0 +ERROR at chr 0 pos 7959, 1 != 0 +ERROR at chr 0 pos 8094, 1 != 0 +ERROR at chr 0 pos 8109, 1 != 0 +ERROR at chr 0 pos 8195, 1 != 0 +ERROR at chr 0 pos 8197, 1 != 0 +ERROR at chr 0 pos 8357, 1 != 0 +ERROR at chr 0 pos 8509, 1 != 0 +ERROR at chr 1 pos 116, 1 != 0 +ERROR at chr 1 pos 201, 1 != 0 +ERROR at chr 1 pos 274, 1 != 0 +ERROR at chr 1 pos 393, 1 != 0 +ERROR at chr 1 pos 432, 1 != 0 +ERROR at chr 1 pos 711, 1 != 0 +ERROR at chr 1 pos 839, 1 != 0 +ERROR at chr 1 pos 1090, 1 != 0 +ERROR at chr 1 pos 1127, 1 != 0 +ERROR at chr 1 pos 1196, 1 != 0 +ERROR at chr 1 pos 1248, 1 != 0 +ERROR at chr 1 pos 1362, 1 != 0 +ERROR at chr 1 pos 2397, 1 != 0 +ERROR at chr 1 pos 2540, 1 != 0 +ERROR at chr 1 pos 2568, 1 != 0 +ERROR at chr 1 pos 2627, 1 != 0 +ERROR at chr 1 pos 3007, 1 != 0 +ERROR at chr 1 pos 3143, 1 != 0 +ERROR at chr 1 pos 3247, 1 != 0 +ERROR at chr 1 pos 3424, 1 != 0 +ERROR at chr 1 pos 3492, 1 != 0 +ERROR at chr 1 pos 3493, 1 != 0 +ERROR at chr 1 pos 3686, 1 != 0 +ERROR at chr 1 pos 3859, 1 != 0 +ERROR at chr 1 pos 4194, 1 != 0 +ERROR at chr 1 pos 4588, 1 != 0 +ERROR at chr 1 pos 5147, 1 != 0 +ERROR at chr 1 pos 5262, 1 != 0 +ERROR at chr 1 pos 5717, 1 != 0 +ERROR at chr 1 pos 6033, 1 != 0 +ERROR at chr 1 pos 6149, 1 != 0 +ERROR at chr 1 pos 6949, 1 != 0 +ERROR at chr 1 pos 7019, 1 != 0 +ERROR at chr 1 pos 7089, 1 != 0 +ERROR at chr 1 pos 7151, 1 != 0 +ERROR at chr 1 pos 7961, 1 != 0 +ERROR at chr 1 pos 8100, 1 != 0 +ERROR at chr 1 pos 8115, 1 != 0 +ERROR at chr 1 pos 8201, 1 != 0 +ERROR at chr 1 pos 8203, 1 != 0 +ERROR at chr 1 pos 8366, 1 != 0 +ERROR at chr 1 pos 8613, 1 != 0 +ERROR at chr 1 pos 8889, 1 != 0 +ERROR at chr 1 pos 8891, 1 != 0 +ERROR at chr 2 pos 208, 1 != 0 +ERROR at chr 2 pos 280, 1 != 0 +ERROR at chr 2 pos 344, 1 != 0 +ERROR at chr 2 pos 401, 1 != 0 +ERROR at chr 2 pos 442, 1 != 0 +ERROR at chr 2 pos 479, 1 != 0 +ERROR at chr 2 pos 728, 1 != 0 +ERROR at chr 2 pos 1096, 1 != 0 +ERROR at chr 2 pos 1111, 1 != 0 +ERROR at chr 2 pos 1144, 1 != 0 +ERROR at chr 2 pos 1303, 1 != 0 +ERROR at chr 2 pos 1713, 1 != 0 +ERROR at chr 2 pos 2396, 1 != 0 +ERROR at chr 2 pos 2543, 1 != 0 +ERROR at chr 2 pos 2623, 1 != 0 +ERROR at chr 2 pos 2631, 1 != 0 +ERROR at chr 2 pos 2645, 1 != 0 +ERROR at chr 2 pos 2880, 1 != 0 +ERROR at chr 2 pos 3047, 1 != 0 +ERROR at chr 2 pos 3072, 1 != 0 +ERROR at chr 2 pos 3149, 1 != 0 +ERROR at chr 2 pos 3249, 1 != 0 +ERROR at chr 2 pos 3253, 1 != 0 +ERROR at chr 2 pos 3677, 1 != 0 +ERROR at chr 2 pos 3848, 1 != 0 ERROR at chr 2 pos 4333, 1 != 0 -ERROR at chr 2 pos 4345, 1 != 0 -ERROR at chr 2 pos 4443, 1 != 0 -ERROR at chr 2 pos 4651, 1 != 0 -ERROR at chr 2 pos 4671, 1 != 0 -ERROR at chr 2 pos 4754, 1 != 0 -ERROR at chr 2 pos 4755, 1 != 0 -ERROR at chr 2 pos 4830, 1 != 0 -ERROR at chr 2 pos 4845, 1 != 0 -ERROR at chr 2 pos 4918, 1 != 0 -ERROR at chr 2 pos 4997, 1 != 0 -ERROR at chr 2 pos 5137, 1 != 0 -ERROR at chr 2 pos 5197, 1 != 0 -ERROR at chr 2 pos 5302, 1 != 0 -ERROR at chr 2 pos 5431, 1 != 0 -ERROR at chr 2 pos 5446, 1 != 0 -ERROR at chr 2 pos 5640, 1 != 0 -ERROR at chr 2 pos 6032, 1 != 0 -ERROR at chr 2 pos 6054, 1 != 0 -ERROR at chr 2 pos 6061, 1 != 0 -ERROR at chr 2 pos 6243, 1 != 0 -ERROR at chr 2 pos 6465, 1 != 0 -ERROR at chr 2 pos 6478, 1 != 0 -ERROR at chr 2 pos 6656, 1 != 0 -ERROR at chr 2 pos 6848, 1 != 0 -ERROR at chr 2 pos 6862, 1 != 0 -ERROR at chr 2 pos 6930, 1 != 0 -ERROR at chr 2 pos 7021, 1 != 0 -ERROR at chr 2 pos 7042, 1 != 0 -ERROR at chr 2 pos 7123, 1 != 0 -ERROR at chr 2 pos 7211, 1 != 0 -ERROR at chr 2 pos 7244, 1 != 0 -ERROR at chr 2 pos 7341, 1 != 0 -ERROR at chr 2 pos 7512, 1 != 0 -ERROR at chr 2 pos 7548, 1 != 0 -ERROR at chr 2 pos 7569, 1 != 0 -ERROR at chr 2 pos 7645, 1 != 0 -ERROR at chr 2 pos 7662, 1 != 0 -ERROR at chr 2 pos 7719, 1 != 0 -ERROR at chr 2 pos 7834, 1 != 0 -ERROR at chr 2 pos 7919, 1 != 0 -ERROR at chr 2 pos 7973, 1 != 0 -ERROR at chr 2 pos 7974, 1 != 0 -ERROR at chr 2 pos 8122, 1 != 0 -ERROR at chr 2 pos 8143, 1 != 0 -ERROR at chr 2 pos 8188, 1 != 0 -ERROR at chr 2 pos 8208, 1 != 0 -ERROR at chr 2 pos 8418, 1 != 0 -ERROR at chr 2 pos 8435, 1 != 0 -ERROR at chr 2 pos 8524, 1 != 0 -ERROR at chr 2 pos 8558, 1 != 0 -ERROR at chr 2 pos 8678, 1 != 0 -ERROR at chr 2 pos 8702, 1 != 0 -ERROR at chr 2 pos 8795, 1 != 0 +ERROR at chr 2 pos 4413, 1 != 0 +ERROR at chr 2 pos 4594, 1 != 0 +ERROR at chr 2 pos 4825, 1 != 0 +ERROR at chr 2 pos 4829, 1 != 0 +ERROR at chr 2 pos 5132, 1 != 0 +ERROR at chr 2 pos 5705, 1 != 0 +ERROR at chr 2 pos 5967, 1 != 0 +ERROR at chr 2 pos 6002, 1 != 0 +ERROR at chr 2 pos 6642, 1 != 0 +ERROR at chr 2 pos 6836, 1 != 0 +ERROR at chr 2 pos 7010, 1 != 0 +ERROR at chr 2 pos 7144, 1 != 0 +ERROR at chr 2 pos 7286, 1 != 0 +ERROR at chr 2 pos 7356, 1 != 0 +ERROR at chr 2 pos 7388, 1 != 0 +ERROR at chr 2 pos 7955, 1 != 0 +ERROR at chr 2 pos 8089, 1 != 0 +ERROR at chr 2 pos 8191, 1 != 0 +ERROR at chr 2 pos 8193, 1 != 0 +ERROR at chr 2 pos 8355, 1 != 0 +ERROR at chr 2 pos 8505, 1 != 0 ERROR at chr 2 pos 8839, 1 != 0 -ERROR at chr 2 pos 8901, 1 != 0 -ERROR at chr 2 pos 8963, 1 != 0 -ERROR at chr 3 pos 141, 1 != 0 -ERROR at chr 3 pos 187, 1 != 0 -ERROR at chr 3 pos 237, 1 != 0 -ERROR at chr 3 pos 313, 1 != 0 -ERROR at chr 3 pos 412, 1 != 0 -ERROR at chr 3 pos 468, 1 != 0 -ERROR at chr 3 pos 491, 1 != 0 -ERROR at chr 3 pos 709, 1 != 0 -ERROR at chr 3 pos 776, 1 != 0 -ERROR at chr 3 pos 1147, 1 != 0 -ERROR at chr 3 pos 1160, 1 != 0 -ERROR at chr 3 pos 1334, 1 != 0 -ERROR at chr 3 pos 1391, 1 != 0 -ERROR at chr 3 pos 1397, 1 != 0 -ERROR at chr 3 pos 1443, 1 != 0 -ERROR at chr 3 pos 1566, 1 != 0 -ERROR at chr 3 pos 1570, 1 != 0 -ERROR at chr 3 pos 1629, 1 != 0 -ERROR at chr 3 pos 1914, 1 != 0 -ERROR at chr 3 pos 2154, 1 != 0 -ERROR at chr 3 pos 2258, 1 != 0 -ERROR at chr 3 pos 2340, 1 != 0 +ERROR at chr 3 pos 281, 1 != 0 +ERROR at chr 3 pos 439, 1 != 0 +ERROR at chr 3 pos 721, 1 != 0 +ERROR at chr 3 pos 842, 1 != 0 +ERROR at chr 3 pos 872, 1 != 0 +ERROR at chr 3 pos 1085, 1 != 0 +ERROR at chr 3 pos 1136, 1 != 0 +ERROR at chr 3 pos 1354, 1 != 0 +ERROR at chr 3 pos 1773, 1 != 0 +ERROR at chr 3 pos 2298, 1 != 0 ERROR at chr 3 pos 2378, 1 != 0 -ERROR at chr 3 pos 2515, 1 != 0 -ERROR at chr 3 pos 2536, 1 != 0 -ERROR at chr 3 pos 2537, 1 != 0 -ERROR at chr 3 pos 2551, 1 != 0 -ERROR at chr 3 pos 2554, 1 != 0 -ERROR at chr 3 pos 2695, 1 != 0 -ERROR at chr 3 pos 2703, 1 != 0 -ERROR at chr 3 pos 2794, 1 != 0 -ERROR at chr 3 pos 2891, 1 != 0 -ERROR at chr 3 pos 3197, 1 != 0 -ERROR at chr 3 pos 3309, 1 != 0 -ERROR at chr 3 pos 3351, 1 != 0 -ERROR at chr 3 pos 3483, 1 != 0 -ERROR at chr 3 pos 3535, 1 != 0 -ERROR at chr 3 pos 3598, 1 != 0 -ERROR at chr 3 pos 3613, 1 != 0 -ERROR at chr 3 pos 3632, 1 != 0 -ERROR at chr 3 pos 3692, 1 != 0 -ERROR at chr 3 pos 3788, 1 != 0 -ERROR at chr 3 pos 3794, 1 != 0 -ERROR at chr 3 pos 4025, 1 != 0 -ERROR at chr 3 pos 4125, 1 != 0 -ERROR at chr 3 pos 4224, 1 != 0 -ERROR at chr 3 pos 4274, 1 != 0 -ERROR at chr 3 pos 4367, 1 != 0 -ERROR at chr 3 pos 4430, 1 != 0 -ERROR at chr 3 pos 4432, 1 != 0 -ERROR at chr 3 pos 4459, 1 != 0 -ERROR at chr 3 pos 4666, 1 != 0 -ERROR at chr 3 pos 4685, 1 != 0 -ERROR at chr 3 pos 4840, 1 != 0 -ERROR at chr 3 pos 4858, 1 != 0 -ERROR at chr 3 pos 4987, 1 != 0 -ERROR at chr 3 pos 5005, 1 != 0 -ERROR at chr 3 pos 5019, 1 != 0 -ERROR at chr 3 pos 5099, 1 != 0 -ERROR at chr 3 pos 5142, 1 != 0 -ERROR at chr 3 pos 5306, 1 != 0 -ERROR at chr 3 pos 5432, 1 != 0 -ERROR at chr 3 pos 5451, 1 != 0 -ERROR at chr 3 pos 5514, 1 != 0 -ERROR at chr 3 pos 5623, 1 != 0 -ERROR at chr 3 pos 5631, 1 != 0 -ERROR at chr 3 pos 5641, 1 != 0 -ERROR at chr 3 pos 5853, 1 != 0 -ERROR at chr 3 pos 5858, 1 != 0 -ERROR at chr 3 pos 5864, 1 != 0 -ERROR at chr 3 pos 5935, 1 != 0 -ERROR at chr 3 pos 6028, 1 != 0 -ERROR at chr 3 pos 6299, 1 != 0 -ERROR at chr 3 pos 6482, 1 != 0 -ERROR at chr 3 pos 6484, 1 != 0 -ERROR at chr 3 pos 6489, 1 != 0 -ERROR at chr 3 pos 6666, 1 != 0 -ERROR at chr 3 pos 6731, 1 != 0 -ERROR at chr 3 pos 6787, 1 != 0 -ERROR at chr 3 pos 6860, 1 != 0 -ERROR at chr 3 pos 6861, 1 != 0 -ERROR at chr 3 pos 6873, 1 != 0 -ERROR at chr 3 pos 6938, 1 != 0 -ERROR at chr 3 pos 6970, 1 != 0 -ERROR at chr 3 pos 7055, 1 != 0 -ERROR at chr 3 pos 7133, 1 != 0 -ERROR at chr 3 pos 7215, 1 != 0 -ERROR at chr 3 pos 7249, 1 != 0 -ERROR at chr 3 pos 7321, 1 != 0 -ERROR at chr 3 pos 7348, 1 != 0 -ERROR at chr 3 pos 7398, 1 != 0 -ERROR at chr 3 pos 7503, 1 != 0 -ERROR at chr 3 pos 7527, 1 != 0 -ERROR at chr 3 pos 7555, 1 != 0 -ERROR at chr 3 pos 7648, 1 != 0 -ERROR at chr 3 pos 7840, 1 != 0 -ERROR at chr 3 pos 7922, 1 != 0 -ERROR at chr 3 pos 7959, 1 != 0 -ERROR at chr 3 pos 8174, 1 != 0 -ERROR at chr 3 pos 8207, 1 != 0 -ERROR at chr 3 pos 8225, 1 != 0 -ERROR at chr 3 pos 8414, 1 != 0 -ERROR at chr 3 pos 8464, 1 != 0 -ERROR at chr 3 pos 8517, 1 != 0 -ERROR at chr 3 pos 8626, 1 != 0 -ERROR at chr 3 pos 8643, 1 != 0 -ERROR at chr 3 pos 8674, 1 != 0 -ERROR at chr 3 pos 8692, 1 != 0 -ERROR at chr 3 pos 8696, 1 != 0 -ERROR at chr 3 pos 8700, 1 != 0 -ERROR at chr 3 pos 8793, 1 != 0 -ERROR at chr 3 pos 8897, 1 != 0 -ERROR at chr 3 pos 8925, 1 != 0 -ERROR at chr 3 pos 8959, 1 != 0 -ERROR at chr 4 pos 32, 1 != 0 -ERROR at chr 4 pos 37, 1 != 0 -ERROR at chr 4 pos 140, 1 != 0 -ERROR at chr 4 pos 160, 1 != 0 -ERROR at chr 4 pos 237, 1 != 0 -ERROR at chr 4 pos 310, 1 != 0 -ERROR at chr 4 pos 417, 1 != 0 -ERROR at chr 4 pos 475, 1 != 0 -ERROR at chr 4 pos 530, 1 != 0 -ERROR at chr 4 pos 624, 1 != 0 -ERROR at chr 4 pos 710, 1 != 0 -ERROR at chr 4 pos 777, 1 != 0 -ERROR at chr 4 pos 844, 1 != 0 -ERROR at chr 4 pos 896, 1 != 0 -ERROR at chr 4 pos 1145, 1 != 0 -ERROR at chr 4 pos 1323, 1 != 0 -ERROR at chr 4 pos 1432, 1 != 0 -ERROR at chr 4 pos 1557, 1 != 0 -ERROR at chr 4 pos 1561, 1 != 0 -ERROR at chr 4 pos 1621, 1 != 0 -ERROR at chr 4 pos 1909, 1 != 0 -ERROR at chr 4 pos 2329, 1 != 0 -ERROR at chr 4 pos 2343, 1 != 0 -ERROR at chr 4 pos 2406, 1 != 0 -ERROR at chr 4 pos 2505, 1 != 0 -ERROR at chr 4 pos 2527, 1 != 0 -ERROR at chr 4 pos 2528, 1 != 0 -ERROR at chr 4 pos 2603, 1 != 0 -ERROR at chr 4 pos 2697, 1 != 0 -ERROR at chr 4 pos 2744, 1 != 0 -ERROR at chr 4 pos 2801, 1 != 0 -ERROR at chr 4 pos 2842, 1 != 0 -ERROR at chr 4 pos 2894, 1 != 0 -ERROR at chr 4 pos 3146, 1 != 0 -ERROR at chr 4 pos 3254, 1 != 0 -ERROR at chr 4 pos 3386, 1 != 0 -ERROR at chr 4 pos 3507, 1 != 0 -ERROR at chr 4 pos 3536, 1 != 0 -ERROR at chr 4 pos 3600, 1 != 0 -ERROR at chr 4 pos 3634, 1 != 0 -ERROR at chr 4 pos 3788, 1 != 0 -ERROR at chr 4 pos 3821, 1 != 0 -ERROR at chr 4 pos 3916, 1 != 0 -ERROR at chr 4 pos 3932, 1 != 0 -ERROR at chr 4 pos 3987, 1 != 0 -ERROR at chr 4 pos 3996, 1 != 0 -ERROR at chr 4 pos 4126, 1 != 0 -ERROR at chr 4 pos 4224, 1 != 0 -ERROR at chr 4 pos 4258, 1 != 0 -ERROR at chr 4 pos 4368, 1 != 0 -ERROR at chr 4 pos 4452, 1 != 0 -ERROR at chr 4 pos 4453, 1 != 0 -ERROR at chr 4 pos 4469, 1 != 0 -ERROR at chr 4 pos 4554, 1 != 0 -ERROR at chr 4 pos 4558, 1 != 0 -ERROR at chr 4 pos 4572, 1 != 0 -ERROR at chr 4 pos 4671, 1 != 0 -ERROR at chr 4 pos 4690, 1 != 0 -ERROR at chr 4 pos 4774, 1 != 0 -ERROR at chr 4 pos 4775, 1 != 0 -ERROR at chr 4 pos 4848, 1 != 0 -ERROR at chr 4 pos 4863, 1 != 0 -ERROR at chr 4 pos 4866, 1 != 0 -ERROR at chr 4 pos 5009, 1 != 0 -ERROR at chr 4 pos 5146, 1 != 0 -ERROR at chr 4 pos 5313, 1 != 0 -ERROR at chr 4 pos 5441, 1 != 0 -ERROR at chr 4 pos 5524, 1 != 0 -ERROR at chr 4 pos 5654, 1 != 0 -ERROR at chr 4 pos 5684, 1 != 0 -ERROR at chr 4 pos 5802, 1 != 0 -ERROR at chr 4 pos 5815, 1 != 0 -ERROR at chr 4 pos 5870, 1 != 0 -ERROR at chr 4 pos 5952, 1 != 0 -ERROR at chr 4 pos 6046, 1 != 0 -ERROR at chr 4 pos 6240, 1 != 0 -ERROR at chr 4 pos 6268, 1 != 0 -ERROR at chr 4 pos 6318, 1 != 0 -ERROR at chr 4 pos 6351, 1 != 0 -ERROR at chr 4 pos 6370, 1 != 0 -ERROR at chr 4 pos 6503, 1 != 0 -ERROR at chr 4 pos 6680, 1 != 0 -ERROR at chr 4 pos 6887, 1 != 0 -ERROR at chr 4 pos 6986, 1 != 0 -ERROR at chr 4 pos 7043, 1 != 0 -ERROR at chr 4 pos 7142, 1 != 0 -ERROR at chr 4 pos 7229, 1 != 0 -ERROR at chr 4 pos 7288, 1 != 0 -ERROR at chr 4 pos 7330, 1 != 0 -ERROR at chr 4 pos 7359, 1 != 0 -ERROR at chr 4 pos 7660, 1 != 0 -ERROR at chr 4 pos 7678, 1 != 0 -ERROR at chr 4 pos 7801, 1 != 0 -ERROR at chr 4 pos 7848, 1 != 0 -ERROR at chr 4 pos 7933, 1 != 0 -ERROR at chr 4 pos 7957, 1 != 0 -ERROR at chr 4 pos 7984, 1 != 0 -ERROR at chr 4 pos 7985, 1 != 0 -ERROR at chr 4 pos 8215, 1 != 0 -ERROR at chr 4 pos 8423, 1 != 0 -ERROR at chr 4 pos 8527, 1 != 0 -ERROR at chr 4 pos 8561, 1 != 0 -ERROR at chr 4 pos 8687, 1 != 0 -ERROR at chr 4 pos 8706, 1 != 0 -ERROR at chr 4 pos 8774, 1 != 0 -ERROR at chr 4 pos 8811, 1 != 0 -ERROR at chr 4 pos 8919, 1 != 0 -ERROR at chr 4 pos 8946, 1 != 0 -ERROR at chr 4 pos 8979, 1 != 0 -ERROR at chr 5 pos 138, 1 != 0 -ERROR at chr 5 pos 159, 1 != 0 -ERROR at chr 5 pos 310, 1 != 0 -ERROR at chr 5 pos 415, 1 != 0 -ERROR at chr 5 pos 471, 1 != 0 -ERROR at chr 5 pos 704, 1 != 0 -ERROR at chr 5 pos 772, 1 != 0 -ERROR at chr 5 pos 923, 1 != 0 -ERROR at chr 5 pos 1249, 1 != 0 -ERROR at chr 5 pos 1328, 1 != 0 -ERROR at chr 5 pos 1379, 1 != 0 -ERROR at chr 5 pos 1429, 1 != 0 -ERROR at chr 5 pos 1552, 1 != 0 -ERROR at chr 5 pos 1556, 1 != 0 -ERROR at chr 5 pos 1613, 1 != 0 -ERROR at chr 5 pos 1903, 1 != 0 -ERROR at chr 5 pos 2061, 1 != 0 -ERROR at chr 5 pos 2331, 1 != 0 -ERROR at chr 5 pos 2428, 1 != 0 -ERROR at chr 5 pos 2504, 1 != 0 -ERROR at chr 5 pos 2527, 1 != 0 -ERROR at chr 5 pos 2528, 1 != 0 -ERROR at chr 5 pos 2612, 1 != 0 -ERROR at chr 5 pos 2685, 1 != 0 -ERROR at chr 5 pos 2709, 1 != 0 -ERROR at chr 5 pos 2813, 1 != 0 -ERROR at chr 5 pos 2887, 1 != 0 -ERROR at chr 5 pos 2926, 1 != 0 -ERROR at chr 5 pos 3146, 1 != 0 -ERROR at chr 5 pos 3207, 1 != 0 -ERROR at chr 5 pos 3346, 1 != 0 -ERROR at chr 5 pos 3552, 1 != 0 -ERROR at chr 5 pos 3614, 1 != 0 -ERROR at chr 5 pos 3792, 1 != 0 -ERROR at chr 5 pos 3823, 1 != 0 -ERROR at chr 5 pos 3944, 1 != 0 -ERROR at chr 5 pos 4127, 1 != 0 -ERROR at chr 5 pos 4143, 1 != 0 -ERROR at chr 5 pos 4223, 1 != 0 -ERROR at chr 5 pos 4259, 1 != 0 -ERROR at chr 5 pos 4311, 1 != 0 -ERROR at chr 5 pos 4352, 1 != 0 -ERROR at chr 5 pos 4365, 1 != 0 -ERROR at chr 5 pos 4458, 1 != 0 -ERROR at chr 5 pos 4559, 1 != 0 -ERROR at chr 5 pos 4662, 1 != 0 -ERROR at chr 5 pos 4720, 1 != 0 -ERROR at chr 5 pos 4759, 1 != 0 -ERROR at chr 5 pos 4760, 1 != 0 -ERROR at chr 5 pos 4855, 1 != 0 -ERROR at chr 5 pos 5005, 1 != 0 -ERROR at chr 5 pos 5019, 1 != 0 -ERROR at chr 5 pos 5144, 1 != 0 -ERROR at chr 5 pos 5313, 1 != 0 -ERROR at chr 5 pos 5430, 1 != 0 -ERROR at chr 5 pos 5519, 1 != 0 -ERROR at chr 5 pos 5627, 1 != 0 -ERROR at chr 5 pos 5785, 1 != 0 -ERROR at chr 5 pos 5848, 1 != 0 -ERROR at chr 5 pos 5933, 1 != 0 -ERROR at chr 5 pos 6026, 1 != 0 -ERROR at chr 5 pos 6049, 1 != 0 -ERROR at chr 5 pos 6210, 1 != 0 -ERROR at chr 5 pos 6232, 1 != 0 -ERROR at chr 5 pos 6237, 1 != 0 -ERROR at chr 5 pos 6315, 1 != 0 -ERROR at chr 5 pos 6319, 1 != 0 -ERROR at chr 5 pos 6534, 1 != 0 -ERROR at chr 5 pos 6641, 1 != 0 -ERROR at chr 5 pos 6717, 1 != 0 -ERROR at chr 5 pos 6738, 1 != 0 -ERROR at chr 5 pos 6844, 1 != 0 -ERROR at chr 5 pos 6940, 1 != 0 -ERROR at chr 5 pos 7000, 1 != 0 -ERROR at chr 5 pos 7021, 1 != 0 -ERROR at chr 5 pos 7031, 1 != 0 -ERROR at chr 5 pos 7059, 1 != 0 -ERROR at chr 5 pos 7098, 1 != 0 -ERROR at chr 5 pos 7182, 1 != 0 -ERROR at chr 5 pos 7285, 1 != 0 -ERROR at chr 5 pos 7312, 1 != 0 -ERROR at chr 5 pos 7424, 1 != 0 -ERROR at chr 5 pos 7617, 1 != 0 -ERROR at chr 5 pos 7772, 1 != 0 -ERROR at chr 5 pos 7773, 1 != 0 -ERROR at chr 5 pos 7809, 1 != 0 -ERROR at chr 5 pos 7946, 1 != 0 -ERROR at chr 5 pos 7947, 1 != 0 -ERROR at chr 5 pos 7956, 1 != 0 -ERROR at chr 5 pos 8024, 1 != 0 -ERROR at chr 5 pos 8323, 1 != 0 +ERROR at chr 3 pos 2598, 1 != 0 +ERROR at chr 3 pos 2606, 1 != 0 +ERROR at chr 3 pos 2857, 1 != 0 +ERROR at chr 3 pos 3018, 1 != 0 +ERROR at chr 3 pos 3069, 1 != 0 +ERROR at chr 3 pos 3121, 1 != 0 +ERROR at chr 3 pos 3218, 1 != 0 +ERROR at chr 3 pos 3649, 1 != 0 +ERROR at chr 3 pos 3825, 1 != 0 +ERROR at chr 3 pos 4214, 1 != 0 +ERROR at chr 3 pos 4342, 1 != 0 +ERROR at chr 3 pos 4404, 1 != 0 +ERROR at chr 3 pos 4493, 1 != 0 +ERROR at chr 3 pos 4504, 1 != 0 +ERROR at chr 3 pos 4857, 1 != 0 +ERROR at chr 3 pos 5102, 1 != 0 +ERROR at chr 3 pos 5215, 1 != 0 +ERROR at chr 3 pos 5664, 1 != 0 +ERROR at chr 3 pos 5966, 1 != 0 +ERROR at chr 3 pos 6094, 1 != 0 +ERROR at chr 3 pos 6385, 1 != 0 +ERROR at chr 3 pos 6677, 1 != 0 +ERROR at chr 3 pos 6960, 1 != 0 +ERROR at chr 3 pos 7093, 1 != 0 +ERROR at chr 3 pos 7141, 1 != 0 +ERROR at chr 3 pos 7180, 1 != 0 +ERROR at chr 3 pos 7312, 1 != 0 +ERROR at chr 3 pos 7342, 1 != 0 +ERROR at chr 3 pos 7904, 1 != 0 +ERROR at chr 3 pos 8039, 1 != 0 +ERROR at chr 3 pos 8096, 1 != 0 +ERROR at chr 3 pos 8302, 1 != 0 +ERROR at chr 3 pos 8459, 1 != 0 +ERROR at chr 3 pos 8481, 1 != 0 +ERROR at chr 3 pos 8833, 1 != 0 +ERROR at chr 3 pos 8835, 1 != 0 +ERROR at chr 4 pos 120, 1 != 0 +ERROR at chr 4 pos 210, 1 != 0 +ERROR at chr 4 pos 282, 1 != 0 +ERROR at chr 4 pos 348, 1 != 0 +ERROR at chr 4 pos 1099, 1 != 0 +ERROR at chr 4 pos 1150, 1 != 0 +ERROR at chr 4 pos 1356, 1 != 0 +ERROR at chr 4 pos 1377, 1 != 0 +ERROR at chr 4 pos 1478, 1 != 0 +ERROR at chr 4 pos 2576, 1 != 0 +ERROR at chr 4 pos 2661, 1 != 0 +ERROR at chr 4 pos 3168, 1 != 0 +ERROR at chr 4 pos 3269, 1 != 0 +ERROR at chr 4 pos 3513, 1 != 0 +ERROR at chr 4 pos 3598, 1 != 0 +ERROR at chr 4 pos 3696, 1 != 0 +ERROR at chr 4 pos 3869, 1 != 0 +ERROR at chr 4 pos 4547, 1 != 0 +ERROR at chr 4 pos 4855, 1 != 0 +ERROR at chr 4 pos 5155, 1 != 0 +ERROR at chr 4 pos 5492, 1 != 0 +ERROR at chr 4 pos 5548, 1 != 0 +ERROR at chr 4 pos 5639, 1 != 0 +ERROR at chr 4 pos 5797, 1 != 0 +ERROR at chr 4 pos 6162, 1 != 0 +ERROR at chr 4 pos 7173, 1 != 0 +ERROR at chr 4 pos 7254, 1 != 0 +ERROR at chr 4 pos 7259, 1 != 0 +ERROR at chr 4 pos 7418, 1 != 0 +ERROR at chr 4 pos 7965, 1 != 0 +ERROR at chr 4 pos 8209, 1 != 0 +ERROR at chr 4 pos 8211, 1 != 0 +ERROR at chr 4 pos 8370, 1 != 0 +ERROR at chr 4 pos 8411, 1 != 0 +ERROR at chr 4 pos 8526, 1 != 0 +ERROR at chr 4 pos 8933, 1 != 0 +ERROR at chr 5 pos 116, 1 != 0 +ERROR at chr 5 pos 129, 1 != 0 +ERROR at chr 5 pos 277, 1 != 0 +ERROR at chr 5 pos 342, 1 != 0 +ERROR at chr 5 pos 396, 1 != 0 +ERROR at chr 5 pos 435, 1 != 0 +ERROR at chr 5 pos 493, 1 != 0 +ERROR at chr 5 pos 600, 1 != 0 +ERROR at chr 5 pos 716, 1 != 0 +ERROR at chr 5 pos 1094, 1 != 0 +ERROR at chr 5 pos 1362, 1 != 0 +ERROR at chr 5 pos 2416, 1 != 0 +ERROR at chr 5 pos 2639, 1 != 0 +ERROR at chr 5 pos 2642, 1 != 0 +ERROR at chr 5 pos 2650, 1 != 0 +ERROR at chr 5 pos 2890, 1 != 0 +ERROR at chr 5 pos 3058, 1 != 0 +ERROR at chr 5 pos 3250, 1 != 0 +ERROR at chr 5 pos 3349, 1 != 0 +ERROR at chr 5 pos 3688, 1 != 0 +ERROR at chr 5 pos 3863, 1 != 0 +ERROR at chr 5 pos 4038, 1 != 0 +ERROR at chr 5 pos 4351, 1 != 0 +ERROR at chr 5 pos 4539, 1 != 0 +ERROR at chr 5 pos 4675, 1 != 0 +ERROR at chr 5 pos 5042, 1 != 0 +ERROR at chr 5 pos 5143, 1 != 0 +ERROR at chr 5 pos 5161, 1 != 0 +ERROR at chr 5 pos 5207, 1 != 0 +ERROR at chr 5 pos 5255, 1 != 0 +ERROR at chr 5 pos 5261, 1 != 0 +ERROR at chr 5 pos 5634, 1 != 0 +ERROR at chr 5 pos 5682, 1 != 0 +ERROR at chr 5 pos 5718, 1 != 0 +ERROR at chr 5 pos 5866, 1 != 0 +ERROR at chr 5 pos 6158, 1 != 0 +ERROR at chr 5 pos 6742, 1 != 0 +ERROR at chr 5 pos 7114, 1 != 0 +ERROR at chr 5 pos 7239, 1 != 0 +ERROR at chr 5 pos 7398, 1 != 0 +ERROR at chr 5 pos 7963, 1 != 0 +ERROR at chr 5 pos 8030, 1 != 0 +ERROR at chr 5 pos 8099, 1 != 0 +ERROR at chr 5 pos 8113, 1 != 0 +ERROR at chr 5 pos 8198, 1 != 0 +ERROR at chr 5 pos 8200, 1 != 0 +ERROR at chr 5 pos 8357, 1 != 0 +ERROR at chr 5 pos 8509, 1 != 0 ERROR at chr 5 pos 8632, 1 != 0 -ERROR at chr 5 pos 8655, 1 != 0 -ERROR at chr 5 pos 8659, 1 != 0 -ERROR at chr 5 pos 8710, 1 != 0 -ERROR at chr 5 pos 8718, 1 != 0 -ERROR at chr 5 pos 8755, 1 != 0 -ERROR at chr 5 pos 8860, 1 != 0 -ERROR at chr 5 pos 8920, 1 != 0 +ERROR at chr 5 pos 8809, 1 != 0 Test # 0 FAILED obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg Threads = 1 @@ -3678,34 +3339,34 @@ TwoPaCo::buildGraphMain:: allocated with scalable_malloc; freeing. TwoPaCo::buildGraphMain:: Calling scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS, 0); obj-*/graphdump/graphdump -f dot example/example.dbg -k 11 > example/example.dot -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg» create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedir=src dh_prep -O--sourcedir=src dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[1]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» +make[2]: Nessuna operazione da eseguire per «preinstall». +make[2]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/graphdump -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/twopaco -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf» dh_installdocs -O--sourcedir=src dh_installchangelogs -O--sourcedir=src debian/rules override_dh_installexamples -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg» dh_installexamples --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg» debian/rules override_dh_installman -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg» dh_installman --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg» dh_installsystemduser -O--sourcedir=src dh_perl -O--sourcedir=src dh_link -O--sourcedir=src @@ -3713,7 +3374,7 @@ dh_compress -O--sourcedir=src dh_fixperms -O--sourcedir=src debian/rules override_dh_missing -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: ingresso nella directory «/build/reproducible-path/twopaco-1.0.0+dfsg» dh_missing --list-missing dh_missing: warning: CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.cpp exists in src but is not installed to anywhere @@ -3789,7 +3450,7 @@ Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: uscita dalla directory «/build/reproducible-path/twopaco-1.0.0+dfsg» dh_dwz -a -O--sourcedir=src dh_strip -a -O--sourcedir=src dh_makeshlibs -a -O--sourcedir=src @@ -3800,8 +3461,8 @@ dh_gencontrol -O--sourcedir=src dh_md5sums -O--sourcedir=src dh_builddeb -O--sourcedir=src -dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_armhf.deb'. -dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_armhf.deb'. +dpkg-deb: generazione del pacchetto "twopaco" in "../twopaco_1.0.0+dfsg-1_armhf.deb". +dpkg-deb: generazione del pacchetto "twopaco-dbgsym" in "../twopaco-dbgsym_1.0.0+dfsg-1_armhf.deb". dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3809,12 +3470,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20519/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/20168 and its subdirectories -I: Current time: Tue Jan 9 18:36:19 -12 2024 -I: pbuilder-time-stamp: 1704868579 +I: removing directory /srv/workspace/pbuilder/20519 and its subdirectories +I: Current time: Wed Jan 10 20:42:30 +14 2024 +I: pbuilder-time-stamp: 1704868950