Diff of the two buildlogs: -- --- b1/build.log 2023-05-22 07:23:37.672764716 +0000 +++ b2/build.log 2023-05-22 07:32:01.238870740 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 21 19:14:50 -12 2023 -I: pbuilder-time-stamp: 1684739690 +I: Current time: Mon May 22 21:27:30 +14 2023 +I: pbuilder-time-stamp: 1684740450 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./seqkit_2.3.1+ds.orig.tar.xz] I: copying [./seqkit_2.3.1+ds-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Sep 28 23:36:28 2022 -12 +gpgv: Signature made Fri Sep 30 01:36:28 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,135 +28,167 @@ dpkg-source: info: applying use-upstream-go-logger.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/12374/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 22 21:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='82306511f56d45a2909b2ac179b7564e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='12374' - PS1='# ' - PS2='> ' + INVOCATION_ID=64286fc0a93344e5b27c32c1f5c66e32 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32636 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R9Dx65Ys/pbuilderrc_WLWL --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R9Dx65Ys/b1 --logfile b1/build.log seqkit_2.3.1+ds-1.dsc' - SUDO_GID='112' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R9Dx65Ys/pbuilderrc_kg2Z --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R9Dx65Ys/b2 --logfile b2/build.log --extrapackages usrmerge seqkit_2.3.1+ds-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32b 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/12374/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 22 21:27 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -360,7 +392,7 @@ Get: 122 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-4 [81.1 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf samtools armhf 1.16.1-1 [575 kB] -Fetched 145 MB in 26s (5539 kB/s) +Fetched 145 MB in 13s (10.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -870,8 +902,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/seqkit-2.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqkit_2.3.1+ds-1_source.changes +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/seqkit-2.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqkit_2.3.1+ds-1_source.changes dpkg-buildpackage: info: source package seqkit dpkg-buildpackage: info: source version 2.3.1+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -889,26 +932,26 @@ dh_autoreconf -O--buildsystem=golang -O--builddirectory=build dh_auto_configure -O--buildsystem=golang -O--builddirectory=build dh_auto_build -O--buildsystem=golang -O--builddirectory=build - cd build && go install -trimpath -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd -internal/goarch + cd build && go install -trimpath -v -p 4 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd internal/unsafeheader -internal/cpu -internal/abi +internal/goarch internal/goexperiment +internal/cpu internal/goos +internal/abi runtime/internal/math runtime/internal/sys runtime/internal/syscall -internal/bytealg internal/itoa -runtime/internal/atomic math/bits +runtime/internal/atomic +internal/bytealg unicode/utf8 math internal/race sync/atomic -runtime unicode +runtime internal/nettrace image/color internal/goversion @@ -926,229 +969,229 @@ github.com/shenwei356/util/math github.com/rivo/uniseg github.com/ulikunitz/xz/internal/hash -sync internal/reflectlite +sync internal/testlog internal/singleflight -math/rand runtime/cgo +math/rand github.com/shenwei356/util/randutil -sort errors -strconv +sort io +strconv internal/oserror syscall +internal/safefilepath +path +strings reflect +github.com/biogo/biogo/feat +bytes internal/syscall/unix time -internal/fmtsort -internal/safefilepath internal/syscall/execenv -internal/poll -path +bufio +vendor/golang.org/x/net/dns/dnsmessage +regexp/syntax +hash +crypto io/fs -strings -bytes +internal/poll +context +regexp +text/tabwriter +hash/crc32 os -github.com/biogo/biogo/feat -bufio +container/heap +image +internal/fmtsort encoding/binary -context -golang.org/x/sys/unix -vendor/golang.org/x/net/dns/dnsmessage +go/build/constraint +hash/adler32 +crypto/rc4 +html +image/internal/imageutil +image/draw fmt +golang.org/x/sys/unix internal/godebug internal/intern net/netip +path/filepath +crypto/md5 github.com/biogo/biogo/alphabet -github.com/biogo/biogo/seq log +net +encoding/hex +compress/flate +github.com/biogo/biogo/seq github.com/biogo/biogo/io/seqio -github.com/biogo/biogo/seq/linear github.com/biogo/biogo/io/seqio/fasta -net +github.com/biogo/biogo/seq/linear github.com/shenwei356/seqkit/benchmark +github.com/biogo/biogo/align github.com/mattn/go-isatty github.com/mattn/go-colorable -path/filepath -regexp/syntax -hash -crypto -crypto/md5 -encoding/hex -text/tabwriter -github.com/biogo/biogo/align -regexp -compress/flate -hash/crc32 -container/heap -net/url compress/gzip -golang.org/x/term +net/url github.com/biogo/hts/bgzf -golang.org/x/crypto/ssh/terminal -golang.org/x/image/math/fixed +golang.org/x/term github.com/biogo/hts/bgzf/index +golang.org/x/image/math/fixed github.com/biogo/hts/internal -image -github.com/biogo/hts/sam -image/internal/imageutil -image/draw -github.com/biogo/hts/bam github.com/golang/freetype/raster +golang.org/x/crypto/ssh/terminal +github.com/biogo/hts/sam golang.org/x/image/font go/token github.com/golang/freetype/truetype go/scanner go/ast -log/syslog -github.com/op/go-logging -go/build/constraint +github.com/biogo/hts/bam go/doc/comment internal/lazyregexp -go/internal/typeparams internal/buildcfg +go/internal/typeparams go/parser os/exec go/doc internal/goroot io/ioutil -golang.org/x/image/draw gonum.org/v1/plot/vg/fonts +golang.org/x/image/draw +log/syslog go/build +github.com/op/go-logging golang.org/x/image/font/basicfont image/jpeg +compress/zlib +image/png gonum.org/v1/plot/vg gonum.org/v1/plot/vg/vgeps -hash/adler32 golang.org/x/image/ccitt -compress/zlib golang.org/x/image/tiff/lzw -crypto/rc4 -image/png crypto/cipher +encoding/gob golang.org/x/image/tiff +github.com/fogleman/gg crypto/internal/boring crypto/sha1 -encoding/gob -github.com/fogleman/gg encoding/base64 +encoding/xml encoding/json gonum.org/v1/plot/vg/vgimg -encoding/xml compress/lzw -image/gif -html runtime/debug +image/gif gonum.org/v1/plot/palette +github.com/ajstarks/svgo gonum.org/v1/plot/tools/bezier github.com/cespare/xxhash math/big -github.com/fsnotify/fsnotify github.com/jung-kurt/gofpdf -github.com/ajstarks/svgo gonum.org/v1/plot/vg/vgsvg +github.com/fsnotify/fsnotify github.com/iafan/cwalk crypto/internal/randutil github.com/klauspost/compress/fse +github.com/klauspost/compress/internal/snapref +github.com/klauspost/compress/flate github.com/klauspost/compress/huff0 github.com/cznic/sortutil github.com/dustin/go-humanize crypto/rand -github.com/klauspost/compress/internal/snapref -github.com/klauspost/compress/flate +github.com/logrusorgru/aurora github.com/klauspost/compress/zstd -gonum.org/v1/plot/vg/vgpdf -gonum.org/v1/plot/vg/draw -gonum.org/v1/plot -gonum.org/v1/plot/plotter github.com/klauspost/pgzip -github.com/logrusorgru/aurora -gonum.org/v1/plot/plotutil github.com/mitchellh/go-homedir github.com/pkg/errors -github.com/bsipos/thist crypto/aes crypto/des crypto/internal/nistec/fiat +gonum.org/v1/plot/vg/vgpdf crypto/internal/boring/bbig crypto/sha512 encoding/asn1 -crypto/internal/edwards25519/field -crypto/internal/edwards25519 +gonum.org/v1/plot/vg/draw +gonum.org/v1/plot vendor/golang.org/x/crypto/cryptobyte -crypto/ed25519 +gonum.org/v1/plot/plotter +crypto/internal/edwards25519/field crypto/hmac crypto/rsa +crypto/internal/edwards25519 crypto/sha256 crypto/dsa crypto/x509/pkix encoding/pem +crypto/ed25519 +crypto/internal/nistec vendor/golang.org/x/crypto/chacha20 vendor/golang.org/x/crypto/internal/poly1305 vendor/golang.org/x/crypto/curve25519/internal/field vendor/golang.org/x/crypto/chacha20poly1305 -crypto/internal/nistec +gonum.org/v1/plot/plotutil vendor/golang.org/x/crypto/hkdf vendor/golang.org/x/crypto/curve25519 vendor/golang.org/x/text/transform vendor/golang.org/x/text/unicode/bidi -vendor/golang.org/x/text/unicode/norm crypto/elliptic -vendor/golang.org/x/text/secure/bidirule +github.com/bsipos/thist +vendor/golang.org/x/text/unicode/norm net/textproto -crypto/ecdsa +vendor/golang.org/x/text/secure/bidirule vendor/golang.org/x/net/http2/hpack -crypto/x509 +crypto/ecdsa mime -vendor/golang.org/x/net/idna +crypto/x509 mime/quotedprintable -mime/multipart -vendor/golang.org/x/net/http/httpguts -vendor/golang.org/x/net/http/httpproxy net/http/internal +mime/multipart net/http/internal/ascii os/user +vendor/golang.org/x/net/idna github.com/twotwotwo/sorts -crypto/tls github.com/twotwotwo/sorts/sortutil +crypto/tls +vendor/golang.org/x/net/http/httpguts +vendor/golang.org/x/net/http/httpproxy github.com/shenwei356/util/byteutil -github.com/shenwei356/bio/seq github.com/edsrzf/mmap-go +github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/util index/suffixarray -net/http/httptrace -net/http -github.com/shenwei356/bwt -github.com/shenwei356/bwt/fmi github.com/shenwei356/util/pathutil github.com/shenwei356/natsort github.com/shenwei356/util/stringutil +github.com/shenwei356/bwt +github.com/shenwei356/bwt/fmi gopkg.in/yaml.v2 encoding/csv flag +text/template/parse github.com/spf13/pflag +net/http/httptrace +net/http +text/template github.com/smallfish/simpleyaml -text/template/parse github.com/mattn/go-runewidth github.com/tatsushid/go-prettytable github.com/ulikunitz/xz/internal/xlog -github.com/ulikunitz/xz/lzma -text/template hash/crc64 -github.com/ulikunitz/xz +github.com/ulikunitz/xz/lzma github.com/spf13/cobra -github.com/shenwei356/xopen os/signal -github.com/shenwei356/breader +github.com/ulikunitz/xz +github.com/shenwei356/xopen github.com/shenwei356/bio/seqio/fastx +github.com/shenwei356/breader github.com/shenwei356/bio/featio/gtf github.com/shenwei356/seqkit/seqkit/cmd github.com/shenwei356/seqkit/seqkit dh_auto_test -O--buildsystem=golang -O--builddirectory=build - cd build && go test -vet=off -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go test -vet=off -v -p 4 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd ? github.com/shenwei356/seqkit/benchmark [no test files] ? github.com/shenwei356/seqkit/seqkit [no test files] ? github.com/shenwei356/seqkit/seqkit/cmd [no test files] @@ -1156,14 +1199,14 @@ dh_testroot -O--buildsystem=golang -O--builddirectory=build dh_prep -O--buildsystem=golang -O--builddirectory=build debian/rules override_dh_auto_install -make[1]: Entering directory '/build/seqkit-2.3.1+ds' +make[1]: ingresso nella directory «/build/seqkit-2.3.1+ds» dh_auto_install -- --no-source cd build && mkdir -p /build/seqkit-2.3.1\+ds/debian/tmp/usr cd build && cp -r bin /build/seqkit-2.3.1\+ds/debian/tmp/usr -make[1]: Leaving directory '/build/seqkit-2.3.1+ds' +make[1]: uscita dalla directory «/build/seqkit-2.3.1+ds» dh_install -O--buildsystem=golang -O--builddirectory=build debian/rules override_dh_installdocs -make[1]: Entering directory '/build/seqkit-2.3.1+ds' +make[1]: ingresso nella directory «/build/seqkit-2.3.1+ds» # Regenerate bam and bam index files cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam @@ -1172,7 +1215,7 @@ samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai dh_installdocs -make[1]: Leaving directory '/build/seqkit-2.3.1+ds' +make[1]: uscita dalla directory «/build/seqkit-2.3.1+ds» dh_installchangelogs -O--buildsystem=golang -O--builddirectory=build dh_installman -O--buildsystem=golang -O--builddirectory=build dh_installsystemduser -O--buildsystem=golang -O--builddirectory=build @@ -1194,9 +1237,9 @@ dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--buildsystem=golang -O--builddirectory=build dh_builddeb -O--buildsystem=golang -O--builddirectory=build -dpkg-deb: building package 'seqkit' in '../seqkit_2.3.1+ds-1_armhf.deb'. -dpkg-deb: building package 'seqkit-dbgsym' in '../seqkit-dbgsym_2.3.1+ds-1_armhf.deb'. -dpkg-deb: building package 'seqkit-examples' in '../seqkit-examples_2.3.1+ds-1_all.deb'. +dpkg-deb: generazione del pacchetto "seqkit-dbgsym" in "../seqkit-dbgsym_2.3.1+ds-1_armhf.deb". +dpkg-deb: generazione del pacchetto "seqkit" in "../seqkit_2.3.1+ds-1_armhf.deb". +dpkg-deb: generazione del pacchetto "seqkit-examples" in "../seqkit-examples_2.3.1+ds-1_all.deb". dpkg-genbuildinfo --build=binary -O../seqkit_2.3.1+ds-1_armhf.buildinfo dpkg-genchanges --build=binary -O../seqkit_2.3.1+ds-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1204,12 +1247,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32636/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/12374 and its subdirectories -I: Current time: Sun May 21 19:23:34 -12 2023 -I: pbuilder-time-stamp: 1684740214 +I: removing directory /srv/workspace/pbuilder/32636 and its subdirectories +I: Current time: Mon May 22 21:31:57 +14 2023 +I: pbuilder-time-stamp: 1684740717