Diff of the two buildlogs: -- --- b1/build.log 2023-05-17 06:49:19.195149178 +0000 +++ b2/build.log 2023-05-17 07:11:42.400323536 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 16 18:40:48 -12 2023 -I: pbuilder-time-stamp: 1684305648 +I: Current time: Wed May 17 20:50:43 +14 2023 +I: pbuilder-time-stamp: 1684306243 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./python-pybedtools_0.9.0.orig.tar.gz] I: copying [./python-pybedtools_0.9.0-4.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Jan 2 09:28:23 2023 -12 +gpgv: Signature made Tue Jan 3 11:28:23 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -32,135 +32,167 @@ dpkg-source: info: applying yaml_safe_load.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18102/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/D01_modify_environment starting +debug: Running on virt32c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 17 20:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='8a1a28dc9a3242e1b0f618646ff5ee24' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18102' - PS1='# ' - PS2='> ' + INVOCATION_ID=817ab387ec7941b188001c419124cc72 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13120 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7pi7vfTK/pbuilderrc_lPES --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7pi7vfTK/b1 --logfile b1/build.log python-pybedtools_0.9.0-4.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7pi7vfTK/pbuilderrc_U2c0 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7pi7vfTK/b2 --logfile b2/build.log --extrapackages usrmerge python-pybedtools_0.9.0-4.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux jtx1c 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/18102/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 17 20:52 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -431,7 +463,7 @@ Get: 199 http://deb.debian.org/debian bookworm/main armhf unzip armhf 6.0-28 [152 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf r-base-core armhf 4.2.2.20221110-2 [25.6 MB] -Fetched 141 MB in 17s (8266 kB/s) +Fetched 141 MB in 10s (13.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -1273,8 +1305,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-pybedtools-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pybedtools_0.9.0-4_source.changes +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/python-pybedtools-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pybedtools_0.9.0-4_source.changes dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.9.0-4 dpkg-buildpackage: info: source distribution unstable @@ -1324,38 +1367,38 @@ running build_py creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools -copying pybedtools/logger.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools +copying pybedtools/paths.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools +copying pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools +copying pybedtools/stats.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools +copying pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools +copying pybedtools/logger.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools +copying pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/version.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools -copying pybedtools/paths.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools -copying pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools -copying pybedtools/stats.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/settings.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools -copying pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools -copying pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test -copying pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test -copying pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_pathlib.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test +copying pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test +copying pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test -copying pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test -copying pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_1.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test -copying pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test +copying pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test +copying pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test +copying pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/genomepy_integration.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib +copying pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib +copying pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib -copying pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib +copying pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib +copying pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib -copying pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib -copying pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib -copying pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data running egg_info @@ -1412,73 +1455,73 @@ copying pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include -copying pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.vcf.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/d.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/x.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/genome.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.cram -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/d.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/x.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/genome.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.out.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data +copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data -copying pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test @@ -1544,40 +1587,40 @@ writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension -creating build/temp.linux-aarch64-cpython-311 -creating build/temp.linux-aarch64-cpython-311/pybedtools -creating build/temp.linux-aarch64-cpython-311/pybedtools/include -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/cbedtools.o +creating build/temp.linux-armv7l-cpython-311 +creating build/temp.linux-armv7l-cpython-311/pybedtools +creating build/temp.linux-armv7l-cpython-311/pybedtools/include +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o In file included from pybedtools/cbedtools.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/include/bedFile.o +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/include/fileType.o -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/include/gzstream.o -arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/pybedtools/cbedtools.o build/temp.linux-aarch64-cpython-311/pybedtools/include/bedFile.o build/temp.linux-aarch64-cpython-311/pybedtools/include/fileType.o build/temp.linux-aarch64-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o +arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so building 'pybedtools.featurefuncs' extension -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/featurefuncs.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/featurefuncs.o +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o In file included from pybedtools/featurefuncs.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/include/bedFile.o +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/include/fileType.o -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-aarch64-cpython-311/pybedtools/include/gzstream.o -arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/pybedtools/featurefuncs.o build/temp.linux-aarch64-cpython-311/pybedtools/include/bedFile.o build/temp.linux-aarch64-cpython-311/pybedtools/include/fileType.o build/temp.linux-aarch64-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o +arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so Creating /build/python-pybedtools-0.9.0/fakehome/.local/lib/python3.11/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.9.0 to easy-install.pth file @@ -1774,12 +1817,12 @@ /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.contrib.plotting.Track.rst:155: WARNING: autosummary: failed to import Track.colorbar. Possible hints: -* ImportError: -* ModuleNotFoundError: No module named 'pybedtools.contrib.plotting.Track'; 'pybedtools.contrib.plotting' is not a package * AttributeError: type object 'Track' has no attribute 'colorbar' +* KeyError: 'Track' * ModuleNotFoundError: No module named 'Track' +* ModuleNotFoundError: No module named 'pybedtools.contrib.plotting.Track'; 'pybedtools.contrib.plotting' is not a package +* ImportError: * AttributeError: type object 'Track' has no attribute 'Track' -* KeyError: 'Track' /build/python-pybedtools-0.9.0/docs/source/topical-genome.rst:55: ERROR: Unknown target name: "genomepy". looking for now-outdated files... none found pickling environment... done @@ -2033,164 +2076,164 @@ creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11 creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/genome_registry.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/_Window.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/logger.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/filenames.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/parallel.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/version.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/paths.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/paths.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/stats.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/settings.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/filenames.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/logger.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/_Window.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/parallel.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/version.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_issues.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.cram -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/d.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/genome.fa -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.cram -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_issues.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_pathlib.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_iter.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cases.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_iter.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_1.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/genomepy_integration.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test -creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools -copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools +copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/settings.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/logger.py to logger.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/filenames.py to filenames.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/parallel.py to parallel.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/version.py to version.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/paths.py to paths.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/helpers.py to helpers.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/stats.py to stats.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/settings.py to settings.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/filenames.py to filenames.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/bedtool.py to bedtool.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/logger.py to logger.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/parallel.py to parallel.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/version.py to version.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_1.py to test_1.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/bedtool.py to bedtool.cpython-311.pyc -byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/helpers.py to helpers.cpython-311.pyc +byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/settings.py to settings.cpython-311.pyc running install_egg_info Copying pybedtools.egg-info to /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools-0.9.0.egg-info Skipping SOURCES.txt @@ -2223,10 +2266,10 @@ dpkg-gencontrol: warning: Depends field of package pybedtools-bin: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.9.0-4_all.deb'. +dpkg-deb: building package 'python-pybedtools-doc' in '../python-pybedtools-doc_0.9.0-4_all.deb'. dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.9.0-4_armhf.deb'. dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.9.0-4_armhf.deb'. -dpkg-deb: building package 'python-pybedtools-doc' in '../python-pybedtools-doc_0.9.0-4_all.deb'. +dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.9.0-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pybedtools_0.9.0-4_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pybedtools_0.9.0-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2234,12 +2277,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13120/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18102 and its subdirectories -I: Current time: Tue May 16 18:49:09 -12 2023 -I: pbuilder-time-stamp: 1684306149 +I: removing directory /srv/workspace/pbuilder/13120 and its subdirectories +I: Current time: Wed May 17 21:11:38 +14 2023 +I: pbuilder-time-stamp: 1684307498