Diff of the two buildlogs: -- --- b1/build.log 2023-05-06 09:30:08.235234276 +0000 +++ b2/build.log 2023-05-06 09:34:21.020150062 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 5 21:16:37 -12 2023 -I: pbuilder-time-stamp: 1683364597 +I: Current time: Sat May 6 23:30:26 +14 2023 +I: pbuilder-time-stamp: 1683365426 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./parasail_2.6+dfsg.orig.tar.xz] I: copying [./parasail_2.6+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Fri Sep 9 22:13:45 2022 -12 +gpgv: Signature made Sun Sep 11 00:13:45 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -29,135 +29,167 @@ dpkg-source: info: applying nonx86 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23959/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 6 23:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='efbe785456a14a2b8c1f0d8df9b68c30' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23959' - PS1='# ' - PS2='> ' + INVOCATION_ID=5df139956ed84eeba1444c593735a8a6 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=9467 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/pbuilderrc_0sWy --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/b1 --logfile b1/build.log parasail_2.6+dfsg-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/pbuilderrc_IcyG --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/b2 --logfile b2/build.log --extrapackages usrmerge parasail_2.6+dfsg-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4pro0 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin - total 5096 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/23959/tmp/hooks/D02_print_environment finished + total 5072 + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 6 23:30 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -248,7 +280,7 @@ Get: 47 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libhts-dev armhf 1.16+ds-3 [1517 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libsimde-dev all 0.7.4~rc2-2 [377 kB] -Fetched 23.3 MB in 2s (10.2 MB/s) +Fetched 23.3 MB in 2s (11.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -458,8 +490,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/parasail-2.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parasail_2.6+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/parasail-2.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../parasail_2.6+dfsg-1_source.changes dpkg-buildpackage: info: source package parasail dpkg-buildpackage: info: source version 2.6+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -506,7 +549,7 @@ checking whether make supports nested variables... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a race-free mkdir -p... /bin/mkdir -p +checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -529,7 +572,7 @@ checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for C compiler vendor... gnu -checking for a sed that does not truncate output... /bin/sed +checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 12.2.0 checking for stdio.h... yes checking for stdlib.h... yes @@ -608,7 +651,7 @@ checking for library containing sqrt... -lm checking for zlib.h... yes checking for library containing gzopen... -lz -checking for grep that handles long lines and -e... /bin/grep +checking for grep that handles long lines and -e... /usr/bin/grep checking whether C compiler supports visibility flag... -fvisibility=hidden configure: configure: C++ compiler @@ -626,9 +669,9 @@ configure: Libtool setup configure: checking how to print strings... printf -checking for a sed that does not truncate output... (cached) /bin/sed -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... (cached) /usr/bin/sed +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B @@ -649,8 +692,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes @@ -775,33 +818,41 @@ make[1]: Leaving directory '/build/parasail-2.6+dfsg' dh_auto_build - make -j3 + make -j4 make[1]: Entering directory '/build/parasail-2.6+dfsg' make all-am make[2]: Entering directory '/build/parasail-2.6+dfsg' gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o apps/parasail_stats.o apps/parasail_stats.c g++ -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o apps/parasail_aligner-parasail_aligner.o `test -f 'apps/parasail_aligner.cpp' || echo './'`apps/parasail_aligner.cpp gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/getMemorySize.o contrib/getMemorySize.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cigar.c -fPIC -DPIC -o src/.libs/libparasail_la-cigar.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cpuid.c -fPIC -DPIC -o src/.libs/libparasail_la-cpuid.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/function_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-function_lookup.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/io.c -fPIC -DPIC -o src/.libs/libparasail_la-io.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/isastubs.c -fPIC -DPIC -o src/.libs/libparasail_la-isastubs.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/matrix_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-matrix_lookup.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/memory.c -fPIC -DPIC -o src/.libs/libparasail_la-memory.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/parser.c -fPIC -DPIC -o src/.libs/libparasail_la-parser.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/pssw.c -fPIC -DPIC -o src/.libs/libparasail_la-pssw.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/time.c -fPIC -DPIC -o src/.libs/libparasail_la-time.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-nw_dispatch.lo `test -f 'src/nw_dispatch.c' || echo './'`src/nw_dispatch.c In file included from /usr/include/c++/12/vector:70, from apps/parasail_aligner.cpp:52: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-nw_dispatch.o In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:425:22: @@ -844,6 +895,7 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dispatch.lo `test -f 'src/sg_dispatch.c' || echo './'`src/sg_dispatch.c In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'std::vector calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector&, const std::vector&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:425:22: @@ -886,167 +938,158 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/parser.c -fPIC -DPIC -o src/.libs/libparasail_la-parser.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/pssw.c -fPIC -DPIC -o src/.libs/libparasail_la-pssw.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/time.c -fPIC -DPIC -o src/.libs/libparasail_la-time.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-nw_dispatch.lo `test -f 'src/nw_dispatch.c' || echo './'`src/nw_dispatch.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dispatch.lo `test -f 'src/sg_dispatch.c' || echo './'`src/sg_dispatch.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-nw_dispatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_dispatch.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sw_dispatch.lo `test -f 'src/sw_dispatch.c' || echo './'`src/sw_dispatch.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_scan.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat 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src/.libs/libparasail_novec_rowcol_la-sw_stats.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib 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--tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec.a src/.libs/libparasail_novec_la-nw.o src/.libs/libparasail_novec_la-sg.o src/.libs/libparasail_novec_la-sw.o src/.libs/libparasail_novec_la-nw_scan.o src/.libs/libparasail_novec_la-sg_scan.o src/.libs/libparasail_novec_la-sw_scan.o src/.libs/libparasail_novec_la-nw_banded.o src/.libs/libparasail_novec_la-nw_stats.o src/.libs/libparasail_novec_la-sg_stats.o src/.libs/libparasail_novec_la-sw_stats.o src/.libs/libparasail_novec_la-nw_stats_scan.o src/.libs/libparasail_novec_la-sg_stats_scan.o src/.libs/libparasail_novec_la-sw_stats_scan.o src/.libs/libparasail_novec_la-nw_trace.o src/.libs/libparasail_novec_la-sg_trace.o src/.libs/libparasail_novec_la-sw_trace.o src/.libs/libparasail_novec_la-nw_trace_scan.o src/.libs/libparasail_novec_la-sg_trace_scan.o src/.libs/libparasail_novec_la-sw_trace_scan.o libtool: link: ranlib .libs/libparasail_novec.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec.la" && ln -s "../libparasail_novec.la" "libparasail_novec.la" ) -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_table.la src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec_table.a src/.libs/libparasail_novec_table_la-nw.o src/.libs/libparasail_novec_table_la-sg.o src/.libs/libparasail_novec_table_la-sw.o src/.libs/libparasail_novec_table_la-nw_scan.o src/.libs/libparasail_novec_table_la-sg_scan.o src/.libs/libparasail_novec_table_la-sw_scan.o src/.libs/libparasail_novec_table_la-nw_banded.o src/.libs/libparasail_novec_table_la-nw_stats.o src/.libs/libparasail_novec_table_la-sg_stats.o src/.libs/libparasail_novec_table_la-sw_stats.o src/.libs/libparasail_novec_table_la-nw_stats_scan.o src/.libs/libparasail_novec_table_la-sg_stats_scan.o src/.libs/libparasail_novec_table_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_table.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_table.la" && ln -s "../libparasail_novec_table.la" "libparasail_novec_table.la" ) -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec_rowcol.a src/.libs/libparasail_novec_rowcol_la-nw.o src/.libs/libparasail_novec_rowcol_la-sg.o src/.libs/libparasail_novec_rowcol_la-sw.o src/.libs/libparasail_novec_rowcol_la-nw_scan.o src/.libs/libparasail_novec_rowcol_la-sg_scan.o src/.libs/libparasail_novec_rowcol_la-sw_scan.o src/.libs/libparasail_novec_rowcol_la-nw_banded.o src/.libs/libparasail_novec_rowcol_la-nw_stats.o src/.libs/libparasail_novec_rowcol_la-sg_stats.o src/.libs/libparasail_novec_rowcol_la-sw_stats.o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_rowcol.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_rowcol.la" && ln -s "../libparasail_novec_rowcol.la" "libparasail_novec_rowcol.la" ) -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -version-info 9:0:1 -Wl,-z,relro -Wl,-z,now -o libparasail.la -rpath /usr/lib/arm-linux-gnueabihf src/libparasail_la-cigar.lo src/libparasail_la-cpuid.lo src/libparasail_la-function_lookup.lo src/libparasail_la-io.lo src/libparasail_la-isastubs.lo src/libparasail_la-matrix_lookup.lo src/libparasail_la-memory.lo src/libparasail_la-parser.lo src/libparasail_la-pssw.lo src/libparasail_la-time.lo src/libparasail_la-nw_dispatch.lo src/libparasail_la-sg_dispatch.lo src/libparasail_la-sw_dispatch.lo src/libparasail_la-sg_qb_dispatch.lo src/libparasail_la-sg_qe_dispatch.lo src/libparasail_la-sg_qx_dispatch.lo src/libparasail_la-sg_db_dispatch.lo src/libparasail_la-sg_de_dispatch.lo src/libparasail_la-sg_dx_dispatch.lo src/libparasail_la-sg_qb_de_dispatch.lo src/libparasail_la-sg_qe_db_dispatch.lo src/libparasail_la-sg_qb_db_dispatch.lo src/libparasail_la-sg_qe_de_dispatch.lo src/libparasail_la-dispatch_profile.lo src/libparasail_la-satcheck.lo src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo -libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-sg_qb_db_dispatch.o src/.libs/libparasail_la-sg_qe_de_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libparasail.so.8 -o .libs/libparasail.so.8.1.0 +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo libtool: link: ar cr tests/.libs/libsais.a contrib/sais-lite-lcp/.libs/sais.o libtool: link: ranlib tests/.libs/libsais.a libtool: link: ( cd "tests/.libs" && rm -f "libsais.la" && ln -s "../libsais.la" "libsais.la" ) +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -version-info 9:0:1 -Wl,-z,relro -Wl,-z,now -o libparasail.la -rpath /usr/lib/arm-linux-gnueabihf src/libparasail_la-cigar.lo src/libparasail_la-cpuid.lo src/libparasail_la-function_lookup.lo src/libparasail_la-io.lo src/libparasail_la-isastubs.lo src/libparasail_la-matrix_lookup.lo src/libparasail_la-memory.lo src/libparasail_la-parser.lo src/libparasail_la-pssw.lo src/libparasail_la-time.lo src/libparasail_la-nw_dispatch.lo src/libparasail_la-sg_dispatch.lo src/libparasail_la-sw_dispatch.lo src/libparasail_la-sg_qb_dispatch.lo src/libparasail_la-sg_qe_dispatch.lo src/libparasail_la-sg_qx_dispatch.lo src/libparasail_la-sg_db_dispatch.lo src/libparasail_la-sg_de_dispatch.lo src/libparasail_la-sg_dx_dispatch.lo src/libparasail_la-sg_qb_de_dispatch.lo src/libparasail_la-sg_qe_db_dispatch.lo src/libparasail_la-sg_qb_db_dispatch.lo src/libparasail_la-sg_qe_de_dispatch.lo src/libparasail_la-dispatch_profile.lo src/libparasail_la-satcheck.lo src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz +libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-sg_qb_db_dispatch.o src/.libs/libparasail_la-sg_qe_de_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libparasail.so.8 -o .libs/libparasail.so.8.1.0 libtool: link: (cd ".libs" && rm -f "libparasail.so.8" && ln -s "libparasail.so.8.1.0" "libparasail.so.8") libtool: link: (cd ".libs" && rm -f "libparasail.so" && ln -s "libparasail.so.8.1.0" "libparasail.so") libtool: link: ( cd ".libs" && rm -f "libparasail.la" && ln -s "../libparasail.la" "libparasail.la" ) -/bin/bash ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la +/bin/sh ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_stats apps/parasail_stats.o ./.libs/libparasail.so -lm -lz libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o ./.libs/libparasail.so -lm -lz tests/.libs/libsais.a -fopenmp make[2]: Leaving directory '/build/parasail-2.6+dfsg' make[1]: Leaving directory '/build/parasail-2.6+dfsg' dh_auto_test - make -j3 test "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 + make -j4 test "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/parasail-2.6+dfsg' make tests/traceback tests/test_align tests/test_basic tests/test_gcups tests/test_io tests/test_isa tests/test_matrix tests/test_pssm tests/test_query tests/test_sw_dispatch tests/test_verify tests/test_verify_tables tests/test_verify_rowcols tests/test_verify_traces tests/test_verify_cigars tests/test_12 tests/test_64 tests/test_p29 tests/test_p59 tests/libsais.la make[2]: Entering directory '/build/parasail-2.6+dfsg' @@ -1074,6 +1117,7 @@ gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify-test_verify.o `test -f 'tests/test_verify.c' || echo './'`tests/test_verify.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_tables-test_verify_tables.o `test -f 'tests/test_verify_tables.c' || echo './'`tests/test_verify_tables.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_rowcols-test_verify_rowcols.o `test -f 'tests/test_verify_rowcols.c' || echo './'`tests/test_verify_rowcols.c +gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c tests/test_verify.c: In function 'main': tests/test_verify.c:310:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 310 | int do_neon = 1; @@ -1106,7 +1150,6 @@ tests/test_verify_tables.c:324:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 324 | int do_sse2 = 1; | ^~~~~~~ -gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_cigars-test_verify_cigars.o `test -f 'tests/test_verify_cigars.c' || echo './'`tests/test_verify_cigars.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_12.o tests/test_12.c tests/test_verify_traces.c: In function 'check_functions': @@ -1137,6 +1180,9 @@ tests/test_verify_traces.c:235:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 235 | int do_sse2 = 1; | ^~~~~~~ +gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c +gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c +gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c tests/test_verify_cigars.c: In function 'main': tests/test_verify_cigars.c:311:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 311 | int do_neon = 1; @@ -1153,14 +1199,8 @@ tests/test_verify_cigars.c:307:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 307 | int do_sse2 = 1; | ^~~~~~~ -gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c -gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c -gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la -libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz -libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la In file included from tests/test_p59.c:33: tests/test_p59.h: In function 'main': tests/test_p59.h:513:1: warning: string length '51025' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] @@ -1181,45 +1221,48 @@ | | | | long int int64_t {aka long long int} | %lld -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la +libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la +libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_basic tests/test_basic.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_gcups tests/test_gcups.o ./.libs/libparasail.so -lm -lz +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_io tests/test_io.o ./.libs/libparasail.so -lm -lz -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_isa tests/test_isa.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_matrix tests/test_matrix.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_pssm tests/test_pssm.o ./.libs/libparasail.so -lm -lz -/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_query tests/test_query-test_query.o ./.libs/libparasail.so -lm -lz -fopenmp +/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_sw_dispatch tests/test_sw_dispatch.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify tests/test_verify-test_verify.o ./.libs/libparasail.so -lm -lz -fopenmp -/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la -libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp +/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o ./.libs/libparasail.so -lm -lz -fopenmp +libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp +/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_traces tests/test_verify_traces-test_verify_traces.o ./.libs/libparasail.so -lm -lz -fopenmp -/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o ./.libs/libparasail.so -lm -lz -fopenmp +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_12 tests/test_12.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_64 tests/test_64.o ./.libs/libparasail.so -lm -lz -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p29 tests/test_p29.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p59 tests/test_p59.o ./.libs/libparasail.so -lm -lz make[2]: Leaving directory '/build/parasail-2.6+dfsg' make check-TESTS make[2]: Entering directory '/build/parasail-2.6+dfsg' make[3]: Entering directory '/build/parasail-2.6+dfsg' -PASS: tests/test_basic PASS: tests/test_isa +PASS: tests/test_basic ============================================================================ Testsuite summary for Pairwise Sequence Alignment Library 2.6.0 ============================================================================ @@ -1240,29 +1283,29 @@ make -j1 install DESTDIR=/build/parasail-2.6\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/parasail-2.6+dfsg' make[2]: Entering directory '/build/parasail-2.6+dfsg' - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' - /bin/bash ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' + /bin/sh ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libparasail.so.8.1.0 /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.0 libtool: install: (cd /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.0 libparasail.so.8 || { rm -f libparasail.so.8 && ln -s libparasail.so.8.1.0 libparasail.so.8; }; }) libtool: install: (cd /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.0 libparasail.so || { rm -f libparasail.so && ln -s libparasail.so.8.1.0 libparasail.so; }; }) libtool: install: /usr/bin/install -c .libs/libparasail.lai /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/parasail-2.6+dfsg/debian/tmp/usr/bin' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/bin' + /bin/sh ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/parasail-2.6+dfsg/debian/tmp/usr/bin' libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_aligner /build/parasail-2.6+dfsg/debian/tmp/usr/bin/parasail_aligner libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c apps/.libs/parasail_stats /build/parasail-2.6+dfsg/debian/tmp/usr/bin/parasail_stats - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 parasail.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include' - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include' - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/blosum100.h parasail/matrices/blosum30.h parasail/matrices/blosum35.h parasail/matrices/blosum40.h parasail/matrices/blosum45.h parasail/matrices/blosum50.h parasail/matrices/blosum55.h parasail/matrices/blosum60.h parasail/matrices/blosum62.h parasail/matrices/blosum65.h parasail/matrices/blosum70.h parasail/matrices/blosum75.h parasail/matrices/blosum80.h parasail/matrices/blosum85.h parasail/matrices/blosum90.h parasail/matrices/blosum_map.h parasail/matrices/blosumn.h parasail/matrices/dnafull.h parasail/matrices/nuc44.h parasail/matrices/pam10.h parasail/matrices/pam100.h parasail/matrices/pam110.h parasail/matrices/pam120.h parasail/matrices/pam130.h parasail/matrices/pam140.h parasail/matrices/pam150.h parasail/matrices/pam160.h parasail/matrices/pam170.h parasail/matrices/pam180.h parasail/matrices/pam190.h parasail/matrices/pam20.h parasail/matrices/pam200.h parasail/matrices/pam210.h parasail/matrices/pam220.h parasail/matrices/pam230.h parasail/matrices/pam240.h parasail/matrices/pam250.h parasail/matrices/pam260.h parasail/matrices/pam270.h parasail/matrices/pam280.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail' /usr/bin/install -c -m 644 parasail/cpuid.h parasail/io.h parasail/function_lookup.h parasail/matrix_lookup.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail' - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/pam290.h parasail/matrices/pam30.h parasail/matrices/pam300.h parasail/matrices/pam310.h parasail/matrices/pam320.h parasail/matrices/pam330.h parasail/matrices/pam340.h parasail/matrices/pam350.h parasail/matrices/pam360.h parasail/matrices/pam370.h parasail/matrices/pam380.h parasail/matrices/pam390.h parasail/matrices/pam40.h parasail/matrices/pam400.h parasail/matrices/pam410.h parasail/matrices/pam420.h parasail/matrices/pam430.h parasail/matrices/pam440.h parasail/matrices/pam450.h parasail/matrices/pam460.h parasail/matrices/pam470.h parasail/matrices/pam480.h parasail/matrices/pam490.h parasail/matrices/pam50.h parasail/matrices/pam500.h parasail/matrices/pam60.h parasail/matrices/pam70.h parasail/matrices/pam80.h parasail/matrices/pam90.h parasail/matrices/pam_map.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices' - /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' + /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 parasail-1.pc '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[2]: Leaving directory '/build/parasail-2.6+dfsg' make[1]: Leaving directory '/build/parasail-2.6+dfsg' @@ -1321,8 +1364,8 @@ dpkg-gencontrol: warning: package libparasail-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'libparasail-dev' in '../libparasail-dev_2.6+dfsg-1_armhf.deb'. +dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'parasail-dbgsym' in '../parasail-dbgsym_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'parasail' in '../parasail_2.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'libparasail8' in '../libparasail8_2.6+dfsg-1_armhf.deb'. @@ -1333,12 +1376,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/9467/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23959 and its subdirectories -I: Current time: Fri May 5 21:30:03 -12 2023 -I: pbuilder-time-stamp: 1683365403 +I: removing directory /srv/workspace/pbuilder/9467 and its subdirectories +I: Current time: Sat May 6 23:34:17 +14 2023 +I: pbuilder-time-stamp: 1683365657