Diff of the two buildlogs: -- --- b1/build.log 2023-05-13 15:04:33.299625545 +0000 +++ b2/build.log 2023-05-13 15:13:20.136516344 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 13 02:48:10 -12 2023 -I: pbuilder-time-stamp: 1683989290 +I: Current time: Sun May 14 05:04:47 +14 2023 +I: pbuilder-time-stamp: 1683990287 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./pairtools_1.0.2.orig.tar.gz] I: copying [./pairtools_1.0.2-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Jan 2 07:23:53 2023 -12 +gpgv: Signature made Tue Jan 3 09:23:53 2023 +14 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pairtools_1.0.2-2.dsc: no acceptable signature found @@ -32,135 +32,167 @@ dpkg-source: info: applying do-not-run-coverage.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/22394/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 14 05:05 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='a23f3c7a13e2490eb2b805cb7074c5b6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='22394' - PS1='# ' - PS2='> ' + INVOCATION_ID=11848eda0ad34e3eb37650e452176baa + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14109 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gh1IW9hB/pbuilderrc_IhQS --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gh1IW9hB/b1 --logfile b1/build.log pairtools_1.0.2-2.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gh1IW9hB/pbuilderrc_J2lx --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gh1IW9hB/b2 --logfile b2/build.log --extrapackages usrmerge pairtools_1.0.2-2.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32a 5.10.0-22-armmp-lpae #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/22394/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 14 05:05 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -392,7 +424,7 @@ Get: 166 http://deb.debian.org/debian bookworm/main armhf python3-pytest all 7.2.1-2 [236 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf python3-yaml armhf 6.0-3+b2 [111 kB] -Fetched 105 MB in 5s (20.8 MB/s) +Fetched 105 MB in 25s (4195 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -1092,8 +1124,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/pairtools-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pairtools_1.0.2-2_source.changes +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/pairtools-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pairtools_1.0.2-2_source.changes dpkg-buildpackage: info: source package pairtools dpkg-buildpackage: info: source version 1.0.2-2 dpkg-buildpackage: info: source distribution unstable @@ -1112,9 +1155,9 @@ tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pairtools-1.0.2/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) -Compiling /build/pairtools-1.0.2/pairtools/lib/regions.pyx because it changed. Compiling /build/pairtools-1.0.2/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/pairtools-1.0.2/pairtools/lib/parse_pysam.pyx because it changed. +Compiling /build/pairtools-1.0.2/pairtools/lib/regions.pyx because it changed. [1/3] Cythonizing /build/pairtools-1.0.2/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/pairtools-1.0.2/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/pairtools-1.0.2/pairtools/lib/regions.pyx @@ -1138,9 +1181,9 @@ tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pairtools-1.0.2/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) -Compiling /build/pairtools-1.0.2/pairtools/lib/regions.pyx because it changed. Compiling /build/pairtools-1.0.2/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/pairtools-1.0.2/pairtools/lib/parse_pysam.pyx because it changed. +Compiling /build/pairtools-1.0.2/pairtools/lib/regions.pyx because it changed. [1/3] Cythonizing /build/pairtools-1.0.2/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/pairtools-1.0.2/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/pairtools-1.0.2/pairtools/lib/regions.pyx @@ -1151,57 +1194,47 @@ running build_py creating /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools copying pairtools/_logging.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools -copying pairtools/__init__.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools copying pairtools/__main__.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools +copying pairtools/__init__.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools +creating /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/select.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/phase.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/restrict.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/sort.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/filterbycov.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/header.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/merge.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/markasdup.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/__init__.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/dedup.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/sample.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/parse.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/scaling.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/parse2.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/flip.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/split.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/cli/stats.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli creating /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/select.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib -copying pairtools/lib/pairsam_format.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib -copying pairtools/lib/headerops.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib -copying pairtools/lib/stats.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib -copying pairtools/lib/dedup.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib -copying pairtools/lib/scaling.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/fileio.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/phase.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib +copying pairtools/lib/restrict.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/filterbycov.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/__init__.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib +copying pairtools/lib/dedup.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib +copying pairtools/lib/pairsam_format.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/parse.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib -copying pairtools/lib/restrict.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib -creating /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/select.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/sample.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/split.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/parse2.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/stats.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/dedup.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/scaling.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/header.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/phase.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/filterbycov.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/__init__.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/markasdup.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/sort.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/flip.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/parse.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/restrict.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli -copying pairtools/cli/merge.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli +copying pairtools/lib/headerops.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib +copying pairtools/lib/scaling.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib +copying pairtools/lib/stats.py -> /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib running build_ext -building 'pairtools.lib.regions' extension +building 'pairtools.lib.dedup_cython' extension creating build creating build/temp.linux-armhf-cpython-311 creating build/temp.linux-armhf-cpython-311/build creating build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2 creating build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools creating build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pairtools-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/pairtools-1.0.2/pairtools/lib/regions.cpp -o build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib/regions.o -In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, - from /usr/include/python3.11/numpy/ndarrayobject.h:12, - from /usr/include/python3.11/numpy/arrayobject.h:5, - from /build/pairtools-1.0.2/pairtools/lib/regions.cpp:796: -/usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] - 17 | #warning "Using deprecated NumPy API, disable it with " \ - | ^~~~~~~ -arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pairtools-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib/regions.o -L/usr/lib/arm-linux-gnueabihf -o /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-arm-linux-gnueabihf.so -building 'pairtools.lib.dedup_cython' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pairtools-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/pairtools-1.0.2/pairtools/lib/dedup_cython.c -o build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib/dedup_cython.o In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, @@ -1214,6 +1247,16 @@ building 'pairtools.lib.parse_pysam' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pairtools-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/pairtools-1.0.2/pairtools/lib/parse_pysam.c -o build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib/parse_pysam.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pairtools-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib/parse_pysam.o -L/usr/lib/arm-linux-gnueabihf -o /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/parse_pysam.cpython-311-arm-linux-gnueabihf.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so +building 'pairtools.lib.regions' extension +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pairtools-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/pairtools-1.0.2/pairtools/lib/regions.cpp -o build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib/regions.o +In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, + from /usr/include/python3.11/numpy/ndarrayobject.h:12, + from /usr/include/python3.11/numpy/arrayobject.h:5, + from /build/pairtools-1.0.2/pairtools/lib/regions.cpp:796: +/usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] + 17 | #warning "Using deprecated NumPy API, disable it with " \ + | ^~~~~~~ +arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pairtools-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/build/pairtools-1.0.2/pairtools/lib/regions.o -L/usr/lib/arm-linux-gnueabihf -o /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-arm-linux-gnueabihf.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/pairtools-1.0.2' dh_auto_test -- --system=custom --test-args="export CURPY={interpreter}; \ @@ -1267,7 +1310,7 @@ """Extract the name of the tile for each read name in the series -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================== 31 passed, 2 warnings in 243.33s (0:04:03) ================== +================== 31 passed, 2 warnings in 113.11s (0:01:53) ================== make[1]: Leaving directory '/build/pairtools-1.0.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1286,116 +1329,116 @@ creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11 creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.merged_chromsizes.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.no_chromsizes.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.merged_no_chromsizes.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.merged_chromsizes.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools +creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/select.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/phase.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/restrict.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/sort.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/filterbycov.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/header.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/merge.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/markasdup.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__init__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/dedup.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/sample.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/parse.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/scaling.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/parse2.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/flip.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/split.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli +creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/restrict.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/dedup.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/merge.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/phase.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/select.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/header.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sample.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/flip.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/scaling.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/split.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/__init__.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse2.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/markasdup.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/stats.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/filterbycov.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sort.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/stats.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/select.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/fileio.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/phase.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/dedup_cython.cpython-311-arm-linux-gnueabihf.so -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/restrict.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-arm-linux-gnueabihf.so -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/filterbycov.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/parse_pysam.cpython-311-arm-linux-gnueabihf.so -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__init__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/dedup.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/pairsam_format.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/parse.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/headerops.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/scaling.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/fileio.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/filterbycov.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/pairsam_format.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/stats.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/restrict.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/scaling.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/dedup.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/__init__.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/parse.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/headerops.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/select.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/phase.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/parse_pysam.cpython-311-arm-linux-gnueabihf.so -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-arm-linux-gnueabihf.so -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/headerops.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/dedup_cython.cpython-311-arm-linux-gnueabihf.so -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/fileio.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/pairsam_format.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/select.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/parse.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/scaling.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/__init__.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/stats.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/filterbycov.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/stats.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/dedup.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/scaling.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/fileio.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/phase.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/filterbycov.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/__init__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/parse.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/lib/restrict.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/_logging.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__main__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__init__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ +copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__pycache__/__main__.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__pycache__/_logging.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__pycache__/__init__.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__pycache__/__main__.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ -creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/select.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/sample.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -creating /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sort.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse2.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/filterbycov.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/merge.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/markasdup.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/stats.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/restrict.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/split.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/scaling.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/dedup.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/__init__.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/flip.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/header.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sample.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/select.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/phase.cpython-311.pyc -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/split.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/parse2.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/stats.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/dedup.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/scaling.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/header.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/phase.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/filterbycov.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/__init__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/markasdup.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/sort.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/flip.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/parse.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/restrict.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/cli/merge.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/_logging.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__init__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/pairtools/__main__.py -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.merged_mixed.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.merged_no_chromsizes.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages -copying /build/pairtools-1.0.2/.pybuild/cpython3_3.11/build/mock.stats -> /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/select.py to select.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/phase.py to phase.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/restrict.py to restrict.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sort.py to sort.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/filterbycov.py to filterbycov.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/header.py to header.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/merge.py to merge.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/dedup.py to dedup.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sample.py to sample.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse.py to parse.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/scaling.py to scaling.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse2.py to parse2.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/flip.py to flip.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/split.py to split.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/stats.py to stats.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/select.py to select.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/headerops.py to headerops.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/stats.py to stats.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/dedup.py to dedup.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/scaling.py to scaling.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/fileio.py to fileio.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/phase.py to phase.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/restrict.py to restrict.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/filterbycov.py to filterbycov.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/dedup.py to dedup.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/parse.py to parse.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/restrict.py to restrict.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/select.py to select.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sample.py to sample.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/split.py to split.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse2.py to parse2.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/stats.py to stats.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/dedup.py to dedup.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/scaling.py to scaling.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/header.py to header.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/phase.py to phase.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/filterbycov.py to filterbycov.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sort.py to sort.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/flip.py to flip.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse.py to parse.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/restrict.py to restrict.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/merge.py to merge.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/headerops.py to headerops.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/scaling.py to scaling.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/stats.py to stats.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/_logging.py to _logging.cpython-311.pyc -byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__main__.py to __main__.cpython-311.pyc +byte-compiling /build/pairtools-1.0.2/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info creating pairtools.egg-info @@ -1448,9 +1491,9 @@ dpkg-gencontrol: warning: package python3-pairtools-examples: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild +dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.0.2-2_armhf.deb'. dpkg-deb: building package 'python3-pairtools-dbgsym' in '../python3-pairtools-dbgsym_1.0.2-2_armhf.deb'. dpkg-deb: building package 'python3-pairtools' in '../python3-pairtools_1.0.2-2_armhf.deb'. -dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.0.2-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../pairtools_1.0.2-2_armhf.buildinfo dpkg-genchanges --build=binary -O../pairtools_1.0.2-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1458,12 +1501,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14109/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/22394 and its subdirectories -I: Current time: Sat May 13 03:04:29 -12 2023 -I: pbuilder-time-stamp: 1683990269 +I: removing directory /srv/workspace/pbuilder/14109 and its subdirectories +I: Current time: Sun May 14 05:13:16 +14 2023 +I: pbuilder-time-stamp: 1683990796