Diff of the two buildlogs: -- --- b1/build.log 2023-06-07 05:45:19.509194987 +0000 +++ b2/build.log 2023-06-07 05:50:53.394587074 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jun 6 17:41:15 -12 2023 -I: pbuilder-time-stamp: 1686116475 +I: Current time: Wed Jun 7 19:45:34 +14 2023 +I: pbuilder-time-stamp: 1686116734 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Oct 14 00:22:50 2021 -12 +gpgv: Signature made Fri Oct 15 02:22:50 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key @@ -33,135 +33,167 @@ dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5119/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 7 19:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='857a7c0dcbff4056a56f3f2a2aa7fd67' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5119' - PS1='# ' - PS2='> ' + INVOCATION_ID=75137e5962b545acbce2f69bd61c9cb2 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=19608 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aHmMIwPa/pbuilderrc_zLKP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aHmMIwPa/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aHmMIwPa/pbuilderrc_3CHY --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aHmMIwPa/b2 --logfile b2/build.log --extrapackages usrmerge ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64a 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/5119/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 7 19:46 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -270,7 +302,7 @@ Get: 59 http://deb.debian.org/debian bookworm/main armhf libssw0 armhf 1.1-13 [21.2 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libssw-dev armhf 1.1-13 [24.3 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] -Fetched 34.8 MB in 1s (24.9 MB/s) +Fetched 34.8 MB in 4s (7932 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) @@ -528,8 +560,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -539,10 +582,10 @@ debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' +make[1]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg» dh_auto_clean rm -rf bin -make[1]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' +make[1]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg» dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary @@ -601,36 +644,36 @@ -- Build files have been written to: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf dh_auto_build -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 -make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 +make[1]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' -make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» +make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build +make[3]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && touch /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp -make[3]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' -[ 8%] Built target recompile_always -[ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -[ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» +[ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o +[ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrix.cpp -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp -[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -MF CMakeFiles/ngmlr.dir/ArgParser.cpp.o.d -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ArgParser.cpp +[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp +[ 12%] Built target recompile_always [ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o -[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp +[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp @@ -644,12 +687,6 @@ cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp -/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); - | ^ -/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); - | ^~~~~~~~ /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, @@ -668,6 +705,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); + | ^ +/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); + | ^~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o @@ -686,6 +729,13 @@ cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp +/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: +/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] + 17 | throw "Elements left in buffer!"; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ +[ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp In file included from /usr/include/c++/12/map:60, from /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.h:9, from /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:5: @@ -693,11 +743,6 @@ /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: -/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] - 17 | throw "Elements left in buffer!"; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ In file included from /usr/include/c++/12/map:61: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = _SequenceProvider::RefIdx; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void _SequenceProvider::Init(bool)’ at /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:349:16: @@ -753,12 +798,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp +[ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o +cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp In file included from /usr/include/c++/12/map:60, from /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:17: /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: @@ -784,8 +829,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void Remap(int, const char*&)’ at /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:144:40: /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 @@ -834,28 +877,28 @@ [100%] Linking CXX executable /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr cd /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr -lz -lssw -make[3]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» [100%] Built target ngmlr -make[2]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[2]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 -make[1]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/ngmlr/ -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[1]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» +make[2]: Nessuna operazione da eseguire per «preinstall». +make[2]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/debian/ngmlr/usr/bin/ngmlr -make[1]: Leaving directory '/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf» dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake @@ -876,8 +919,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb'. -dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb'. +dpkg-deb: generazione del pacchetto "ngmlr" in "../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb". +dpkg-deb: generazione del pacchetto "ngmlr-dbgsym" in "../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb". dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -885,12 +928,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19608/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5119 and its subdirectories -I: Current time: Tue Jun 6 17:45:15 -12 2023 -I: pbuilder-time-stamp: 1686116715 +I: removing directory /srv/workspace/pbuilder/19608 and its subdirectories +I: Current time: Wed Jun 7 19:50:45 +14 2023 +I: pbuilder-time-stamp: 1686117045