Diff of the two buildlogs: -- --- b1/build.log 2023-05-07 09:52:35.563304587 +0000 +++ b2/build.log 2023-05-07 10:06:38.546323690 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 6 21:28:00 -12 2023 -I: pbuilder-time-stamp: 1683451680 +I: Current time: Sun May 7 23:52:49 +14 2023 +I: pbuilder-time-stamp: 1683453169 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./minc-tools_2.3.00+dfsg.orig.tar.gz] I: copying [./minc-tools_2.3.00+dfsg-10.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Sep 20 18:41:34 2022 -12 +gpgv: Signature made Wed Sep 21 20:41:34 2022 +14 gpgv: using RSA key CBCF64F1F6B7ADC94D8F2A24C9E55E2FADC8F4B9 gpgv: issuer "smr@debian.org" gpgv: Can't check signature: No public key @@ -33,135 +33,167 @@ dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23373/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/D01_modify_environment starting +debug: Running on ff64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 7 23:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='ecc1a85aa4b54d4fbe72e75231bd0c54' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23373' - PS1='# ' - PS2='> ' + INVOCATION_ID=693b44895cf146e3a059149d49f72834 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2813 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ta1MxdAl/pbuilderrc_roub --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ta1MxdAl/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-10.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ta1MxdAl/pbuilderrc_40nU --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ta1MxdAl/b2 --logfile b2/build.log --extrapackages usrmerge minc-tools_2.3.00+dfsg-10.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32a 5.10.0-22-armmp-lpae #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/23373/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 7 23:53 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -346,7 +378,7 @@ Get: 127 http://deb.debian.org/debian bookworm/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf texlive-base all 2022.20230122-3 [21.9 MB] Get: 129 http://deb.debian.org/debian bookworm/main armhf texlive-latex-base all 2022.20230122-3 [1182 kB] -Fetched 95.1 MB in 8s (11.8 MB/s) +Fetched 95.1 MB in 19s (4884 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -897,8 +929,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-10_source.changes dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -1027,7 +1070,7 @@ -- Build files have been written to: /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1035,334 +1078,287 @@ make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend +make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend +make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend +make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= [ 1%] [FLEX][lex] Building scanner with flex 2.6.4 -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 2%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 2%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 3%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o +[ 4%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -MF CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o.d -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c -[ 3%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -MF CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o.d -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c +[ 5%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o +[ 6%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -MF CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o.d -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c -[ 4%] [BISON][gram] Building parser with bison 3.8.2 +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -MF CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o.d -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c +[ 7%] [BISON][gram] Building parser with bison 3.8.2 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y +[ 7%] [BISON][ncgentab] Building parser with bison 3.8.2 +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples -[ 5%] Linking C executable invert_raw_image -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 6%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -MF CMakeFiles/minccalc.dir/minccalc/minccalc.c.o.d -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 6%] Built target invert_raw_image -make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 7%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l -[ 8%] Linking C executable mincaverage -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf -[ 8%] [BISON][ncgentab] Building parser with bison 3.8.2 -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples -[ 8%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -MF CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c +[ 8%] Linking C executable mincconvert +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1 +[ 9%] Linking C executable invert_raw_image +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 9%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o +[ 10%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/main.c.o -MF CMakeFiles/mincgen.dir/mincgen/main.c.o.d -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 10%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgentab.c.o -MF CMakeFiles/mincgen.dir/ncgentab.c.o.d -o CMakeFiles/mincgen.dir/ncgentab.c.o -c 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'/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 11%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -MF CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o.d -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c -[ 12%] 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-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -MF CMakeFiles/minccalc.dir/minccalc/node.c.o.d -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c -[ 14%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. 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/build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c +[ 12%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgentab.c.o -MF CMakeFiles/mincgen.dir/ncgentab.c.o.d -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/ncgentab.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 15%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o -MF CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c -[ 15%] Built target mincconcat -make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 16%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -MF CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o.d -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c -[ 17%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 19%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 -[ 24%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/gram.c.o -MF CMakeFiles/minccalc.dir/gram.c.o.d -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/gram.c -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 24%] Built target minccopy +[ 12%] Built target invert_raw_image make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs 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-I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -MF CMakeFiles/minccopy.dir/minccopy/minccopy.c.o.d -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 +[ 14%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -MF CMakeFiles/mincdump.dir/mincdump/mincdump.c.o.d -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c -[ 24%] Linking C executable minccalc -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong 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sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~ -In function 'cstring', - inlined from 'gen_c' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: -/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes - 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~~~ -In file included from /usr/include/stdio.h:906, - from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: -In function 'sprintf', - inlined from 'cstring' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:9, - inlined from 'gen_c' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: -/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -[ 25%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o -MF CMakeFiles/mincdump.dir/mincdump/vardata.c.o.d -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf +[ 15%] Linking C executable minccopy +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 25%] Built target minccalc +[ 15%] Built target mincaverage make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= +[ 15%] Linking C executable mincconcat +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 25%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 15%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 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progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -MF CMakeFiles/mincgen.dir/mincgen/getfill.c.o.d -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 28%] Built target mincexample1 +[ 15%] Built target minccopy make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= -[ 28%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/init.c.o -MF CMakeFiles/mincgen.dir/mincgen/init.c.o.d -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c -[ 29%] Linking C executable mincdump -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 30%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o +[ 16%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -MF CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o.d -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c -[ 31%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -MF CMakeFiles/mincgen.dir/mincgen/load.c.o.d -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c +[ 17%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o -MF CMakeFiles/mincdump.dir/mincdump/vardata.c.o.d -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 31%] Built target mincdump +[ 17%] Built target mincconcat make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build -[ 32%] Linking C executable mincexample2 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 -[ 32%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 17%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -MF CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o.d -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c -[ 33%] Linking C executable mincexpand +[ 18%] Linking C executable mincexample1 +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 18%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -MF CMakeFiles/mincgen.dir/ncgenyy.c.o.d -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/ncgenyy.c +[ 19%] Linking C executable mincexpand cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 34%] Linking C executable mincgen -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 20%] Linking C executable mincexample2 +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 34%] Built target mincexample2 +[ 20%] Built target mincexample1 make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 35%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o +[ 21%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -MF CMakeFiles/mincextract.dir/mincextract/mincextract.c.o.d -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 35%] Built target mincexpand +[ 21%] Built target mincexpand make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 36%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -MF CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o.d -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 36%] Built target mincgen +[ 22%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -MF CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o.d -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c +[ 22%] Built target mincexample2 make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= -[ 37%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -MF CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c +[ 23%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -MF CMakeFiles/mincdump.dir/mincdump/dumplib.c.o.d -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 37%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o +[ 23%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -MF CMakeFiles/minclookup.dir/minclookup/minclookup.c.o.d -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c -[ 38%] Linking C executable mincextract +[ 24%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o -MF CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c +[ 25%] Linking C executable mincdump +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 +[ 26%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -MF CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c +[ 27%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -MF CMakeFiles/minccalc.dir/minccalc/node.c.o.d -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c +[ 28%] Linking C executable mincextract cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 29%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o -MF CMakeFiles/minccalc.dir/minccalc/optim.c.o.d -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c +[ 30%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o -MF CMakeFiles/minccalc.dir/minccalc/scalar.c.o.d -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c +[ 31%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o -MF CMakeFiles/mincgen.dir/mincgen/escapes.c.o.d -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 38%] Built target mincextract +[ 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-DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o -MF CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 40%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o +[ 32%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -MF CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o.d -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c -[ 41%] Linking C executable minclookup -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf -[ 42%] Linking C executable mincmakescalar -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf -[ 42%] Built target mincinfo +[ 33%] Linking C executable minclookup +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 +[ 33%] Built target mincextract make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 42%] Built target minclookup +[ 33%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -MF CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o.d -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c +[ 34%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -MF CMakeFiles/mincgen.dir/mincgen/genlib.c.o.d -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c +[ 35%] Linking C executable mincinfo +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 36%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o -MF CMakeFiles/minccalc.dir/minccalc/vector.c.o.d -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c +[ 37%] Linking C executable mincmakevector +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 38%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/lex.c.o -MF CMakeFiles/minccalc.dir/lex.c.o.d -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/lex.c +[ 38%] Built target minclookup make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= -[ 42%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -MF CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o.d -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 43%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o +[ 39%] Linking C executable mincmakescalar +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 +[ 40%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -MF CMakeFiles/mincmath.dir/mincmath/mincmath.c.o.d -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 44%] Linking C executable mincmakevector -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 45%] Linking C executable mincmath -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf -[ 45%] Built target mincmakescalar +[ 40%] Built target mincinfo make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 46%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o +[ 41%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -MF CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o.d -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 46%] Built target mincmakevector +[ 41%] Built target mincmakevector make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 47%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o +[ 42%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -MF CMakeFiles/mincresample.dir/mincresample/mincresample.c.o.d -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c -[ 47%] Built target mincmath +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 42%] Built target mincmakescalar make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 48%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o +[ 43%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c -[ 48%] Linking C executable minc_modify_header +[ 43%] Linking C executable minc_modify_header cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 44%] Linking C executable mincmath +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf +[ 45%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/gram.c.o -MF CMakeFiles/minccalc.dir/gram.c.o.d -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/gram.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 48%] Built target minc_modify_header -make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 49%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -MF CMakeFiles/mincstats.dir/mincstats/mincstats.c.o.d -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': +[ 45%] Built target minc_modify_header /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~ @@ -1380,250 +1376,268 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 49%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -MF CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o.d -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c -[ 49%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c -[ 50%] Linking C executable mincstats -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf -[ 51%] Linking C executable mincreshape -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 51%] Built target mincstats +make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 46%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -MF CMakeFiles/mincstats.dir/mincstats/mincstats.c.o.d -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:28: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~ +In function 'cstring', + inlined from 'gen_c' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~~~ +In file included from /usr/include/stdio.h:906, + from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: +In function 'sprintf', + inlined from 'cstring' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:9, + inlined from 'gen_c' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: +/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 46%] Built target mincmath make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs 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-ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -MF CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o.d -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c +[ 48%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -MF CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c +[ 48%] Linking C executable minctoraw +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 48%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -MF CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o.d -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c +[ 49%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -MF CMakeFiles/mincgen.dir/mincgen/getfill.c.o.d -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c +[ 49%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/init.c.o -MF CMakeFiles/mincgen.dir/mincgen/init.c.o.d -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c +[ 49%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c +[ 49%] Linking C executable minccalc +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 52%] Built target mincreshape +[ 49%] Built target minctoraw make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 53%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o +[ 50%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -MF CMakeFiles/mincgen.dir/mincgen/load.c.o.d -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c +[ 51%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -MF CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o.d -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c -[ 54%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -MF CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c -[ 55%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c -[ 56%] Linking C executable mincwindow +[ 52%] Linking C executable mincwindow cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 56%] Linking C executable minctoraw -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 57%] Linking C executable mincresample -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 57%] Built target mincwindow +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 52%] Built target minccalc make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 57%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o +[ 52%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c -[ 57%] Built target minctoraw +[ 53%] Linking C executable mincgen +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 +[ 54%] Linking C executable mincreshape +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 54%] Built target mincwindow make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 58%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o +[ 55%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -MF CMakeFiles/mincsample.dir/mincsample/mincsample.c.o.d -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c -[ 58%] Built target mincresample +[ 56%] Linking C executable mincstats +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 56%] Built target mincgen make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 59%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -MF CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o.d -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c -[ 60%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c -[ 61%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -MF CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o.d -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c -[ 61%] Linking C executable mincsample -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 -[ 62%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 63%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 63%] Linking C executable rawtominc -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 63%] Built target mincsample +[ 56%] Built target mincreshape make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 64%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o +[ 57%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -MF CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o.d -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c +[ 58%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -MF CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o.d -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c -[ 65%] Linking C executable mincmorph -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 65%] Built target rawtominc +[ 59%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 59%] Built target mincstats make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 66%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o +[ 60%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -MF CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o.d -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c -[ 67%] Linking C executable voxeltoworld +[ 61%] Linking C executable voxeltoworld cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 67%] Linking C executable worldtovoxel +[ 62%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -MF CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o.d -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c +[ 62%] Linking C executable worldtovoxel cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 62%] Linking C executable mincsample +[ 63%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 67%] Built target mincmorph +[ 63%] Built target voxeltoworld make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 64%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o -MF CMakeFiles/transformtags.dir/xfm/transformtags.c.o.d -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 68%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o -[ 68%] Built target voxeltoworld +[ 65%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c +[ 65%] Built target mincsample make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o -MF CMakeFiles/transformtags.dir/xfm/transformtags.c.o.d -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 69%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -MF CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o.d -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c -[ 70%] Linking C executable transformtags -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 70%] Built target worldtovoxel +[ 66%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -MF CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o.d -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c +[ 66%] Built target worldtovoxel make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 71%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o +[ 67%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -MF CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o.d -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c -[ 72%] Linking C executable xfmconcat +[ 68%] Linking C executable transformtags +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 69%] Linking C executable mincresample +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 70%] Linking C executable xfmconcat cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 73%] Linking C executable xfminvert +[ 71%] Linking C executable xfminvert cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 73%] Built target transformtags +[ 71%] Built target transformtags make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 74%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -MF CMakeFiles/mincblob.dir/mincblob/mincblob.c.o.d -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 74%] Built target xfmconcat +[ 71%] Built target mincresample +[ 72%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs 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CMakeFiles/mincblob.dir/mincblob/mincblob.c.o.d -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 75%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o +[ 74%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -MF CMakeFiles/minccmp.dir/minccmp/minccmp.c.o.d -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 75%] Built target xfminvert +[ 74%] Built target xfmconcat make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 75%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o +[ 74%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c -[ 75%] Linking C executable mincblob -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 74%] Linking C executable rawtominc +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 75%] Built target mincblob +[ 74%] Built target xfminvert make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= -[ 76%] Linking C executable minccmp -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 77%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o +[ 75%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c -[ 78%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c +[ 76%] Linking C executable mincmorph +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 78%] Built target minccmp +[ 76%] Built target rawtominc make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 79%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o +[ 77%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c -[ 80%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c -[ 81%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c -[ 82%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c -[ 83%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c -[ 84%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/element.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c -[ 84%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c -[ 84%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c -[ 85%] Linking C executable ecattominc -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 86%] Linking C executable minctoecat -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 86%] Built target ecattominc +[ 77%] Linking C executable mincblob +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 +[ 77%] Built target mincmorph make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 78%] Linking C executable minccmp +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 87%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 79%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -MF CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o.d -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:736:31: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 736 | printf("# of voxels %ld\n", nii_ptr->nvox); @@ -1640,39 +1654,28 @@ /usr/include/restructure.h:13:37: note: expected 'const size_t *' {aka 'const unsigned int *'} but argument is of type 'long unsigned int *' 13 | const size_t *lengths_perm, | ~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 87%] Built target minctoecat +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 80%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c +[ 80%] Built target mincblob make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 88%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -MF CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o.d -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 88%] Linking C executable mnc2nii -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 -[ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 88%] Built target mnc2nii +[ 80%] Built target minccmp make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= -[ 89%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c +[ 81%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -MF CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o.d -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 90%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o +[ 82%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -MF CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o.d -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c -[ 91%] Linking C executable nii2mnc -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ @@ -1692,19 +1695,59 @@ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR' 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ +/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': +/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 83%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c +[ 83%] Linking C executable mnc2nii +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio +[ 84%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c +[ 85%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 86%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c +[ 86%] Built target mnc2nii +[ 87%] Linking C executable nii2mnc +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio +[ 87%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c +[ 87%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c +[ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/element.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c +[ 88%] Linking C executable upet2mnc +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 88%] Built target nii2mnc +[ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c +[ 89%] Linking C executable minctoecat +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 90%] Linking C executable ecattominc +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +[ 90%] Built target upet2mnc +[ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c [ 92%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/group.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c -[ 92%] Built target nii2mnc +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' [ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o +[ 93%] Built target ecattominc cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/message.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c -[ 93%] Linking C executable upet2mnc -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -L/usr/lib/arm-linux-gnueabihf/lib -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 93%] Built target minctoecat [ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 93%] Built target upet2mnc /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c: In function 'check_table_integrity': /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:72: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] 179 | (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); @@ -1732,12 +1775,18 @@ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' -[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c -[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o +[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c +[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c +[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c +[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c +[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c +[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ @@ -1747,6 +1796,10 @@ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro 'VERSION_STRING' 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ +/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': +/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 1084 | fread(data, 1, length, fp); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_cdexport_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); @@ -1759,16 +1812,6 @@ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c -[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c -/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': -/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 1084 | fread(data, 1, length, fp); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c [100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/arm-linux-gnueabihf/include -I/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c [100%] Linking C executable dcm2mnc @@ -1783,7 +1826,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minc-tools/ - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j6 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1954,12 +1997,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2813/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23373 and its subdirectories -I: Current time: Sat May 6 21:52:31 -12 2023 -I: pbuilder-time-stamp: 1683453151 +I: removing directory /srv/workspace/pbuilder/2813 and its subdirectories +I: Current time: Mon May 8 00:06:27 +14 2023 +I: pbuilder-time-stamp: 1683453987