Diff of the two buildlogs: -- --- b1/build.log 2024-02-08 12:50:23.832786925 +0000 +++ b2/build.log 2024-02-08 16:24:04.436725224 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Feb 7 23:35:00 -12 2024 -I: pbuilder-time-stamp: 1707392100 +I: Current time: Fri Feb 9 02:52:37 +14 2024 +I: pbuilder-time-stamp: 1707396757 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./mdanalysis_2.4.2+dfsg1.orig.tar.xz] I: copying [./mdanalysis_2.4.2+dfsg1-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Jan 9 08:04:44 2023 -12 +gpgv: Signature made Tue Jan 10 10:04:44 2023 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.4.2+dfsg1-1.dsc: no acceptable signature found @@ -31,135 +31,167 @@ dpkg-source: info: applying docs_privacy.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2568/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 9 02:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='b021cd2402b444c5838328c52ecea098' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2568' - PS1='# ' - PS2='> ' + INVOCATION_ID=2d368baa212e4c38b78afa5ac8bb9045 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=9298 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XlVKyRkE/pbuilderrc_Qzsh --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XlVKyRkE/b1 --logfile b1/build.log mdanalysis_2.4.2+dfsg1-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XlVKyRkE/pbuilderrc_bmp3 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XlVKyRkE/b2 --logfile b2/build.log mdanalysis_2.4.2+dfsg1-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32a 6.1.0-17-armmp-lpae #1 SMP Debian 6.1.69-1 (2023-12-30) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 4964 - -rwxr-xr-x 1 root root 838488 Apr 23 2023 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 2023 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 2023 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 2023 more - -rwsr-xr-x 1 root root 38496 Mar 22 2023 mount - -rwxr-xr-x 1 root root 9824 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 14152 Jul 28 2023 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 2023 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 2023 tar - -rwxr-xr-x 1 root root 9800 Jul 28 2023 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 2023 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2568/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 2023 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 2023 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 2023 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 2023 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 2023 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 2023 more + -rwsr-xr-x 1 root root 38496 Mar 23 2023 mount + -rwxr-xr-x 1 root root 9824 Mar 23 2023 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 14152 Jul 29 2023 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Feb 9 02:53 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 2023 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 2023 tar + -rwxr-xr-x 1 root root 9800 Jul 29 2023 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 2023 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -499,7 +531,7 @@ Get: 236 http://deb.debian.org/debian bookworm/main armhf python3-sphinx-sitemap all 2.2.0-2 [7252 B] Get: 237 http://deb.debian.org/debian bookworm/main armhf python3-sphinxcontrib.bibtex all 2.5.0-1 [30.8 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf python3-tqdm all 4.64.1-1 [97.7 kB] -Fetched 149 MB in 4s (35.7 MB/s) +Fetched 149 MB in 7s (20.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19288 files and directories currently installed.) @@ -1488,7 +1520,11 @@ fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/mdanalysis-2.4.2+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mdanalysis_2.4.2+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mdanalysis-2.4.2+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mdanalysis_2.4.2+dfsg1-1_source.changes dpkg-buildpackage: info: source package mdanalysis dpkg-buildpackage: info: source version 2.4.2+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -1566,200 +1602,200 @@ creating build creating build/lib.linux-armhf-cpython-311 creating build/lib.linux-armhf-cpython-311/MDAnalysis -copying MDAnalysis/units.py -> build/lib.linux-armhf-cpython-311/MDAnalysis -copying MDAnalysis/exceptions.py -> build/lib.linux-armhf-cpython-311/MDAnalysis -copying MDAnalysis/authors.py -> build/lib.linux-armhf-cpython-311/MDAnalysis copying MDAnalysis/due.py -> build/lib.linux-armhf-cpython-311/MDAnalysis copying MDAnalysis/version.py -> build/lib.linux-armhf-cpython-311/MDAnalysis copying MDAnalysis/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis -creating build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/distances.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/log.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/correlations.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/util.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -copying MDAnalysis/lib/transformations.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib -creating build/lib.linux-armhf-cpython-311/MDAnalysis/tests -copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/tests -copying MDAnalysis/tests/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/tests +copying MDAnalysis/authors.py -> build/lib.linux-armhf-cpython-311/MDAnalysis +copying MDAnalysis/exceptions.py -> build/lib.linux-armhf-cpython-311/MDAnalysis +copying MDAnalysis/units.py -> build/lib.linux-armhf-cpython-311/MDAnalysis creating build/lib.linux-armhf-cpython-311/MDAnalysis/core -copying MDAnalysis/core/accessors.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core copying MDAnalysis/core/groups.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core -copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core -copying MDAnalysis/core/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core -copying MDAnalysis/core/universe.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core copying MDAnalysis/core/topology.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core +copying MDAnalysis/core/universe.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core +copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core +copying MDAnalysis/core/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core +copying MDAnalysis/core/accessors.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core copying MDAnalysis/core/selection.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/core -creating build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/guessers.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/tables.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/core.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology -copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +creating build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/util.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/transformations.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/distances.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/correlations.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/log.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib +creating build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary creating build/lib.linux-armhf-cpython-311/MDAnalysis/converters -copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters -copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters -copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters -copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters -copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters +copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters copying MDAnalysis/converters/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters +copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters +copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters +copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters +copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/converters creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/msd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/density.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/psa.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis copying MDAnalysis/analysis/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/distances.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/pca.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis copying MDAnalysis/analysis/align.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/distances.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis copying MDAnalysis/analysis/rms.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/pca.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/density.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/msd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis copying MDAnalysis/analysis/bat.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -copying MDAnalysis/analysis/psa.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis -creating build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary +copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis +creating build/lib.linux-armhf-cpython-311/MDAnalysis/selections +copying MDAnalysis/selections/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections +copying MDAnalysis/selections/vmd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections +copying MDAnalysis/selections/charmm.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections +copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections +copying MDAnalysis/selections/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections +copying MDAnalysis/selections/jmol.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections +copying MDAnalysis/selections/pymol.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections +creating build/lib.linux-armhf-cpython-311/MDAnalysis/visualization +copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/visualization +copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/visualization +copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/visualization +creating build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/core.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/tables.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/guessers.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology +creating build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/fit.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/translate.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations +copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations creating build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/null.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/core.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/core.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates -creating build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/translate.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/fit.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/transformations -creating build/lib.linux-armhf-cpython-311/MDAnalysis/selections -copying MDAnalysis/selections/charmm.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections -copying MDAnalysis/selections/base.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections -copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections -copying MDAnalysis/selections/jmol.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections -copying MDAnalysis/selections/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections -copying MDAnalysis/selections/vmd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections -copying MDAnalysis/selections/pymol.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/selections -creating build/lib.linux-armhf-cpython-311/MDAnalysis/visualization -copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/visualization -copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/visualization -copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/visualization +copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/null.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates +creating build/lib.linux-armhf-cpython-311/MDAnalysis/tests +copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/tests +copying MDAnalysis/tests/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/tests creating build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats -creating build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr -copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr -copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr -copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr -copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr -creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds -copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds -copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds -copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds -copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds -creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data -copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data -copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/utils.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2 -copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2 -copying MDAnalysis/analysis/hole2/templates.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2 +copying MDAnalysis/analysis/hole2/templates.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2 +copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2 +creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy +copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy +copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy +creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data +copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data +copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data +creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds +copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds +copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds +copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds +copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hbonds -creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy -copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy -copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction creating build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering +creating build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr +copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr +copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr +copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr +copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr running egg_info creating MDAnalysis.egg-info writing MDAnalysis.egg-info/PKG-INFO @@ -2505,7 +2541,7 @@ building 'MDAnalysis.analysis.encore.cutils' extension creating build/temp.linux-armhf-cpython-311/MDAnalysis/analysis creating build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/cutils.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/cutils.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O1 cc1: warning: '-fassociative-math' disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, @@ -2518,7 +2554,7 @@ building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension creating build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering creating build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/src -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O1 cc1: warning: '-fassociative-math' disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, @@ -2527,15 +2563,15 @@ /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O1 cc1: warning: '-fassociative-math' disabled; other options take precedence arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension creating build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction creating build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O1 cc1: warning: '-fassociative-math' disabled; other options take precedence -arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 +arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.4.2+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O1 cc1: warning: '-fassociative-math' disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, @@ -2707,284 +2743,284 @@ creating build/bdist.linux-armhf creating build/bdist.linux-armhf/wheel creating build/bdist.linux-armhf/wheel/MDAnalysis +creating build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/groups.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/topology.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/universe.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/accessors.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/selection.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core +copying build/lib.linux-armhf-cpython-311/MDAnalysis/due.py -> build/bdist.linux-armhf/wheel/MDAnalysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/version.py -> build/bdist.linux-armhf/wheel/MDAnalysis creating build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/distances.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/log.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/libmdanalysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/libmdanalysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/util.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/transformations.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/correlations.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/src -creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/util.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/libmdanalysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/libmdanalysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/distances.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/transformations.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/formats +creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/src +creating build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib/src/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armhf/wheel/MDAnalysis/lib -creating build/bdist.linux-armhf/wheel/MDAnalysis/tests -copying build/lib.linux-armhf-cpython-311/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armhf/wheel/MDAnalysis/tests -copying build/lib.linux-armhf-cpython-311/MDAnalysis/tests/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/tests -copying build/lib.linux-armhf-cpython-311/MDAnalysis/units.py -> build/bdist.linux-armhf/wheel/MDAnalysis -creating build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/accessors.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/groups.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/universe.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/topology.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -copying build/lib.linux-armhf-cpython-311/MDAnalysis/core/selection.py -> build/bdist.linux-armhf/wheel/MDAnalysis/core -creating build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/guessers.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tables.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -creating build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/core.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology -copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/correlations.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/log.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +copying build/lib.linux-armhf-cpython-311/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armhf/wheel/MDAnalysis/lib +creating build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary +copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary +copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary +copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary +copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary +copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary creating build/bdist.linux-armhf/wheel/MDAnalysis/converters -copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters -copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters -copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters -copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters -copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters +copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters +copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters +copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters +copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters +copying build/lib.linux-armhf-cpython-311/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/converters creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/msd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 +creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/legacy +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/legacy +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/legacy +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/density.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/psa.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/data +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/data copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/data -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/data copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/data -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/data -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/distances.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/data +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/pca.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/align.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/distances.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/rms.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/pca.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/density.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hole2 -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction -creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction +creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering +creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering/include +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering/src copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering/src copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering -creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering/include -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/encore -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/bat.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hbonds copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hbonds copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/hbonds -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -creating build/bdist.linux-armhf/wheel/MDAnalysis/analysis/legacy -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/legacy -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis/legacy -copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/psa.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis -creating build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary -copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary -copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary -copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary -copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary -copying build/lib.linux-armhf-cpython-311/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/auxiliary +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/msd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/bat.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armhf/wheel/MDAnalysis/analysis +creating build/bdist.linux-armhf/wheel/MDAnalysis/selections +copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections +copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/vmd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections +copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/charmm.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections +copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections +copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections +copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/jmol.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections +copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/pymol.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections +creating build/bdist.linux-armhf/wheel/MDAnalysis/visualization +copying build/lib.linux-armhf-cpython-311/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/visualization +copying build/lib.linux-armhf-cpython-311/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armhf/wheel/MDAnalysis/visualization +copying build/lib.linux-armhf-cpython-311/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armhf/wheel/MDAnalysis/visualization +copying build/lib.linux-armhf-cpython-311/MDAnalysis/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis +creating build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/core.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tables.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/guessers.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +creating build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology/tpr +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armhf/wheel/MDAnalysis/topology +copying build/lib.linux-armhf-cpython-311/MDAnalysis/authors.py -> build/bdist.linux-armhf/wheel/MDAnalysis +copying build/lib.linux-armhf-cpython-311/MDAnalysis/exceptions.py -> build/bdist.linux-armhf/wheel/MDAnalysis +creating build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/fit.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/translate.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations +copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations creating build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/null.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/core.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/core.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates -creating build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/translate.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/fit.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armhf/wheel/MDAnalysis/transformations -copying build/lib.linux-armhf-cpython-311/MDAnalysis/exceptions.py -> build/bdist.linux-armhf/wheel/MDAnalysis -creating build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/charmm.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/base.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/jmol.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/vmd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/selections/pymol.py -> build/bdist.linux-armhf/wheel/MDAnalysis/selections -copying build/lib.linux-armhf-cpython-311/MDAnalysis/authors.py -> build/bdist.linux-armhf/wheel/MDAnalysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/due.py -> build/bdist.linux-armhf/wheel/MDAnalysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/version.py -> build/bdist.linux-armhf/wheel/MDAnalysis -copying build/lib.linux-armhf-cpython-311/MDAnalysis/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis -creating build/bdist.linux-armhf/wheel/MDAnalysis/visualization -copying build/lib.linux-armhf-cpython-311/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armhf/wheel/MDAnalysis/visualization -copying build/lib.linux-armhf-cpython-311/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armhf/wheel/MDAnalysis/visualization -copying build/lib.linux-armhf-cpython-311/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/visualization +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/null.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +copying build/lib.linux-armhf-cpython-311/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armhf/wheel/MDAnalysis/coordinates +creating build/bdist.linux-armhf/wheel/MDAnalysis/tests +copying build/lib.linux-armhf-cpython-311/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armhf/wheel/MDAnalysis/tests +copying build/lib.linux-armhf-cpython-311/MDAnalysis/tests/__init__.py -> build/bdist.linux-armhf/wheel/MDAnalysis/tests +copying build/lib.linux-armhf-cpython-311/MDAnalysis/units.py -> build/bdist.linux-armhf/wheel/MDAnalysis running install_egg_info Copying MDAnalysis.egg-info to build/bdist.linux-armhf/wheel/MDAnalysis-2.4.2.egg-info running install_scripts creating build/bdist.linux-armhf/wheel/MDAnalysis-2.4.2.dist-info/WHEEL -creating '/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/.tmp-75tuk7_a/MDAnalysis-2.4.2-cp311-cp311-linux_armhf.whl' and adding 'build/bdist.linux-armhf/wheel' to it +creating '/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/.tmp-djrdckh3/MDAnalysis-2.4.2-cp311-cp311-linux_armhf.whl' and adding 'build/bdist.linux-armhf/wheel' to it adding 'MDAnalysis/__init__.py' adding 'MDAnalysis/authors.py' adding 'MDAnalysis/due.py' @@ -3249,38 +3285,38 @@ parsing bibtex file /build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/doc/sphinx/source/references.bib... parsed 64 entries locale_dir /build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exists loading intersphinx inventory from https://docs.h5py.org/en/stable/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from https://docs.python.org/3/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv... loading intersphinx inventory from https://gsd.readthedocs.io/en/stable/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... loading intersphinx inventory from https://mdanalysis.org/GridDataFormats/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from https://mdanalysis.org/pmda/objects.inv... loading intersphinx inventory from https://networkx.org/documentation/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from https://parmed.github.io/ParmEd/html/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory from https://rdkit.org/docs/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to : HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to : HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) locale_dir /build/reproducible-path/mdanalysis-2.4.2+dfsg1/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exists building [mo]: targets for 0 po files that are out of date building [html]: targets for 164 source files that are out of date @@ -3330,7 +3366,8 @@ Didn't find DistanceMatrix.atoms in MDAnalysis.analysis.diffusionmap Didn't find DistanceMatrix.results.dist_matrix in MDAnalysis.analysis.diffusionmap reading sources... [ 5%] documentation_pages/analysis/dihedrals -Matplotlib created a temporary config/cache directory at /tmp/matplotlib-l8d3hw0r because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. +Matplotlib created a temporary config/cache directory at /tmp/matplotlib-i2o5vk5i because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. +Matplotlib is building the font cache; this may take a moment. Didn't find Dihedral.results.angles in MDAnalysis.analysis.dihedrals Didn't find Ramachandran.results.angles in MDAnalysis.analysis.dihedrals Didn't find Janin.results.angles in MDAnalysis.analysis.dihedrals @@ -4172,7 +4209,7 @@ ........................................................................ [ 39%] ......................................................... [ 39%] testsuite/MDAnalysisTests/formats/test_libdcd.py ....................... [ 39%] -........................................................................ [ 39%] +.......................X................................................ [ 39%] ...... [ 39%] testsuite/MDAnalysisTests/formats/test_libmdaxdr.py .................... [ 39%] ........................................................................ [ 40%] @@ -4490,7 +4527,7 @@ MDAnalysisTests/analysis/test_bat.py: 9 warnings MDAnalysisTests/coordinates/test_mol2.py: 3 warnings - /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/topology/MOL2Parser.py:234: UserWarning: Unknown elements found for some atoms: {'c3', 'h1', 'hc', 'oh', 'ho'}. These have been given an empty element record. + /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/topology/MOL2Parser.py:234: UserWarning: Unknown elements found for some atoms: {'ho', 'hc', 'c3', 'oh', 'h1'}. These have been given an empty element record. warnings.warn("Unknown elements found for some " MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_neqbox @@ -4888,7 +4925,7 @@ MDAnalysisTests/coordinates/test_dcd.py::test_write_no_natoms MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_time_unit MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_unit - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/DCD.py", line 467, in __del__ @@ -4950,7 +4987,7 @@ warnings.warn( MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_wrong_driver - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1512, in __del__ @@ -5033,7 +5070,7 @@ warnings.warn("Found missing chainIDs." MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_reader_no_h5py - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1510, in __del__ @@ -5054,7 +5091,7 @@ MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_time_unit MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_unit - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1510, in __del__ @@ -5091,7 +5128,7 @@ warnings.warn(wmsg) MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_zero_atoms_VE - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1592, in __del__ @@ -5165,7 +5202,7 @@ warnings.warn( MDAnalysisTests/coordinates/test_tng.py::test_pytng_not_present_raises - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1510, in __del__ @@ -5179,7 +5216,7 @@ warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) MDAnalysisTests/coordinates/test_trj.py::test_trj_no_natoms - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1512, in __del__ @@ -5214,7 +5251,7 @@ warnings.warn("Timestep didn't have velocity information, " MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_long_title - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/base.py", line 1592, in __del__ @@ -5252,7 +5289,7 @@ warnings.warn(wmsg) MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_no_container - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py", line 325, in __del__ @@ -5265,7 +5302,7 @@ warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_no_container - /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: + /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py", line 325, in __del__ @@ -5279,12 +5316,12 @@ MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_nonexistent_offsets_file MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_io_fails - /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:91: UserWarning: Failed to load offsets file /tmp/pytest-of-pbuilder1/pytest-0/xtc0/.adk_oplsaa.xtc_offsets.npz + /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:91: UserWarning: Failed to load offsets file /tmp/pytest-of-pbuilder2/pytest-0/xtc0/.adk_oplsaa.xtc_offsets.npz warnings.warn("Failed to load offsets file {}\n".format(filename)) MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_io_fails - /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:223: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder1/pytest-0/xtc0/.adk_oplsaa.xtc_offsets.npz failed, reading offsets from trajectory instead. + /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:223: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder2/pytest-0/xtc0/.adk_oplsaa.xtc_offsets.npz failed, reading offsets from trajectory instead. Consider setting 'refresh_offsets=True' when loading your Universe. warnings.warn("Reading offsets from {} failed, " @@ -5296,12 +5333,12 @@ MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_nonexistent_offsets_file MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_io_fails - /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:91: UserWarning: Failed to load offsets file /tmp/pytest-of-pbuilder1/pytest-0/xtc1/.adk_oplsaa.trr_offsets.npz + /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:91: UserWarning: Failed to load offsets file /tmp/pytest-of-pbuilder2/pytest-0/xtc1/.adk_oplsaa.trr_offsets.npz warnings.warn("Failed to load offsets file {}\n".format(filename)) MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_io_fails - /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:223: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder1/pytest-0/xtc1/.adk_oplsaa.trr_offsets.npz failed, reading offsets from trajectory instead. + /build/reproducible-path/mdanalysis-2.4.2+dfsg1/.pybuild/cpython3_3.11_mdanalysis/build/MDAnalysis/coordinates/XDR.py:223: UserWarning: Reading offsets from /tmp/pytest-of-pbuilder2/pytest-0/xtc1/.adk_oplsaa.trr_offsets.npz failed, reading offsets from trajectory instead. Consider setting 'refresh_offsets=True' when loading your Universe. warnings.warn("Reading offsets from {} failed, " @@ -5475,19 +5512,19 @@ See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f0] - /usr/lib/python3/dist-packages/_pytest/python.py:195: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder1/pytest-0/test_pickle_with_write_mode_un0/pickle/test.pdb') mode='wb' closefd=True> + /usr/lib/python3/dist-packages/_pytest/python.py:195: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder2/pytest-0/test_pickle_with_write_mode_un0/pickle/test.pdb') mode='wb' closefd=True> result = testfunction(**testargs) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f1] - /usr/lib/python3/dist-packages/_pytest/python.py:195: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder1/pytest-0/test_pickle_with_write_mode_un1/pickle/test.pdb') mode='xb' closefd=True> + /usr/lib/python3/dist-packages/_pytest/python.py:195: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder2/pytest-0/test_pickle_with_write_mode_un1/pickle/test.pdb') mode='xb' closefd=True> result = testfunction(**testargs) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f2] - /usr/lib/python3/dist-packages/_pytest/python.py:195: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder1/pytest-0/test_pickle_with_write_mode_un2/pickle/test.pdb') mode='ab' closefd=True> + /usr/lib/python3/dist-packages/_pytest/python.py:195: ResourceWarning: unclosed file <_io.FileIO name=local('/tmp/pytest-of-pbuilder2/pytest-0/test_pickle_with_write_mode_un2/pickle/test.pdb') mode='ab' closefd=True> result = testfunction(**testargs) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. @@ -5498,7 +5535,7 @@ return umath.absolute(a) * self.tolerance >= umath.absolute(b) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 18271 passed, 573 skipped, 7 xfailed, 2 xpassed, 32335 warnings in 3198.88s (0:53:18) = += 18270 passed, 573 skipped, 7 xfailed, 3 xpassed, 32335 warnings in 10046.57s (2:47:26) = --- Logging error --- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/duecredit/utils.py", line 190, in wrapped_func @@ -5538,7 +5575,7 @@ Call stack: File "/usr/lib/python3/dist-packages/duecredit/utils.py", line 192, in wrapped_func lgr.warning("DueCredit internal failure while running %s: %r. " -Message: "DueCredit internal failure while running : PermissionError(13, 'Permission denied'). Please report to developers at https://github.com/duecredit/duecredit/issues" +Message: "DueCredit internal failure while running : PermissionError(13, 'Permission denied'). Please report to developers at https://github.com/duecredit/duecredit/issues" Arguments: () DueCredit Report: @@ -5550,10 +5587,10 @@ - HOLE program, HOLE trajectory analysis with orderparameters / MDAnalysis.analysis.hole2 (v 2.4.2) [7, 8, 9] - Hydrogen bond analysis implementation / MDAnalysis.analysis.hydrogenbonds.hbond_analysis (v 2.4.2) [10] - LeafletFinder algorithm / MDAnalysis.analysis.leaflet (v 2.4.2) [2] - - FCA fast correlation algorithm, Mean Squared Displacements with tidynamics / MDAnalysis.analysis.msd (v 2.4.2) [11, 12] + - Mean Squared Displacements with tidynamics, FCA fast correlation algorithm / MDAnalysis.analysis.msd (v 2.4.2) [11, 12] - Cumulative overlap / MDAnalysis.analysis.pca (v 2.4.2) [13] - Path Similarity Analysis algorithm and implementation / MDAnalysis.analysis.psa (v 2.4.2) [14] - - Specifications of the H5MD standard, MDAnalysis trajectory reader/writer of the H5MDformat / MDAnalysis.coordinates.H5MD (v 1.1, 2.4.2) [15, 16] + - MDAnalysis trajectory reader/writer of the H5MDformat, Specifications of the H5MD standard / MDAnalysis.coordinates.H5MD (v 2.4.2, 1.1) [15, 16] - MMTF Reader / MDAnalysis.coordinates.MMTF (v 2.4.2) [17] - The TNG paper / MDAnalysis.coordinates.TNG (v 2.4.2) [18] - QCProt implementation / MDAnalysis.lib.qcprot (v 2.4.2) [19, 20] @@ -5602,9 +5639,9 @@ dpkg-gencontrol: warning: package python-mdanalysis-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild +dpkg-deb: building package 'python-mdanalysis-doc' in '../python-mdanalysis-doc_2.4.2+dfsg1-1_all.deb'. dpkg-deb: building package 'python3-mdanalysis-dbgsym' in '../python3-mdanalysis-dbgsym_2.4.2+dfsg1-1_armhf.deb'. dpkg-deb: building package 'python3-mdanalysis' in '../python3-mdanalysis_2.4.2+dfsg1-1_armhf.deb'. -dpkg-deb: building package 'python-mdanalysis-doc' in '../python-mdanalysis-doc_2.4.2+dfsg1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../mdanalysis_2.4.2+dfsg1-1_armhf.buildinfo dpkg-genchanges --build=binary -O../mdanalysis_2.4.2+dfsg1-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -5613,12 +5650,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/9298/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2568 and its subdirectories -I: Current time: Thu Feb 8 00:50:17 -12 2024 -I: pbuilder-time-stamp: 1707396617 +I: removing directory /srv/workspace/pbuilder/9298 and its subdirectories +I: Current time: Fri Feb 9 06:23:57 +14 2024 +I: pbuilder-time-stamp: 1707409437