Diff of the two buildlogs: -- --- b1/build.log 2023-05-09 22:29:22.138691361 +0000 +++ b2/build.log 2023-05-09 22:47:36.882788828 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 9 09:13:24 -12 2023 -I: pbuilder-time-stamp: 1683666804 +I: Current time: Wed May 10 12:30:16 +14 2023 +I: pbuilder-time-stamp: 1683671416 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./kmc_3.2.1+dfsg.orig.tar.xz] I: copying [./kmc_3.2.1+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Jan 16 02:40:06 2022 -12 +gpgv: Signature made Mon Jan 17 04:40:06 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -34,135 +34,167 @@ dpkg-source: info: applying support-mixed-march.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/12339/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 10 12:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='50a9aadf19364a438639a32995b94960' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='12339' - PS1='# ' - PS2='> ' + INVOCATION_ID=09bcaf94523a48aeb9fab35c5d39c40a + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20472 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/pbuilderrc_Q2bn --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/b1 --logfile b1/build.log kmc_3.2.1+dfsg-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/pbuilderrc_eV4O --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/b2 --logfile b2/build.log --extrapackages usrmerge kmc_3.2.1+dfsg-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4pro0 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/12339/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 10 12:31 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -267,7 +299,7 @@ Get: 53 http://deb.debian.org/debian bookworm/main armhf libbz2-dev armhf 1.0.8-5+b1 [28.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] -Fetched 27.9 MB in 5s (5543 kB/s) +Fetched 27.9 MB in 2s (11.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -508,8 +540,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/kmc-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.2.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/kmc-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmc_3.2.1+dfsg-1_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.2.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -523,7 +566,7 @@ rm -rf /build/kmc-3.2.1+dfsg/debian/man_src/*.html /build/kmc-3.2.1+dfsg/debian/man_src/*.? rm -rf /build/kmc-3.2.1+dfsg/debian/man dh_auto_clean -- - make -j3 clean + make -j4 clean make[2]: Entering directory '/build/kmc-3.2.1+dfsg' rm -f kmc_core/*.o rm -f kmc_api/*.o @@ -557,7 +600,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/kmc-3.2.1+dfsg' dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/kmc-3.2.1+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_CLI/kmc.cpp -o kmc_CLI/kmc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/mem_disk_file.cpp -o kmc_core/mem_disk_file.o @@ -566,6 +609,8 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/cpu_info.cpp -o kmc_core/cpu_info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/bkb_reader.cpp -o kmc_core/bkb_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/fastq_reader.cpp -o kmc_core/fastq_reader.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/timer.cpp -o kmc_core/timer.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/develop.cpp -o kmc_core/develop.o In file included from /usr/include/c++/12/set:60, from kmc_core/queues.h:19, from kmc_core/params.h:16, @@ -597,8 +642,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/timer.cpp -o kmc_core/timer.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/develop.cpp -o kmc_core/develop.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kb_completer.cpp -o kmc_core/kb_completer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kb_storer.cpp -o kmc_core/kb_storer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kmer.cpp -o kmc_core/kmer.o @@ -674,6 +717,7 @@ /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, long long unsigned int> >::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const char (&)[12], long long unsigned int&}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, long long unsigned int> >::iterator' changed in GCC 7.1 In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const char (&)[12], long long unsigned int&}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]', @@ -691,9 +735,9 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)': kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(marker_start, 1, 3, file); @@ -733,7 +777,8 @@ /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o In file included from /usr/include/c++/12/queue:62, from kmc_core/raduls_impl.h:15: /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, vector*, CKmer<1>*, long long unsigned int>, allocator*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<1>*, CKmer<1>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<1>*, long long unsigned int>, tuple*, CKmer<1>*, long long unsigned int>)> >]': @@ -742,26 +787,76 @@ | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, vector*, CKmer<1>*, long long unsigned int>, allocator*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<1>*, CKmer<1>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<1>*, long long unsigned int>, tuple*, CKmer<1>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 +In file included from /usr/include/c++/12/vector:70, + from kmc_tools/operations.h:24, + from kmc_tools/expression_node.h:14, + from kmc_tools/parser.h:14, + from kmc_tools/parameters_parser.h:15, + from kmc_tools/parameters_parser.cpp:11: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator]', + inlined from 'void CParametersParser::read_input_desc()' at kmc_tools/parameters_parser.cpp:251:29: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, vector*, CKmer<2>*, long long unsigned int>, allocator*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<2>*, long long unsigned int>, tuple*, CKmer<2>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, vector*, CKmer<2>*, long long unsigned int>, allocator*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<2>*, long long unsigned int>, tuple*, CKmer<2>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator]', + inlined from 'bool CParametersParser::read_output_for_transform()' at kmc_tools/parameters_parser.cpp:339:43: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, vector*, CKmer<3>*, long long unsigned int>, allocator*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<3>*, long long unsigned int>, tuple*, CKmer<3>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, vector*, CKmer<3>*, long long unsigned int>, allocator*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<3>*, long long unsigned int>, tuple*, CKmer<3>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, vector*, CKmer<4>*, long long unsigned int>, allocator*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<4>*, CKmer<4>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<4>*, long long unsigned int>, tuple*, CKmer<4>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator]', + inlined from 'bool CParametersParser::read_output_desc_for_simple()' at kmc_tools/parameters_parser.cpp:504:40: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, vector*, CKmer<4>*, long long unsigned int>, allocator*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<4>*, CKmer<4>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<4>*, long long unsigned int>, tuple*, CKmer<4>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, vector*, CKmer<5>*, long long unsigned int>, allocator*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<5>*, long long unsigned int>, tuple*, CKmer<5>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, vector*, CKmer<5>*, long long unsigned int>, allocator*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<5>*, long long unsigned int>, tuple*, CKmer<5>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, vector*, CKmer<6>*, long long unsigned int>, allocator*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<6>*, CKmer<6>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<6>*, long long unsigned int>, tuple*, CKmer<6>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, vector*, CKmer<6>*, long long unsigned int>, allocator*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<6>*, CKmer<6>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<6>*, long long unsigned int>, tuple*, CKmer<6>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:754:26: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:768:27: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, vector*, CKmer<7>*, long long unsigned int>, allocator*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<7>*, CKmer<7>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<7>*, long long unsigned int>, tuple*, CKmer<7>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, vector*, CKmer<7>*, long long unsigned int>, allocator*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<7>*, CKmer<7>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<7>*, long long unsigned int>, tuple*, CKmer<7>*, long long unsigned int>)> >]': @@ -770,6 +865,7 @@ /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, vector*, CKmer<8>*, long long unsigned int>, allocator*, CKmer<8>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple*, CKmer<8>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<8>*, CKmer<8>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<8>*, long long unsigned int>, tuple*, CKmer<8>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parser.cpp -o kmc_tools/parser.o In file included from /usr/include/c++/12/algorithm:61, from kmc_core/raduls_impl.h:19: /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, vector*, CKmer<5>*, long long unsigned int>, allocator*, CKmer<5>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<5>*, long long unsigned int>, tuple*, CKmer<5>*, long long unsigned int>)> >]': @@ -841,6 +937,15 @@ kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(raw, 1, 4, file); | ~~~~~^~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from kmc_tools/operations.h:24, + from kmc_tools/expression_node.h:14, + from kmc_tools/parser.h:14, + from kmc_tools/parser.cpp:11: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from kmc_tools/db_reader_factory.h:8, from kmc_tools/expression_node.h:19, from kmc_tools/parser.h:14, @@ -874,6 +979,18 @@ kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from /usr/include/c++/12/queue:61: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'CRangeQueue::CRangeQueue(uint32, uint64)' at kmc_core/first_dispatch.h:58:25: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 7]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); @@ -1070,18 +1187,6 @@ kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from /usr/include/c++/12/queue:61: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'CRangeQueue::CRangeQueue(uint32, uint64)' at kmc_core/first_dispatch.h:58:25: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple*, CKmer<8>*, long long unsigned int>}; _Tp = std::tuple*, CKmer<8>*, long long unsigned int>; _Alloc = std::allocator*, CKmer<8>*, long long unsigned int> >]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > >::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: @@ -1132,6 +1237,12 @@ /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator]', + inlined from 'void CParser::parseInputLine(const std::string&)' at kmc_tools/parser.cpp:147:31: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple*, CKmer<8>*, long long unsigned int>}; _Tp = std::tuple*, CKmer<8>*, long long unsigned int>; _Alloc = std::allocator*, CKmer<8>*, long long unsigned int> >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple*, CKmer<8>*, long long unsigned int>; _Alloc = std::allocator*, CKmer<8>*, long long unsigned int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'void RadulsSort::RadixSortMSD_impl(KMER_T*, KMER_T*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64) [with KMER_T = CKmer<8>; COUNTER_TYPE = int]' at kmc_core/raduls_impl.h:685:26: @@ -1266,6 +1377,7 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, vector*, CKmer<5>*, long long unsigned int>, allocator*, CKmer<5>*, long long unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<5>*, long long unsigned int>, tuple*, CKmer<5>*, long long unsigned int>)> >]': /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 1908 | __introsort_loop(_RandomAccessIterator __first, @@ -1566,6 +1678,7 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, vector*, CKmer<3>*, long long unsigned int>, allocator*, CKmer<3>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<3>*, long long unsigned int>, tuple*, CKmer<3>*, long long unsigned int>)> >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, vector*, CKmer<3>*, long long unsigned int>, allocator*, CKmer<3>*, long long unsigned int> > > >; _Compare = RadulsSort::RadixSortMSD_impl, int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<3>*, long long unsigned int>, tuple*, CKmer<3>*, long long unsigned int>)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, inlined from 'void RadulsSort::RadixSortMSD_impl(KMER_T*, KMER_T*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64) [with KMER_T = CKmer<3>; COUNTER_TYPE = int]' at kmc_core/raduls_impl.h:713:8: @@ -1602,6 +1715,14 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1939 | __comp); | ~~~~~~~ +In file included from /usr/include/c++/12/queue:62, + from kmc_tools/queues.h:20, + from kmc_tools/kmc1_db_reader.h:18, + from kmc_tools/db_reader_factory.h:6: +/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, vector*, CKmer<2>*, long long unsigned int>, allocator*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<2>*, long long unsigned int>, tuple*, CKmer<2>*, long long unsigned int>)> >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, vector*, CKmer<2>*, long long unsigned int>, allocator*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<2>*, long long unsigned int>, tuple*, CKmer<2>*, long long unsigned int>)> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, vector*, CKmer<2>*, long long unsigned int>, allocator*, CKmer<2>*, long long unsigned int> > > >; _Compare = RadulsSort::RadixSortMSD_impl, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::*, CKmer<2>*, long long unsigned int>, tuple*, CKmer<2>*, long long unsigned int>)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, @@ -1612,6 +1733,14 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/algorithm:61, + from kmc_tools/kmc2_db_reader.h:24, + from kmc_tools/db_reader_factory.h:7: +/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1802 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple*, CKmer<2>*, long long unsigned int>}; _Tp = std::tuple*, CKmer<2>*, long long unsigned int>; _Alloc = std::allocator*, CKmer<2>*, long long unsigned int> >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple*, CKmer<2>*, long long unsigned int>; _Alloc = std::allocator*, CKmer<2>*, long long unsigned int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'void RadulsSort::RadixSortMSD_impl(KMER_T*, KMER_T*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64) [with KMER_T = CKmer<2>; COUNTER_TYPE = int]' at kmc_core/raduls_impl.h:685:26: @@ -1690,22 +1819,7 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/queue:62, - from kmc_tools/queues.h:20, - from kmc_tools/kmc1_db_reader.h:18, - from kmc_tools/db_reader_factory.h:6: -/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -In file included from /usr/include/c++/12/algorithm:61, - from kmc_tools/kmc2_db_reader.h:24, - from kmc_tools/db_reader_factory.h:7: -/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1802 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o In file included from /usr/include/c++/12/bits/stl_algo.h:60, from /usr/include/c++/12/algorithm:61, from /usr/include/c++/12/ext/algorithm:61, @@ -1741,6 +1855,7 @@ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ExpandKxmersBoth(uint64)::&, const pair&)> >]': /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 @@ -1774,8 +1889,142 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o /usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +In file included from /usr/include/c++/12/vector:70, + from kmc_tools/percent_progress.h:15, + from kmc_tools/percent_progress.cpp:11: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]', + inlined from 'uint32 CPercentProgress::RegisterItem(const std::string&, uint64)' at kmc_tools/percent_progress.cpp:24:20: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]', + inlined from 'uint32 CPercentProgress::RegisterItem(uint64)' at kmc_tools/percent_progress.cpp:31:20: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o +kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)': +kmc_tools/kff_info_reader.cpp:34:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 34 | fread(marker, 1, 3, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:39:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 39 | fread(marker, 1, 3, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:45:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 45 | fread(footer_size_str, 1, 12, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:54:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 54 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:61:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 61 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:67:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 67 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:76:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 76 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:89:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 89 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:92:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 92 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:96:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 96 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:99:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:105:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 105 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:111:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 111 | fread(tmp.data(), 1, sizeof(free_size), file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:116:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 116 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:136:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:141:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 141 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:150:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 150 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:154:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:161:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 161 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:173:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 173 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:182:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 182 | fread(tmp.data(), 1, 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': +kmc_tools/kff_info_reader.cpp:207:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 207 | fread(tmp.data(), 1, sizeof(uint64_t), file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:214:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 214 | fread(tmp.data(), 1, sizeof(uint64_t), file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()': +kmc_tools/kff_info_reader.cpp:253:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 253 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()': +kmc_tools/kff_info_reader.cpp:288:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 288 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kff_info_reader.cpp:290:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 290 | fread(tmp.data(), 1, 8, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algo.h:60, + from /usr/include/c++/12/algorithm:61, + from kmc_tools/kff_info_reader.cpp:7: +/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = CKFFIndexPair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1802 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1908 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from kmc_tools/kff_info_reader.h:3, + from kmc_tools/kff_info_reader.cpp:1: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFDataSection&}; _Tp = CKFFDataSection; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/map:61, from kmc_core/queues.h:20: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::tuple, std::allocator >, long long unsigned int>; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long unsigned int> > >]', @@ -1796,52 +2045,90 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from kmc_tools/kmc_tools.cpp:12: -/usr/include/c++/12/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 175 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]', + inlined from 'void CKFFInfoReader::ReadMinimizerSection()' at kmc_tools/kff_info_reader.cpp:296:31: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]', + inlined from 'void CKFFInfoReader::ReadRawSection()' at kmc_tools/kff_info_reader.cpp:260:31: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:63: +/usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*]': +/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1908 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, - | ^~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]', + inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, + inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, + inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, + inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8, + inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4, + inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17, + inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/12/bits/vector.tcc:462:28: +/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 137 | { return std::__do_uninit_copy(__first, __last, __result); } + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]', + inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, + inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, + inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, + inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8, + inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4, + inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17, + inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1281:30, + inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34: +/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 137 | { return std::__do_uninit_copy(__first, __last, __result); } + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator]', + inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator]', + inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:157:22: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, + inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11: +/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1937 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1938 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1939 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31: -/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, + inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11: +/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o +ranlib libkmc.a +mkdir -p bin +g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 +In file included from /usr/include/c++/12/vector:70, + from kmc_tools/kmc_tools.cpp:12: +/usr/include/c++/12/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 175 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'CMemoryBins::init(uint32, uint32, int64, int64, int64, int64, int64)::' at kmc_core/queues.h:1286:28, inlined from 'CThrowingOnCancelConditionVariable::wait >(std::unique_lock&, CMemoryBins::init(uint32, uint32, int64, int64, int64, int64, int64)::)::' at kmc_core/critical_error_handler.h:21:20, @@ -1930,6 +2217,46 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1908 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, + | ^~~~~~ +/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1937 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1938 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1939 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31: +/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1854 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from kmc_core/kmc_runner.h:14, from kmc_core/kmc_runner.cpp:11: @@ -1975,12 +2302,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<7>; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: @@ -2072,6 +2397,14 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: @@ -2108,48 +2441,6 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from kmc_tools/operations.h:24, - from kmc_tools/expression_node.h:14, - from kmc_tools/parser.h:14, - from kmc_tools/parameters_parser.h:15, - from kmc_tools/parameters_parser.cpp:11: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator]', - inlined from 'void CParametersParser::read_input_desc()' at kmc_tools/parameters_parser.cpp:251:29: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator]', - inlined from 'bool CParametersParser::read_output_for_transform()' at kmc_tools/parameters_parser.cpp:339:43: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator]', - inlined from 'bool CParametersParser::read_output_desc_for_simple()' at kmc_tools/parameters_parser.cpp:504:40: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 6]' at kmc_core/kmc.h:276:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -2175,23 +2466,6 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:754:26: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:768:27: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parser.cpp -o kmc_tools/parser.o /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: @@ -2208,6 +2482,20 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 7]' at kmc_tools/kmc2_db_reader.h:300:17: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 5]' at kmc_core/kmc.h:276:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -2233,20 +2521,6 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 7]' at kmc_tools/kmc2_db_reader.h:300:17: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'bool CTools::filter() [with unsigned int SIZE = 1]' at kmc_tools/kmc_tools.cpp:252:24: @@ -2272,26 +2546,11 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from kmc_tools/operations.h:24, - from kmc_tools/expression_node.h:14, - from kmc_tools/parser.h:14, - from kmc_tools/parser.cpp:11: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 1]' at kmc_core/kmc.h:1491:6: /usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator]', - inlined from 'void CParser::parseInputLine(const std::string&)' at kmc_tools/parser.cpp:147:31: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'bool CTools::filter() [with unsigned int SIZE = 7]' at kmc_tools/kmc_tools.cpp:252:24: @@ -2303,6 +2562,20 @@ /usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 5]' at kmc_tools/kmc2_db_reader.h:300:17: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 4]' at kmc_core/kmc.h:276:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -2328,20 +2601,6 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 5]' at kmc_tools/kmc2_db_reader.h:300:17: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:63: /usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*]': /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -2370,7 +2629,6 @@ /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFVariables*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFVariables*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFVariables*; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, @@ -2437,32 +2695,6 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', - inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:276:24: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, - inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8: -/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1937 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1938 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1939 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, - inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8: -/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1854 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<2>; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: @@ -2471,11 +2703,6 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', - inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 8]' at kmc_core/kmc.h:1491:6: -/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator]', inlined from 'bool CTools::transform() [with unsigned int SIZE = 5]' at kmc_tools/kmc_tools.cpp:428:45, inlined from 'bool CTools::Process() [with unsigned int SIZE = 5]' at kmc_tools/kmc_tools.cpp:531:20: @@ -2493,7 +2720,6 @@ /usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 2]' at kmc_tools/kmc2_db_reader.h:300:17: @@ -2501,13 +2727,13 @@ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', - inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:276:24: + inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:276:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, - inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8: + inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8: /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1937 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -2518,246 +2744,13 @@ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, - inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8: + inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8: /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', - inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 7]' at kmc_core/kmc.h:1491:6: -/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o -In file included from /usr/include/c++/12/vector:70, - from kmc_tools/percent_progress.h:15, - from kmc_tools/percent_progress.cpp:11: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]', - inlined from 'uint32 CPercentProgress::RegisterItem(const std::string&, uint64)' at kmc_tools/percent_progress.cpp:24:20: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]', - inlined from 'uint32 CPercentProgress::RegisterItem(uint64)' at kmc_tools/percent_progress.cpp:31:20: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o -In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', - inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 6]' at kmc_core/kmc.h:1491:6: -/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)': -kmc_tools/kff_info_reader.cpp:34:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 34 | fread(marker, 1, 3, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:39:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 39 | fread(marker, 1, 3, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:45:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 45 | fread(footer_size_str, 1, 12, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:54:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 54 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:61:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 61 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:67:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 67 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:76:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 76 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:89:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 89 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:92:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 92 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:96:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 96 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:99:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:105:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 105 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:111:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 111 | fread(tmp.data(), 1, sizeof(free_size), file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:116:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 116 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:136:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:141:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 141 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:150:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 150 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:154:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:161:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 161 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:173:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 173 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:182:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 182 | fread(tmp.data(), 1, 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': -kmc_tools/kff_info_reader.cpp:207:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 207 | fread(tmp.data(), 1, sizeof(uint64_t), file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:214:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 214 | fread(tmp.data(), 1, sizeof(uint64_t), file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()': -kmc_tools/kff_info_reader.cpp:253:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 253 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()': -kmc_tools/kff_info_reader.cpp:288:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 288 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kff_info_reader.cpp:290:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 290 | fread(tmp.data(), 1, 8, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algo.h:60, - from /usr/include/c++/12/algorithm:61, - from kmc_tools/kff_info_reader.cpp:7: -/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = CKFFIndexPair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1802 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1908 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from kmc_tools/kff_info_reader.h:3, - from kmc_tools/kff_info_reader.cpp:1: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFDataSection&}; _Tp = CKFFDataSection; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]', - inlined from 'void CKFFInfoReader::ReadMinimizerSection()' at kmc_tools/kff_info_reader.cpp:296:31: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]', - inlined from 'void CKFFInfoReader::ReadRawSection()' at kmc_tools/kff_info_reader.cpp:260:31: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:63: -/usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*]': -/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]', - inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, - inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, - inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, - inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8, - inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4, - inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17, - inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/12/bits/vector.tcc:462:28: -/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 137 | { return std::__do_uninit_copy(__first, __last, __result); } - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]', - inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, - inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, - inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, - inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8, - inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4, - inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17, - inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1281:30, - inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34: -/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 137 | { return std::__do_uninit_copy(__first, __last, __result); } - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator]', - inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator]', - inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:157:22: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, - inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11: -/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1937 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1938 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1939 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, - inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11: -/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1854 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -ranlib libkmc.a -mkdir -p bin -g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 -In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', - inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 5]' at kmc_core/kmc.h:1491:6: -/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', - inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 4]' at kmc_core/kmc.h:1491:6: -/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'bool CTools::filter() [with unsigned int SIZE = 3]' at kmc_tools/kmc_tools.cpp:252:24: @@ -2770,12 +2763,7 @@ 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', - inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 3]' at kmc_core/kmc.h:1491:6: -/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', - inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 2]' at kmc_core/kmc.h:1491:6: + inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 8]' at kmc_core/kmc.h:1491:6: /usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2790,6 +2778,36 @@ /usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', + inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:276:24: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, + inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8: +/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1937 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1938 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1939 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, + inlined from 'void CKMC::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8: +/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1854 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', + inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 7]' at kmc_core/kmc.h:1491:6: +/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator]', inlined from 'bool CTools::transform() [with unsigned int SIZE = 4]' at kmc_tools/kmc_tools.cpp:428:45, inlined from 'bool CTools::Process() [with unsigned int SIZE = 4]' at kmc_tools/kmc_tools.cpp:531:20, @@ -2848,12 +2866,39 @@ /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1530 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', + inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 6]' at kmc_core/kmc.h:1491:6: +/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', + inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 5]' at kmc_core/kmc.h:1491:6: +/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', + inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 4]' at kmc_core/kmc.h:1491:6: +/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', + inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 3]' at kmc_core/kmc.h:1491:6: +/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]', + inlined from 'KMC::Stage2Results CKMC::ProcessStage2_impl() [with unsigned int SIZE = 2]' at kmc_core/kmc.h:1491:6: +/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/list:63, from kmc_core/queues.h:18: /usr/include/c++/12/bits/stl_list.h: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_insert(iterator, _Args&& ...) [with _Args = {int, long long unsigned int&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/12/bits/stl_list.h:2003:8: note: parameter passing for argument of type 'std::__cxx11::list >::iterator' changed in GCC 7.1 2003 | _M_insert(iterator __position, _Args&&... __args) | ^~~~~~~~~ +mkdir -p bin +g++ -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ExpandKxmersBoth(uint64)::&, const pair&)> >]': /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1908 | __introsort_loop(_RandomAccessIterator __first, @@ -2882,8 +2927,6 @@ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -mkdir -p bin -g++ -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SubArrayDesc}; _Tp = SubArrayDesc; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: @@ -3185,7 +3228,7 @@ make[2]: Leaving directory '/build/kmc-3.2.1+dfsg' make[1]: Leaving directory '/build/kmc-3.2.1+dfsg' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-myc1UOmc + rm -fr -- /tmp/dh-xdg-rundir-jv4zSAA_ create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars @@ -3247,25 +3290,27 @@ install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 + mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 - mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 make[1]: Leaving directory '/build/kmc-3.2.1+dfsg' dh_perl dh_link @@ -3273,25 +3318,25 @@ dh_compress cd debian/kmc cd debian/libkmc-dev - chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 - gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 chmod a-x usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian + chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 + gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/kmc-3.2.1+dfsg' cd '/build/kmc-3.2.1+dfsg' dh_fixperms - find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -m0755 -d debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf @@ -3300,22 +3345,22 @@ chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf/kmc.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc.a - strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc_core.a install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4/e9ad250d455ec1c107d741c26d5f2aab863d2f.debug + strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc_core.a chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4/e9ad250d455ec1c107d741c26d5f2aab863d2f.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4/e9ad250d455ec1c107d741c26d5f2aab863d2f.debug debian/kmc/usr/bin/kmc_dump - install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96 - objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug - chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug - strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools - objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug debian/kmc/usr/bin/kmc_tools install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb/a0da771621185fb54c0c4832adf3809abb7ee5.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb/a0da771621185fb54c0c4832adf3809abb7ee5.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb/a0da771621185fb54c0c4832adf3809abb7ee5.debug debian/kmc/usr/bin/kmc + install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96 + objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug + chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug + strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools + objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug debian/kmc/usr/bin/kmc_tools install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/kmc/usr/lib/debug/.dwz @@ -3328,9 +3373,9 @@ rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/kmc/DEBIAN - dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc -dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_tools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin + dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_tools dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_tools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_dump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb install -m0755 -d debian/kmc/DEBIAN @@ -3339,38 +3384,38 @@ debian/rules override_dh_gencontrol make[1]: Entering directory '/build/kmc-3.2.1+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.4~rc2-2), " - install -m0755 -d debian/libkmc-dev/DEBIAN - echo misc:Depends= >> debian/libkmc-dev.substvars - echo misc:Pre-Depends= >> debian/libkmc-dev.substvars - dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " install -m0755 -d debian/kmc/DEBIAN echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=9601b098b076ec5a41d9b935c6b4acd8ff63200d d4e9ad250d455ec1c107d741c26d5f2aab863d2f fba0da771621185fb54c0c4832adf3809abb7ee5" -DSection=debug -UMulti-Arch -UReplaces -UBreaks -dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined - chmod 0644 -- debian/libkmc-dev/DEBIAN/control + install -m0755 -d debian/libkmc-dev/DEBIAN + echo misc:Depends= >> debian/libkmc-dev.substvars + echo misc:Pre-Depends= >> debian/libkmc-dev.substvars + dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " +dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined + chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/kmc/DEBIAN/control make[1]: Leaving directory '/build/kmc-3.2.1+dfsg' dh_md5sums install -m0755 -d debian/kmc/DEBIAN cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libkmc-dev/DEBIAN + cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN - cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/libkmc-dev .. - dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb --root-owner-group --build debian/kmc .. + dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.1+dfsg-1_armhf.deb'. -dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.1+dfsg-1_armhf.deb'. dpkg-deb: building package 'kmc' in '../kmc_3.2.1+dfsg-1_armhf.deb'. + dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. +dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.1+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../kmc_3.2.1+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../kmc_3.2.1+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3378,12 +3423,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20472/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/12339 and its subdirectories -I: Current time: Tue May 9 10:29:16 -12 2023 -I: pbuilder-time-stamp: 1683671356 +I: removing directory /srv/workspace/pbuilder/20472 and its subdirectories +I: Current time: Wed May 10 12:47:32 +14 2023 +I: pbuilder-time-stamp: 1683672452