Diff of the two buildlogs: -- --- b1/build.log 2023-05-06 16:29:21.608401110 +0000 +++ b2/build.log 2023-05-06 16:35:04.517360006 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 6 04:12:26 -12 2023 -I: pbuilder-time-stamp: 1683389546 +I: Current time: Sun May 7 06:29:38 +14 2023 +I: pbuilder-time-stamp: 1683390578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./golang-github-shenwei356-bio_0.6.2.orig.tar.gz] I: copying [./golang-github-shenwei356-bio_0.6.2-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Jan 16 00:51:47 2022 -12 +gpgv: Signature made Mon Jan 17 02:51:47 2022 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key @@ -28,135 +28,167 @@ dpkg-source: info: applying adjust-shenwei356-kmers.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/14701/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 7 06:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='99d80a4588ba4556bc8767ccdba0a98b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='14701' - PS1='# ' - PS2='> ' + INVOCATION_ID=8f72c9737a1a45e2893a1c2f436ac128 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2473 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ts7NcNhE/pbuilderrc_ruhn --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ts7NcNhE/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.6.2-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ts7NcNhE/pbuilderrc_ee1G --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ts7NcNhE/b2 --logfile b2/build.log --extrapackages usrmerge golang-github-shenwei356-bio_0.6.2-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux wbq0 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/14701/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 7 06:30 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -296,7 +328,7 @@ Get: 86 http://deb.debian.org/debian bookworm/main armhf golang-github-shenwei356-util-dev all 0.5.0-1 [35.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf golang-github-will-rowe-nthash-dev all 0.4.0-1 [5644 B] Get: 88 http://deb.debian.org/debian bookworm/main armhf golang-github-zeebo-wyhash-dev all 0.0.1-3 [23.5 kB] -Fetched 132 MB in 45s (2958 kB/s) +Fetched 132 MB in 19s (7147 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -662,8 +694,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/golang-github-shenwei356-bio-0.6.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.6.2-1_source.changes +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/golang-github-shenwei356-bio-0.6.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.6.2-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.6.2-1 dpkg-buildpackage: info: source distribution unstable @@ -681,21 +724,21 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 3 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util -internal/unsafeheader + cd _build && go install -trimpath -v -p 4 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util internal/goarch +internal/unsafeheader internal/goexperiment internal/cpu -internal/abi internal/goos +internal/abi runtime/internal/math runtime/internal/sys runtime/internal/syscall internal/itoa math/bits -unicode/utf8 internal/bytealg runtime/internal/atomic +unicode/utf8 internal/race math sync/atomic @@ -704,15 +747,15 @@ container/list crypto/internal/subtle crypto/subtle -unicode/utf16 crypto/internal/boring/sig +unicode/utf16 vendor/golang.org/x/crypto/cryptobyte/asn1 internal/nettrace vendor/golang.org/x/crypto/internal/subtle -sync internal/reflectlite -math/rand +sync internal/testlog +math/rand internal/singleflight runtime/cgo errors @@ -721,86 +764,86 @@ strconv internal/oserror syscall -reflect -internal/syscall/unix -time internal/safefilepath -internal/syscall/execenv path bytes -internal/poll -io/fs -internal/fmtsort +reflect strings -encoding/binary -os bufio +internal/syscall/unix +time +internal/syscall/execenv hash hash/crc32 -context crypto -crypto/cipher crypto/internal/randutil crypto/internal/nistec/fiat +crypto/rc4 +vendor/golang.org/x/net/dns/dnsmessage +internal/poll +io/fs +context +internal/fmtsort +encoding/binary +os +vendor/golang.org/x/text/transform +net/http/internal/ascii +github.com/twotwotwo/sorts +github.com/twotwotwo/sorts/sortutil +crypto/cipher +crypto/internal/edwards25519/field fmt crypto/internal/boring -crypto/aes crypto/des -crypto/sha512 -crypto/internal/edwards25519/field -compress/flate -math/big -compress/gzip -github.com/klauspost/compress/flate +crypto/aes crypto/internal/nistec -crypto/rand -crypto/internal/boring/bbig -encoding/asn1 -github.com/klauspost/pgzip -crypto/elliptic +crypto/sha512 crypto/internal/edwards25519 -vendor/golang.org/x/crypto/cryptobyte crypto/hmac crypto/md5 -crypto/rc4 -crypto/ed25519 -crypto/ecdsa -crypto/rsa crypto/sha1 +compress/flate +math/big crypto/sha256 -crypto/dsa encoding/hex encoding/base64 internal/godebug -crypto/x509/pkix -vendor/golang.org/x/net/dns/dnsmessage -encoding/pem internal/intern -net/url net/netip +encoding/pem +compress/gzip +github.com/klauspost/compress/flate +net/url +net path/filepath vendor/golang.org/x/crypto/chacha20 vendor/golang.org/x/crypto/internal/poly1305 -vendor/golang.org/x/crypto/curve25519/internal/field -net vendor/golang.org/x/crypto/chacha20poly1305 +crypto/rand +crypto/elliptic +crypto/internal/boring/bbig +github.com/klauspost/pgzip +encoding/asn1 +crypto/ed25519 +crypto/rsa +crypto/dsa +vendor/golang.org/x/crypto/curve25519/internal/field vendor/golang.org/x/crypto/hkdf -vendor/golang.org/x/text/transform vendor/golang.org/x/crypto/curve25519 log -vendor/golang.org/x/text/unicode/norm +vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix vendor/golang.org/x/text/unicode/bidi -vendor/golang.org/x/text/secure/bidirule +vendor/golang.org/x/text/unicode/norm +crypto/ecdsa vendor/golang.org/x/net/http2/hpack +vendor/golang.org/x/text/secure/bidirule mime -vendor/golang.org/x/net/idna mime/quotedprintable net/http/internal -net/http/internal/ascii os/exec os/user -github.com/twotwotwo/sorts -github.com/twotwotwo/sorts/sortutil +vendor/golang.org/x/net/idna github.com/shenwei356/util/byteutil github.com/shenwei356/bio/seq golang.org/x/sys/unix @@ -810,20 +853,20 @@ vendor/golang.org/x/net/http/httpguts vendor/golang.org/x/net/http/httpproxy mime/multipart -github.com/edsrzf/mmap-go regexp github.com/will-rowe/nthash github.com/zeebo/wyhash +github.com/edsrzf/mmap-go +github.com/shenwei356/bio/util crypto/tls github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/sketches -github.com/shenwei356/bio/util net/http/httptrace net/http github.com/shenwei356/xopen github.com/shenwei356/breader -github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/seqio/fastx +github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/featio/gtf debian/rules override_dh_auto_test make[1]: Entering directory '/build/golang-github-shenwei356-bio-0.6.2' @@ -831,45 +874,45 @@ cp seqio/fai/seq.fa* _build/src/github.com/shenwei356/bio/seqio/fai cp featio/gtf/test*.gtf _build/src/github.com/shenwei356/bio/featio/gtf dh_auto_test - cd _build && go test -vet=off -v -p 3 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util + cd _build && go test -vet=off -v -p 4 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util === RUN TestGTF -{140 Twinscan inter 5141 8522 0x1010790 []} -{140 Twinscan inter_CNS 8523 9711 0x10107a0 []} -{140 Twinscan inter 9712 13182 0x10107a8 []} -{140 Twinscan 3UTR 65149 65487 0x10107b0 []} -{140 Twinscan 3UTR 66823 66992 0x10107b8 []} -{140 Twinscan stop_codon 66993 66995 0x10107c0 0x1018508 []} -{140 Twinscan CDS 66996 66999 0x10107c8 0x101850c []} -{140 Twinscan intron_CNS 70103 70151 0x10107d0 []} -{140 Twinscan CDS 70207 70294 0x10107d8 0x1018570 []} -{140 Twinscan CDS 71696 71807 0x10107e0 0x1018574 []} -{140 Twinscan start_codon 71805 71806 0x10107e8 0x1018578 []} -{140 Twinscan start_codon 73222 73222 0x10107f0 0x101857c []} -{140 Twinscan CDS 73222 73222 0x10107f8 0x1018580 []} -{140 Twinscan 5UTR 73223 73504 0x1010800 []} ---- PASS: TestGTF (0.01s) +{140 Twinscan inter 5141 8522 0x2810790 []} +{140 Twinscan inter_CNS 8523 9711 0x28107a0 []} +{140 Twinscan inter 9712 13182 0x28107a8 []} +{140 Twinscan 3UTR 65149 65487 0x28107b0 []} +{140 Twinscan 3UTR 66823 66992 0x28107b8 []} +{140 Twinscan stop_codon 66993 66995 0x28107c0 0x28184d8 []} +{140 Twinscan CDS 66996 66999 0x28107c8 0x28184dc []} +{140 Twinscan intron_CNS 70103 70151 0x28107d0 []} +{140 Twinscan CDS 70207 70294 0x28107d8 0x2818540 []} +{140 Twinscan CDS 71696 71807 0x28107e0 0x2818544 []} +{140 Twinscan start_codon 71805 71806 0x28107e8 0x2818548 []} +{140 Twinscan start_codon 73222 73222 0x28107f0 0x281854c []} +{140 Twinscan CDS 73222 73222 0x28107f8 0x2818550 []} +{140 Twinscan 5UTR 73223 73504 0x2810800 []} +--- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0x109a000 []} -{381 Twinscan exon 300 401 0x109a010 []} -{381 Twinscan CDS 380 401 0x109a018 0x109000c []} -{381 Twinscan exon 501 650 0x109a020 []} -{381 Twinscan CDS 501 650 0x109a028 0x1090020 []} -{381 Twinscan exon 700 800 0x109a030 []} -{381 Twinscan CDS 700 707 0x109a038 0x1090024 []} -{381 Twinscan exon 900 1000 0x109a040 []} -{381 Twinscan start_codon 380 382 0x109a048 0x1090028 []} -{381 Twinscan stop_codon 708 710 0x109a050 0x109002c []} +{381 Twinscan exon 150 200 0x2810828 []} +{381 Twinscan exon 300 401 0x2810838 []} +{381 Twinscan CDS 380 401 0x2810840 0x281857c []} +{381 Twinscan exon 501 650 0x2810848 []} +{381 Twinscan CDS 501 650 0x2810850 0x28185c0 []} +{381 Twinscan exon 700 800 0x2810858 []} +{381 Twinscan CDS 700 707 0x2810860 0x28185c4 []} +{381 Twinscan exon 900 1000 0x2810868 []} +{381 Twinscan start_codon 380 382 0x2810870 0x28185c8 []} +{381 Twinscan stop_codon 708 710 0x2810878 0x28185cc []} --- PASS: TestGTF2 (0.00s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0x109a078 0x109006c []} -{NC_002516.2 genbank CDS 6261828 6263564 0x109a088 0x10900b0 []} -{NC_002516.2 genbank gene 6263805 6264212 0x109a090 0x10900b4 []} -{NC_002516.2 genbank CDS 6263805 6264212 0x109a098 0x10900b8 []} -{NC_002516.2 genbank gene 6264227 6264361 0x109a0a0 0x10900bc []} -{NC_002516.2 genbank CDS 6264227 6264361 0x109a0a8 0x10900c0 []} +{NC_002516.2 genbank gene 6261828 6263564 0x28108a0 0x28185fc []} +{NC_002516.2 genbank CDS 6261828 6263564 0x28108b0 0x2818630 []} +{NC_002516.2 genbank gene 6263805 6264212 0x28108b8 0x2818634 []} +{NC_002516.2 genbank CDS 6263805 6264212 0x28108c0 0x2818638 []} +{NC_002516.2 genbank gene 6264227 6264361 0x28108c8 0x281863c []} +{NC_002516.2 genbank CDS 6264227 6264361 0x28108d0 0x2818640 []} --- PASS: TestGTF3 (0.00s) PASS -ok github.com/shenwei356/bio/featio/gtf 0.051s +ok github.com/shenwei356/bio/featio/gtf 0.013s === RUN Test --- PASS: Test (0.00s) === RUN TestBases2AmbBase @@ -891,35 +934,35 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.178s +ok github.com/shenwei356/bio/seq 0.141s === RUN TestFastaReader --- PASS: TestFastaReader (0.00s) === RUN TestFastaReaderNotMapWholeFile --- PASS: TestFastaReaderNotMapWholeFile (0.00s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.031s +ok github.com/shenwei356/bio/seqio/fai 0.023s === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.02s) +--- PASS: TestFastaReader2 (0.01s) === RUN TestFastaReader3 ---- PASS: TestFastaReader3 (0.11s) +--- PASS: TestFastaReader3 (0.01s) === RUN TestFastqReadern ---- PASS: TestFastqReadern (0.12s) +--- PASS: TestFastqReadern (0.02s) === RUN TestFastaReader ---- PASS: TestFastaReader (0.13s) +--- PASS: TestFastaReader (0.01s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.12s) +--- PASS: TestFastqReader (0.01s) === RUN TestFastqReader2 ---- PASS: TestFastqReader2 (0.11s) +--- PASS: TestFastqReader2 (0.01s) === RUN TestFastqReader3 ---- PASS: TestFastqReader3 (0.11s) +--- PASS: TestFastqReader3 (0.02s) === RUN TestBlankFile ---- PASS: TestBlankFile (0.11s) +--- PASS: TestBlankFile (0.02s) === RUN TestBlankFile2 --- PASS: TestBlankFile2 (0.00s) === RUN TestEmptyFile --- PASS: TestEmptyFile (0.00s) PASS -ok github.com/shenwei356/bio/seqio/fastx 1.029s +ok github.com/shenwei356/bio/seqio/fastx 0.156s === RUN TestProteinIterator --- PASS: TestProteinIterator (0.00s) === RUN TestKmerIterator @@ -933,15 +976,15 @@ === RUN TestSyncmer --- PASS: TestSyncmer (0.00s) PASS -ok github.com/shenwei356/bio/sketches 0.234s +ok github.com/shenwei356/bio/sketches 0.107s === RUN TestPackTwoTaxids --- PASS: TestPackTwoTaxids (0.00s) PASS -ok github.com/shenwei356/bio/taxdump 0.059s +ok github.com/shenwei356/bio/taxdump 0.018s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.068s +ok github.com/shenwei356/bio/util 0.008s make[1]: Leaving directory '/build/golang-github-shenwei356-bio-0.6.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang @@ -974,12 +1017,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2473/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/14701 and its subdirectories -I: Current time: Sat May 6 04:29:12 -12 2023 -I: pbuilder-time-stamp: 1683390552 +I: removing directory /srv/workspace/pbuilder/2473 and its subdirectories +I: Current time: Sun May 7 06:34:57 +14 2023 +I: pbuilder-time-stamp: 1683390897