Diff of the two buildlogs: -- --- b1/build.log 2023-05-31 13:10:02.191437460 +0000 +++ b2/build.log 2023-05-31 14:00:05.323588146 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 31 01:03:52 -12 2023 -I: pbuilder-time-stamp: 1685538232 +I: Current time: Thu Jun 1 03:10:33 +14 2023 +I: pbuilder-time-stamp: 1685538633 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./cdk_2.8.orig.tar.gz] I: copying [./cdk_2.8-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Oct 10 19:14:11 2022 -12 +gpgv: Signature made Tue Oct 11 21:14:11 2022 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -28,135 +28,167 @@ dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/10868/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 1 03:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0c4c7954eb974ca188e39689d00f4968' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='10868' - PS1='# ' - PS2='> ' + INVOCATION_ID=9e32a51181ed480bae310be40f325168 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=19781 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bkgMCDSt/pbuilderrc_3G4z --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bkgMCDSt/b1 --logfile b1/build.log cdk_2.8-2.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bkgMCDSt/pbuilderrc_1QGg --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bkgMCDSt/b2 --logfile b2/build.log --extrapackages usrmerge cdk_2.8-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux jtx1c 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-armmp #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/10868/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 1 03:12 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -540,7 +572,7 @@ Get: 296 http://deb.debian.org/debian bookworm/main armhf maven all 3.8.7-1 [18.9 kB] Get: 297 http://deb.debian.org/debian bookworm/main armhf maven-repo-helper all 1.11 [142 kB] Get: 298 http://deb.debian.org/debian bookworm/main armhf maven-debian-helper all 2.6.3 [108 kB] -Fetched 366 MB in 33s (11.0 MB/s) +Fetched 366 MB in 58s (6332 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) @@ -1934,8 +1966,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/cdk-2.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cdk_2.8-2_source.changes +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/cdk-2.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cdk_2.8-2_source.changes dpkg-buildpackage: info: source package cdk dpkg-buildpackage: info: source version 1:2.8-2 dpkg-buildpackage: info: source distribution unstable @@ -2365,8 +2408,8 @@ [INFO] /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/iterator/IteratingSDFReader.java: Recompile with -Xlint:deprecation for details. [INFO] /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/MDLReader.java: /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/MDLReader.java uses or overrides a deprecated API that is marked for removal. [INFO] /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/MDLReader.java: Recompile with -Xlint:removal for details. -[INFO] /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/RGroupQueryReader.java: Some input files use unchecked or unsafe operations. -[INFO] /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/RGroupQueryReader.java: Recompile with -Xlint:unchecked for details. +[INFO] /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/MDLRXNWriter.java: Some input files use unchecked or unsafe operations. +[INFO] /build/cdk-2.8/storage/ctab/src/main/java/org/openscience/cdk/io/MDLRXNWriter.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ cdk-ctab --- [INFO] Not copying test resources @@ -3421,10 +3464,10 @@ File "SMARTSParserVisitor.java" does not exist. Will create one. File "SMARTSParserDefaultVisitor.java" does not exist. Will create one. File "JJTSMARTSParserState.java" does not exist. Will create one. -Annotated grammar generated successfully in /build/cdk-2.8/legacy/target/javacc-1685538475950/node/SMARTSParser.jj +Annotated grammar generated successfully in /build/cdk-2.8/legacy/target/javacc-1685540443945/node/SMARTSParser.jj Java Compiler Compiler Version 7.0.12 (Parser Generator) (type "javacc" with no arguments for help) -Reading from file /build/cdk-2.8/legacy/target/javacc-1685538475950/node/SMARTSParser.jj . . . +Reading from file /build/cdk-2.8/legacy/target/javacc-1685540443945/node/SMARTSParser.jj . . . File "TokenMgrError.java" does not exist. Will create one. File "ParseException.java" does not exist. Will create one. File "Token.java" does not exist. Will create one. @@ -3489,72 +3532,72 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for cdk 2.8: [INFO] -[INFO] cdk ................................................ SUCCESS [ 0.005 s] -[INFO] cdk-base ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-interfaces ..................................... SUCCESS [ 6.933 s] -[INFO] cdk-core ........................................... SUCCESS [ 10.489 s] -[INFO] cdk-standard ....................................... SUCCESS [ 7.311 s] -[INFO] cdk-atomtype ....................................... SUCCESS [ 0.641 s] -[INFO] cdk-valencycheck ................................... SUCCESS [ 0.870 s] -[INFO] cdk-data ........................................... SUCCESS [ 4.640 s] -[INFO] cdk-silent ......................................... SUCCESS [ 3.156 s] -[INFO] cdk-datadebug ...................................... SUCCESS [ 3.111 s] -[INFO] cdk-isomorphism .................................... SUCCESS [ 2.044 s] -[INFO] cdk-dict ........................................... SUCCESS [ 0.750 s] -[INFO] cdk-reaction ....................................... SUCCESS [ 2.166 s] -[INFO] cdk-storage ........................................ SUCCESS [ 0.001 s] -[INFO] cdk-ioformats ...................................... SUCCESS [ 1.313 s] -[INFO] cdk-ctab ........................................... SUCCESS [ 2.495 s] -[INFO] cdk-tool ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-smarts ......................................... SUCCESS [ 0.959 s] -[INFO] cdk-formula ........................................ SUCCESS [ 1.010 s] -[INFO] cdk-descriptor ..................................... SUCCESS [ 0.001 s] -[INFO] cdk-fingerprint .................................... SUCCESS [ 1.508 s] -[INFO] cdk-cip ............................................ SUCCESS [ 0.396 s] -[INFO] cdk-signature ...................................... SUCCESS [ 0.347 s] -[INFO] cdk-qsar ........................................... SUCCESS [ 0.289 s] -[INFO] cdk-charges ........................................ SUCCESS [ 0.639 s] -[INFO] cdk-forcefield ..................................... SUCCESS [ 0.989 s] -[INFO] cdk-qsaratomic ..................................... SUCCESS [ 1.212 s] -[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.385 s] -[INFO] cdk-io ............................................. SUCCESS [ 2.342 s] -[INFO] cdk-libiocml ....................................... SUCCESS [ 0.755 s] -[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.412 s] -[INFO] cdk-smiles ......................................... SUCCESS [ 1.235 s] -[INFO] cdk-hash ........................................... SUCCESS [ 0.685 s] -[INFO] cdk-fragment ....................................... SUCCESS [ 0.320 s] -[INFO] cdk-qsarmolecular .................................. SUCCESS [ 2.408 s] -[INFO] cdk-pdb ............................................ SUCCESS [ 0.929 s] -[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.268 s] -[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.228 s] -[INFO] cdk-display ........................................ SUCCESS [ 0.001 s] -[INFO] cdk-render ......................................... SUCCESS [ 0.500 s] -[INFO] cdk-renderbasic .................................... SUCCESS [ 1.821 s] -[INFO] cdk-renderawt ...................................... SUCCESS [ 0.373 s] -[INFO] cdk-renderextra .................................... SUCCESS [ 0.605 s] -[INFO] cdk-misc ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-control ........................................ SUCCESS [ 0.180 s] -[INFO] cdk-extra .......................................... SUCCESS [ 1.685 s] -[INFO] cdk-diff ........................................... SUCCESS [ 0.393 s] -[INFO] cdk-log4j .......................................... SUCCESS [ 0.251 s] -[INFO] cdk-slf4j .......................................... SUCCESS [ 0.175 s] -[INFO] cdk-libiomd ........................................ SUCCESS [ 0.440 s] -[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.294 s] -[INFO] cdk-sdg ............................................ SUCCESS [ 1.554 s] -[INFO] cdk-builder3d ...................................... SUCCESS [ 0.780 s] -[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.270 s] -[INFO] cdk-group .......................................... SUCCESS [ 0.411 s] -[INFO] cdk-pcore .......................................... SUCCESS [ 0.454 s] -[INFO] cdk-structgen ...................................... SUCCESS [ 0.827 s] -[INFO] cdk-model .......................................... SUCCESS [ 0.329 s] -[INFO] cdk-legacy ......................................... SUCCESS [ 8.799 s] -[INFO] cdk-app ............................................ SUCCESS [ 0.001 s] -[INFO] cdk-depict ......................................... SUCCESS [ 1.172 s] +[INFO] cdk ................................................ SUCCESS [ 0.254 s] +[INFO] cdk-base ........................................... SUCCESS [ 0.017 s] +[INFO] cdk-interfaces ..................................... SUCCESS [01:13 min] +[INFO] cdk-core ........................................... SUCCESS [01:47 min] +[INFO] cdk-standard ....................................... SUCCESS [01:24 min] +[INFO] cdk-atomtype ....................................... SUCCESS [ 6.332 s] +[INFO] cdk-valencycheck ................................... SUCCESS [ 7.477 s] +[INFO] cdk-data ........................................... SUCCESS [ 48.585 s] +[INFO] cdk-silent ......................................... SUCCESS [ 31.653 s] +[INFO] cdk-datadebug ...................................... SUCCESS [ 31.431 s] +[INFO] cdk-isomorphism .................................... SUCCESS [ 19.188 s] +[INFO] cdk-dict ........................................... SUCCESS [ 6.082 s] +[INFO] cdk-reaction ....................................... SUCCESS [ 17.942 s] +[INFO] cdk-storage ........................................ SUCCESS [ 0.003 s] +[INFO] cdk-ioformats ...................................... SUCCESS [ 12.285 s] +[INFO] cdk-ctab ........................................... SUCCESS [ 26.026 s] +[INFO] cdk-tool ........................................... SUCCESS [ 0.008 s] +[INFO] cdk-smarts ......................................... SUCCESS [ 9.623 s] +[INFO] cdk-formula ........................................ SUCCESS [ 10.567 s] +[INFO] cdk-descriptor ..................................... SUCCESS [ 0.003 s] +[INFO] cdk-fingerprint .................................... SUCCESS [ 14.574 s] +[INFO] cdk-cip ............................................ SUCCESS [ 3.983 s] +[INFO] cdk-signature ...................................... SUCCESS [ 3.075 s] +[INFO] cdk-qsar ........................................... SUCCESS [ 2.894 s] +[INFO] cdk-charges ........................................ SUCCESS [ 6.211 s] +[INFO] cdk-forcefield ..................................... SUCCESS [ 10.559 s] +[INFO] cdk-qsaratomic ..................................... SUCCESS [ 11.778 s] +[INFO] cdk-qsarbond ....................................... SUCCESS [ 3.557 s] +[INFO] cdk-io ............................................. SUCCESS [ 21.355 s] +[INFO] cdk-libiocml ....................................... SUCCESS [ 7.634 s] +[INFO] cdk-qsarcml ........................................ SUCCESS [ 3.838 s] +[INFO] cdk-smiles ......................................... SUCCESS [ 12.005 s] +[INFO] cdk-hash ........................................... SUCCESS [ 6.137 s] +[INFO] cdk-fragment ....................................... SUCCESS [ 2.961 s] +[INFO] cdk-qsarmolecular .................................. SUCCESS [ 22.544 s] +[INFO] cdk-pdb ............................................ SUCCESS [ 10.770 s] +[INFO] cdk-qsarprotein .................................... SUCCESS [ 2.622 s] +[INFO] cdk-qsarsubstance .................................. SUCCESS [ 1.463 s] +[INFO] cdk-display ........................................ SUCCESS [ 0.003 s] +[INFO] cdk-render ......................................... SUCCESS [ 4.729 s] +[INFO] cdk-renderbasic .................................... SUCCESS [ 19.738 s] +[INFO] cdk-renderawt ...................................... SUCCESS [ 2.988 s] +[INFO] cdk-renderextra .................................... SUCCESS [ 6.399 s] +[INFO] cdk-misc ........................................... SUCCESS [ 0.012 s] +[INFO] cdk-control ........................................ SUCCESS [ 1.967 s] +[INFO] cdk-extra .......................................... SUCCESS [ 17.889 s] +[INFO] cdk-diff ........................................... SUCCESS [ 3.592 s] +[INFO] cdk-log4j .......................................... SUCCESS [ 2.811 s] +[INFO] cdk-slf4j .......................................... SUCCESS [ 1.929 s] +[INFO] cdk-libiomd ........................................ SUCCESS [ 4.354 s] +[INFO] cdk-pdbcml ......................................... SUCCESS [ 3.181 s] +[INFO] cdk-sdg ............................................ SUCCESS [ 19.018 s] +[INFO] cdk-builder3d ...................................... SUCCESS [ 8.056 s] +[INFO] cdk-builder3dtools ................................. SUCCESS [ 2.716 s] +[INFO] cdk-group .......................................... SUCCESS [ 4.806 s] +[INFO] cdk-pcore .......................................... SUCCESS [ 4.653 s] +[INFO] cdk-structgen ...................................... SUCCESS [ 9.171 s] +[INFO] cdk-model .......................................... SUCCESS [ 4.546 s] +[INFO] cdk-legacy ......................................... SUCCESS [01:40 min] +[INFO] cdk-app ............................................ SUCCESS [ 0.011 s] +[INFO] cdk-depict ......................................... SUCCESS [ 12.816 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 01:25 min -[INFO] Finished at: 2023-05-31T01:08:04-12:00 +[INFO] Total time: 14:50 min +[INFO] Finished at: 2023-06-01T03:42:20+14:00 [INFO] ------------------------------------------------------------------------  dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/cdk-2.8 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/cdk-2.8/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/cdk-2.8/debian -Dmaven.repo.local=/build/cdk-2.8/debian/maven-repo --batch-mode test @@ -4743,72 +4786,72 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for cdk 2.8: [INFO] -[INFO] cdk ................................................ SUCCESS [ 0.005 s] -[INFO] cdk-base ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-interfaces ..................................... SUCCESS [ 1.515 s] -[INFO] cdk-core ........................................... SUCCESS [ 0.182 s] -[INFO] cdk-standard ....................................... SUCCESS [ 0.106 s] -[INFO] cdk-atomtype ....................................... SUCCESS [ 0.081 s] -[INFO] cdk-valencycheck ................................... SUCCESS [ 0.071 s] -[INFO] cdk-data ........................................... SUCCESS [ 0.101 s] -[INFO] cdk-silent ......................................... SUCCESS [ 0.072 s] -[INFO] cdk-datadebug ...................................... SUCCESS [ 0.079 s] -[INFO] cdk-isomorphism .................................... SUCCESS [ 0.074 s] -[INFO] cdk-dict ........................................... SUCCESS [ 0.091 s] -[INFO] cdk-reaction ....................................... SUCCESS [ 0.089 s] -[INFO] cdk-storage ........................................ SUCCESS [ 0.001 s] -[INFO] cdk-ioformats ...................................... SUCCESS [ 0.102 s] -[INFO] cdk-ctab ........................................... SUCCESS [ 0.081 s] -[INFO] cdk-tool ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-smarts ......................................... SUCCESS [ 0.078 s] -[INFO] cdk-formula ........................................ SUCCESS [ 0.066 s] -[INFO] cdk-descriptor ..................................... SUCCESS [ 0.001 s] -[INFO] cdk-fingerprint .................................... SUCCESS [ 0.137 s] -[INFO] cdk-cip ............................................ SUCCESS [ 0.070 s] -[INFO] cdk-signature ...................................... SUCCESS [ 0.082 s] -[INFO] cdk-qsar ........................................... SUCCESS [ 0.069 s] -[INFO] cdk-charges ........................................ SUCCESS [ 0.090 s] -[INFO] cdk-forcefield ..................................... SUCCESS [ 0.107 s] -[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.111 s] -[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.090 s] -[INFO] cdk-io ............................................. SUCCESS [ 10.793 s] -[INFO] cdk-libiocml ....................................... SUCCESS [ 1.949 s] -[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.755 s] -[INFO] cdk-smiles ......................................... SUCCESS [ 0.082 s] -[INFO] cdk-hash ........................................... SUCCESS [ 0.059 s] -[INFO] cdk-fragment ....................................... SUCCESS [ 0.075 s] -[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.125 s] -[INFO] cdk-pdb ............................................ SUCCESS [ 1.407 s] -[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.461 s] -[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.087 s] -[INFO] cdk-display ........................................ SUCCESS [ 0.001 s] -[INFO] cdk-render ......................................... SUCCESS [ 0.059 s] -[INFO] cdk-renderbasic .................................... SUCCESS [ 0.074 s] -[INFO] cdk-renderawt ...................................... SUCCESS [ 0.067 s] -[INFO] cdk-renderextra .................................... SUCCESS [ 0.072 s] -[INFO] cdk-misc ........................................... SUCCESS [ 0.001 s] -[INFO] cdk-control ........................................ SUCCESS [ 0.039 s] -[INFO] cdk-extra .......................................... SUCCESS [ 4.056 s] -[INFO] cdk-diff ........................................... SUCCESS [ 0.055 s] -[INFO] cdk-log4j .......................................... SUCCESS [ 0.053 s] -[INFO] cdk-slf4j .......................................... SUCCESS [ 0.087 s] -[INFO] cdk-libiomd ........................................ SUCCESS [ 0.687 s] -[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.485 s] -[INFO] cdk-sdg ............................................ SUCCESS [ 3.837 s] -[INFO] cdk-builder3d ...................................... SUCCESS [ 1.086 s] -[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.071 s] -[INFO] cdk-group .......................................... SUCCESS [ 0.060 s] -[INFO] cdk-pcore .......................................... SUCCESS [ 0.077 s] -[INFO] cdk-structgen ...................................... SUCCESS [ 0.084 s] -[INFO] cdk-model .......................................... SUCCESS [ 0.076 s] -[INFO] cdk-legacy ......................................... SUCCESS [ 12.989 s] -[INFO] cdk-app ............................................ SUCCESS [ 0.001 s] -[INFO] cdk-depict ......................................... SUCCESS [ 2.023 s] +[INFO] cdk ................................................ SUCCESS [ 0.067 s] +[INFO] cdk-base ........................................... SUCCESS [ 0.009 s] +[INFO] cdk-interfaces ..................................... SUCCESS [ 17.202 s] +[INFO] cdk-core ........................................... SUCCESS [ 2.815 s] +[INFO] cdk-standard ....................................... SUCCESS [ 1.110 s] +[INFO] cdk-atomtype ....................................... SUCCESS [ 0.883 s] +[INFO] cdk-valencycheck ................................... SUCCESS [ 0.871 s] +[INFO] cdk-data ........................................... SUCCESS [ 1.041 s] +[INFO] cdk-silent ......................................... SUCCESS [ 1.008 s] +[INFO] cdk-datadebug ...................................... SUCCESS [ 0.837 s] +[INFO] cdk-isomorphism .................................... SUCCESS [ 0.958 s] +[INFO] cdk-dict ........................................... SUCCESS [ 1.012 s] +[INFO] cdk-reaction ....................................... SUCCESS [ 1.235 s] +[INFO] cdk-storage ........................................ SUCCESS [ 0.008 s] +[INFO] cdk-ioformats ...................................... SUCCESS [ 0.814 s] +[INFO] cdk-ctab ........................................... SUCCESS [ 0.559 s] +[INFO] cdk-tool ........................................... SUCCESS [ 0.012 s] +[INFO] cdk-smarts ......................................... SUCCESS [ 0.908 s] +[INFO] cdk-formula ........................................ SUCCESS [ 0.951 s] +[INFO] cdk-descriptor ..................................... SUCCESS [ 0.012 s] +[INFO] cdk-fingerprint .................................... SUCCESS [ 1.609 s] +[INFO] cdk-cip ............................................ SUCCESS [ 0.771 s] +[INFO] cdk-signature ...................................... SUCCESS [ 0.743 s] +[INFO] cdk-qsar ........................................... SUCCESS [ 1.019 s] +[INFO] cdk-charges ........................................ SUCCESS [ 0.957 s] +[INFO] cdk-forcefield ..................................... SUCCESS [ 1.112 s] +[INFO] cdk-qsaratomic ..................................... SUCCESS [ 1.312 s] +[INFO] cdk-qsarbond ....................................... SUCCESS [ 1.033 s] +[INFO] cdk-io ............................................. SUCCESS [02:06 min] +[INFO] cdk-libiocml ....................................... SUCCESS [ 20.992 s] +[INFO] cdk-qsarcml ........................................ SUCCESS [ 8.296 s] +[INFO] cdk-smiles ......................................... SUCCESS [ 1.097 s] +[INFO] cdk-hash ........................................... SUCCESS [ 0.658 s] +[INFO] cdk-fragment ....................................... SUCCESS [ 0.909 s] +[INFO] cdk-qsarmolecular .................................. SUCCESS [ 1.614 s] +[INFO] cdk-pdb ............................................ SUCCESS [ 15.229 s] +[INFO] cdk-qsarprotein .................................... SUCCESS [ 5.632 s] +[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.892 s] +[INFO] cdk-display ........................................ SUCCESS [ 0.007 s] +[INFO] cdk-render ......................................... SUCCESS [ 0.765 s] +[INFO] cdk-renderbasic .................................... SUCCESS [ 1.249 s] +[INFO] cdk-renderawt ...................................... SUCCESS [ 1.094 s] +[INFO] cdk-renderextra .................................... SUCCESS [ 1.236 s] +[INFO] cdk-misc ........................................... SUCCESS [ 0.024 s] +[INFO] cdk-control ........................................ SUCCESS [ 0.448 s] +[INFO] cdk-extra .......................................... SUCCESS [ 43.826 s] +[INFO] cdk-diff ........................................... SUCCESS [ 0.793 s] +[INFO] cdk-log4j .......................................... SUCCESS [ 0.482 s] +[INFO] cdk-slf4j .......................................... SUCCESS [ 0.444 s] +[INFO] cdk-libiomd ........................................ SUCCESS [ 6.766 s] +[INFO] cdk-pdbcml ......................................... SUCCESS [ 4.599 s] +[INFO] cdk-sdg ............................................ SUCCESS [ 40.511 s] +[INFO] cdk-builder3d ...................................... SUCCESS [ 12.943 s] +[INFO] cdk-builder3dtools ................................. SUCCESS [ 1.209 s] +[INFO] cdk-group .......................................... SUCCESS [ 0.988 s] +[INFO] cdk-pcore .......................................... SUCCESS [ 0.910 s] +[INFO] cdk-structgen ...................................... SUCCESS [ 0.753 s] +[INFO] cdk-model .......................................... SUCCESS [ 0.496 s] +[INFO] cdk-legacy ......................................... SUCCESS [02:09 min] +[INFO] cdk-app ............................................ SUCCESS [ 0.004 s] +[INFO] cdk-depict ......................................... SUCCESS [ 21.798 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 46.738 s -[INFO] Finished at: 2023-05-31T01:08:54-12:00 +[INFO] Total time: 08:29 min +[INFO] Finished at: 2023-06-01T03:51:29+14:00 [INFO] ------------------------------------------------------------------------  create-stamp debian/debhelper-build-stamp dh_prep @@ -5610,72 +5653,72 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for cdk 2.8: [INFO] -[INFO] cdk ................................................ SUCCESS [ 1.396 s] -[INFO] cdk-base ........................................... SUCCESS [ 0.177 s] -[INFO] cdk-interfaces ..................................... SUCCESS [ 0.161 s] -[INFO] cdk-core ........................................... SUCCESS [ 0.152 s] -[INFO] cdk-standard ....................................... SUCCESS [ 0.139 s] -[INFO] cdk-atomtype ....................................... SUCCESS [ 0.111 s] -[INFO] cdk-valencycheck ................................... SUCCESS [ 0.108 s] -[INFO] cdk-data ........................................... SUCCESS [ 0.125 s] -[INFO] cdk-silent ......................................... SUCCESS [ 0.117 s] -[INFO] cdk-datadebug ...................................... SUCCESS [ 0.110 s] -[INFO] cdk-isomorphism .................................... SUCCESS [ 0.106 s] -[INFO] cdk-dict ........................................... SUCCESS [ 0.102 s] -[INFO] cdk-reaction ....................................... SUCCESS [ 0.105 s] -[INFO] cdk-storage ........................................ SUCCESS [ 0.078 s] -[INFO] cdk-ioformats ...................................... SUCCESS [ 0.100 s] -[INFO] cdk-ctab ........................................... SUCCESS [ 0.118 s] -[INFO] cdk-tool ........................................... SUCCESS [ 0.076 s] -[INFO] cdk-smarts ......................................... SUCCESS [ 0.094 s] -[INFO] cdk-formula ........................................ SUCCESS [ 0.098 s] -[INFO] cdk-descriptor ..................................... SUCCESS [ 0.086 s] -[INFO] cdk-fingerprint .................................... SUCCESS [ 0.108 s] -[INFO] cdk-cip ............................................ SUCCESS [ 0.101 s] -[INFO] cdk-signature ...................................... SUCCESS [ 0.100 s] -[INFO] cdk-qsar ........................................... SUCCESS [ 0.089 s] -[INFO] cdk-charges ........................................ SUCCESS [ 0.090 s] -[INFO] cdk-forcefield ..................................... SUCCESS [ 0.087 s] -[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.091 s] -[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.101 s] -[INFO] cdk-io ............................................. SUCCESS [ 0.098 s] -[INFO] cdk-libiocml ....................................... SUCCESS [ 0.092 s] -[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.092 s] -[INFO] cdk-smiles ......................................... SUCCESS [ 0.095 s] -[INFO] cdk-hash ........................................... SUCCESS [ 0.087 s] -[INFO] cdk-fragment ....................................... SUCCESS [ 0.086 s] -[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.100 s] -[INFO] cdk-pdb ............................................ SUCCESS [ 0.092 s] -[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.087 s] -[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.083 s] -[INFO] cdk-display ........................................ SUCCESS [ 0.068 s] -[INFO] cdk-render ......................................... SUCCESS [ 0.096 s] -[INFO] cdk-renderbasic .................................... SUCCESS [ 0.089 s] -[INFO] cdk-renderawt ...................................... SUCCESS [ 0.082 s] -[INFO] cdk-renderextra .................................... SUCCESS [ 0.087 s] -[INFO] cdk-misc ........................................... SUCCESS [ 0.073 s] -[INFO] cdk-control ........................................ SUCCESS [ 0.084 s] -[INFO] cdk-extra .......................................... SUCCESS [ 0.087 s] -[INFO] cdk-diff ........................................... SUCCESS [ 0.083 s] -[INFO] cdk-log4j .......................................... SUCCESS [ 0.085 s] -[INFO] cdk-slf4j .......................................... SUCCESS [ 0.090 s] -[INFO] cdk-libiomd ........................................ SUCCESS [ 0.087 s] -[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.084 s] -[INFO] cdk-sdg ............................................ SUCCESS [ 0.086 s] -[INFO] cdk-builder3d ...................................... SUCCESS [ 0.098 s] -[INFO] cdk-builder3dtools ................................. SUCCESS [ 0.087 s] -[INFO] cdk-group .......................................... SUCCESS [ 0.083 s] -[INFO] cdk-pcore .......................................... SUCCESS [ 0.085 s] -[INFO] cdk-structgen ...................................... SUCCESS [ 0.087 s] -[INFO] cdk-model .......................................... SUCCESS [ 0.088 s] -[INFO] cdk-legacy ......................................... SUCCESS [ 0.096 s] -[INFO] cdk-app ............................................ SUCCESS [ 0.067 s] -[INFO] cdk-depict ......................................... SUCCESS [ 0.087 s] +[INFO] cdk ................................................ SUCCESS [ 17.595 s] +[INFO] cdk-base ........................................... SUCCESS [ 2.086 s] +[INFO] cdk-interfaces ..................................... SUCCESS [ 2.038 s] +[INFO] cdk-core ........................................... SUCCESS [ 1.728 s] +[INFO] cdk-standard ....................................... SUCCESS [ 1.727 s] +[INFO] cdk-atomtype ....................................... SUCCESS [ 1.636 s] +[INFO] cdk-valencycheck ................................... SUCCESS [ 1.416 s] +[INFO] cdk-data ........................................... SUCCESS [ 1.321 s] +[INFO] cdk-silent ......................................... SUCCESS [ 1.558 s] +[INFO] cdk-datadebug ...................................... SUCCESS [ 1.580 s] +[INFO] cdk-isomorphism .................................... SUCCESS [ 1.252 s] +[INFO] cdk-dict ........................................... SUCCESS [ 1.167 s] +[INFO] cdk-reaction ....................................... SUCCESS [ 1.268 s] +[INFO] cdk-storage ........................................ SUCCESS [ 0.932 s] +[INFO] cdk-ioformats ...................................... SUCCESS [ 1.151 s] +[INFO] cdk-ctab ........................................... SUCCESS [ 1.368 s] +[INFO] cdk-tool ........................................... SUCCESS [ 0.887 s] +[INFO] cdk-smarts ......................................... SUCCESS [ 1.263 s] +[INFO] cdk-formula ........................................ SUCCESS [ 1.292 s] +[INFO] cdk-descriptor ..................................... SUCCESS [ 0.915 s] +[INFO] cdk-fingerprint .................................... SUCCESS [ 1.263 s] +[INFO] cdk-cip ............................................ SUCCESS [ 1.023 s] +[INFO] cdk-signature ...................................... SUCCESS [ 1.189 s] +[INFO] cdk-qsar ........................................... SUCCESS [ 1.161 s] +[INFO] cdk-charges ........................................ SUCCESS [ 1.193 s] +[INFO] cdk-forcefield ..................................... SUCCESS [ 1.149 s] +[INFO] cdk-qsaratomic ..................................... SUCCESS [ 1.200 s] +[INFO] cdk-qsarbond ....................................... SUCCESS [ 1.147 s] +[INFO] cdk-io ............................................. SUCCESS [ 1.164 s] +[INFO] cdk-libiocml ....................................... SUCCESS [ 1.360 s] +[INFO] cdk-qsarcml ........................................ SUCCESS [ 1.180 s] +[INFO] cdk-smiles ......................................... SUCCESS [ 1.101 s] +[INFO] cdk-hash ........................................... SUCCESS [ 1.083 s] +[INFO] cdk-fragment ....................................... SUCCESS [ 1.270 s] +[INFO] cdk-qsarmolecular .................................. SUCCESS [ 1.401 s] +[INFO] cdk-pdb ............................................ SUCCESS [ 1.386 s] +[INFO] cdk-qsarprotein .................................... SUCCESS [ 1.248 s] +[INFO] cdk-qsarsubstance .................................. SUCCESS [ 1.242 s] +[INFO] cdk-display ........................................ SUCCESS [ 0.953 s] +[INFO] cdk-render ......................................... SUCCESS [ 1.309 s] +[INFO] cdk-renderbasic .................................... SUCCESS [ 1.247 s] +[INFO] cdk-renderawt ...................................... SUCCESS [ 1.188 s] +[INFO] cdk-renderextra .................................... SUCCESS [ 1.228 s] +[INFO] cdk-misc ........................................... SUCCESS [ 0.893 s] +[INFO] cdk-control ........................................ SUCCESS [ 1.027 s] +[INFO] cdk-extra .......................................... SUCCESS [ 1.189 s] +[INFO] cdk-diff ........................................... SUCCESS [ 0.720 s] +[INFO] cdk-log4j .......................................... SUCCESS [ 1.394 s] +[INFO] cdk-slf4j .......................................... SUCCESS [ 1.349 s] +[INFO] cdk-libiomd ........................................ SUCCESS [ 1.388 s] +[INFO] cdk-pdbcml ......................................... SUCCESS [ 1.184 s] +[INFO] cdk-sdg ............................................ SUCCESS [ 1.196 s] +[INFO] cdk-builder3d ...................................... SUCCESS [ 1.341 s] +[INFO] cdk-builder3dtools ................................. SUCCESS [ 1.317 s] +[INFO] cdk-group .......................................... SUCCESS [ 1.097 s] +[INFO] cdk-pcore .......................................... SUCCESS [ 1.171 s] +[INFO] cdk-structgen ...................................... SUCCESS [ 1.294 s] +[INFO] cdk-model .......................................... SUCCESS [ 1.248 s] +[INFO] cdk-legacy ......................................... SUCCESS [ 1.181 s] +[INFO] cdk-app ............................................ SUCCESS [ 0.634 s] +[INFO] cdk-depict ......................................... SUCCESS [ 1.163 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 8.595 s -[INFO] Finished at: 2023-05-31T01:09:06-12:00 +[INFO] Total time: 01:51 min +[INFO] Finished at: 2023-06-01T03:54:11+14:00 [INFO] ------------------------------------------------------------------------  mh_resolve_dependencies --non-interactive --offline --build -plibcdk-java --base-directory=/build/cdk-2.8 --non-explore Analysing pom.xml... @@ -5801,12 +5844,12 @@ > dpkg --search /usr/share/maven-repo/com/googlecode/maven-java-formatter-plugin/maven-java-formatter-plugin/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/com/googlecode/maven-java-formatter-plugin/maven-java-formatter-plugin -May 31, 2023 1:09:20 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Jun 01, 2023 3:55:46 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/cdk-2.8/pom.xml: Dependency not found com.googlecode.maven-java-formatter-plugin:maven-java-formatter-plugin:maven-plugin:0.4 > dpkg --search /usr/share/maven-repo/org/openscience/cdk/cdk-build-utils/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/org/openscience/cdk/cdk-build-utils -May 31, 2023 1:09:25 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Jun 01, 2023 3:55:54 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/cdk-2.8/pom.xml: Dependency not found org.openscience.cdk:cdk-build-utils:jar:debian > dpkg --search /usr/share/maven-repo/jgrapht/jgrapht/*/* Found /usr/share/maven-repo/jgrapht/jgrapht/debian/jgrapht-debian.pom in libjgrapht0.6-java @@ -5815,7 +5858,7 @@ [error] Package libjgrapht0.6-java (0.6.0) is already installed and contains a possible match, but I cannot resolve library jgrapht:jgrapht:jar:debian in it. [error] Please check manually that the library is up to date, otherwise it may be necessary to package version debian in Debian. -May 31, 2023 1:09:39 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Jun 01, 2023 3:56:54 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/cdk-2.8/legacy/pom.xml: Dependency not found jgrapht:jgrapht:jar:debian ERROR: pom.xml: plugin is not packaged in the Maven repository for Debian: com.googlecode.maven-java-formatter-plugin:maven-java-formatter-plugin:0.4 @@ -5846,12 +5889,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19781/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/10868 and its subdirectories -I: Current time: Wed May 31 01:09:57 -12 2023 -I: pbuilder-time-stamp: 1685538597 +I: removing directory /srv/workspace/pbuilder/19781 and its subdirectories +I: Current time: Thu Jun 1 03:59:59 +14 2023 +I: pbuilder-time-stamp: 1685541599