Diff of the two buildlogs: -- --- b1/build.log 2023-05-14 18:30:04.984889888 +0000 +++ b2/build.log 2023-05-14 18:41:48.542254817 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 14 06:23:44 -12 2023 -I: pbuilder-time-stamp: 1684088624 +I: Current time: Mon May 15 08:30:19 +14 2023 +I: pbuilder-time-stamp: 1684089019 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./capsule-nextflow_1.1.1+dfsg.orig.tar.xz] I: copying [./capsule-nextflow_1.1.1+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Nov 6 10:02:27 2022 -12 +gpgv: Signature made Mon Nov 7 12:02:27 2022 +14 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./capsule-nextflow_1.1.1+dfsg-1.dsc: no acceptable signature found @@ -35,135 +35,167 @@ dpkg-source: info: applying skip_tests_touching_security_sensitive_fields.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/19665/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/D01_modify_environment starting +debug: Running on virt32a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 15 08:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='a4582bc7e124459da972e4306c0043d1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='19665' - PS1='# ' - PS2='> ' + INVOCATION_ID=742bfe563ffb48ae88029ce49906b7dd + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20553 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EvsSOfxo/pbuilderrc_XGj5 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EvsSOfxo/b1 --logfile b1/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EvsSOfxo/pbuilderrc_va5F --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EvsSOfxo/b2 --logfile b2/build.log --extrapackages usrmerge capsule-nextflow_1.1.1+dfsg-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux jtx1c 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/19665/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 15 08:31 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -394,7 +426,7 @@ Get: 179 http://deb.debian.org/debian bookworm/main armhf libjacoco-java all 0.8.6-2 [621 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf libjimfs-java all 1.1-6 [191 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf libtruth-java all 0.39-1 [164 kB] -Fetched 325 MB in 29s (11.3 MB/s) +Fetched 325 MB in 44s (7446 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -1319,8 +1351,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1343,7 +1386,7 @@ dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=3 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -1351,18 +1394,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 4.882 secs. -The client will now receive all logging from the daemon (pid: 26154). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-26154.out.log +An attempt to start the daemon took 9.471 secs. +The client will now receive all logging from the daemon (pid: 31397). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-31397.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 3 worker leases. -Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce -Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce -Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1994e68 +Using 4 worker leases. +Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@ec867d +Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@ec867d +Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5c2381 Starting Build Compiling initialization script '/build/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@172f0ae +Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@a37fd7 Compiling initialization script '/build/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/capsule-nextflow-1.1.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/capsule-nextflow-1.1.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1385,22 +1428,22 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1611fe9 +Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@a46398 Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar'] -Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1994e68 -Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@749eeb -Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@ba6cf1 +Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5c2381 +Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@74cf1 +Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7abf2f :capsule:compileJava (Thread[Task worker for ':',5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:compileJava -:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.027 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.026 secs. -Up-to-date check for task ':capsule:compileJava' took 0.092 secs. It is not up-to-date because: +Putting task artifact state for task ':capsule:compileJava' into context took 0.081 secs. +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.083 secs. +Up-to-date check for task ':capsule:compileJava' took 0.16 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileJava' took 0.589 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileJava' took 0.952 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Compiling with JDK Java compiler API. @@ -1421,65 +1464,65 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings -:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 17.746 secs. -:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 31.423 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:processResources' took 0.023 secs. It is not up-to-date because: - No history is available. -:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.148 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) started. -:capsule-util:classes -Skipping task ':capsule-util:classes' as it has no actions. -:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.007 secs. -:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) started. -:capsule-util:debianMavenPom -Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:debianMavenPom' took 0.003 secs. It is not up-to-date because: - No history is available. - Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom -:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) completed. Took 0.792 secs. -:capsule-util:jar (Thread[Daemon worker,5,main]) started. -:capsule-util:jar -Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:jar' took 0.072 secs. It is not up-to-date because: - No history is available. Note: /build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 5 warnings -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 19.13 secs. +Up-to-date check for task ':capsule-util:processResources' took 0.057 secs. It is not up-to-date because: + No history is available. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 31.602 secs. :capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.03 secs. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.025 secs. :capsule:classes (Thread[Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.006 secs. -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.003 secs. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule:debianMavenPom' took 0.004 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:debianMavenPom' took 0.009 secs. It is not up-to-date because: No history is available. +:capsule-util:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.282 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:classes +Skipping task ':capsule-util:classes' as it has no actions. +:capsule-util:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.01 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:debianMavenPom +Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. +Up-to-date check for task ':capsule-util:debianMavenPom' took 0.019 secs. It is not up-to-date because: + No history is available. + Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom Generating pom file /build/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.042 secs. -:capsule:jar (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 1.076 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule:jar' took 0.011 secs. It is not up-to-date because: +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.997 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:jar +Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. +Up-to-date check for task ':capsule:jar' took 0.043 secs. It is not up-to-date because: No history is available. -:capsule-util:jar (Thread[Daemon worker,5,main]) completed. Took 0.516 secs. -:capsule:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.084 secs. +Up-to-date check for task ':capsule-util:jar' took 0.123 secs. It is not up-to-date because: + No history is available. +:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.4 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.635 secs. -BUILD SUCCESSFUL in 51s +BUILD SUCCESSFUL in 1m 33s 7 actionable tasks: 7 executed dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=3 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=4 test openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -1487,17 +1530,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 5.533 secs. -The client will now receive all logging from the daemon (pid: 26475). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-26475.out.log +An attempt to start the daemon took 10.478 secs. +The client will now receive all logging from the daemon (pid: 31936). The daemon log file: /build/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-31936.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 3 worker leases. -Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@18d329 -Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@18d329 -Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@be321d +Using 4 worker leases. +Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@a6857c +Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@a6857c +Creating new cache for fileHashes, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@e74266 Starting Build -Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1065cda +Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d4d511 Settings evaluated using settings file '/build/capsule-nextflow-1.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/capsule-nextflow-1.1.1+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] @@ -1515,60 +1558,60 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3bc5 +Creating new cache for annotation-processors, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@dabb4b Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar', task ':capsule:compileTestJava', task ':capsule:processTestResources', task ':capsule:testClasses', task ':capsule:test', task ':capsule-util:compileTestJava', task ':capsule-util:processTestResources', task ':capsule-util:testClasses', task ':capsule-util:test'] -Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@be321d -Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@11448a0 -Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@18a0d1e +Creating new cache for resourceHashesCache, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@e74266 +Creating new cache for taskHistory, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@49f12a +Creating new cache for outputFiles, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13e1052 :capsule:compileJava (Thread[Task worker for ':',5,main]) started. :capsule-util:compileJava (Thread[Daemon worker,5,main]) started. -:capsule:compileJava :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.02 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.019 secs. -Skipping task ':capsule:compileJava' as it is up-to-date (took 0.207 secs). +:capsule:compileJava +Putting task artifact state for task ':capsule:compileJava' into context took 0.044 secs. +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.051 secs. +Skipping task ':capsule:compileJava' as it is up-to-date (took 0.359 secs). :capsule:compileJava UP-TO-DATE -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.374 secs. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.725 secs. :capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.038 secs. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.062 secs. :capsule:classes (Thread[Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. :capsule:classes UP-TO-DATE -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.004 secs. -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.016 secs. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.015 secs). +Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.023 secs). :capsule:debianMavenPom UP-TO-DATE -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.026 secs. -:capsule:jar (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.06 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Skipping task ':capsule:jar' as it is up-to-date (took 0.025 secs). +Skipping task ':capsule:jar' as it is up-to-date (took 0.072 secs). :capsule:jar UP-TO-DATE -:capsule:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.048 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.119 secs. :capsule:processTestResources (Thread[Task worker for ':',5,main]) started. :capsule:processTestResources Putting task artifact state for task ':capsule:processTestResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule/src/test/resources', not found Skipping task ':capsule:processTestResources' as it has no source files and no previous output files. :capsule:processTestResources NO-SOURCE -:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.014 secs. -Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.568 secs). +:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.03 secs. +Skipping task ':capsule-util:compileJava' as it is up-to-date (took 1.123 secs). :capsule-util:compileJava UP-TO-DATE -:capsule-util:compileJava (Thread[Daemon worker,5,main]) completed. Took 0.695 secs. +:capsule-util:compileJava (Thread[Daemon worker,5,main]) completed. Took 1.451 secs. :capsule-util:processResources (Thread[Daemon worker,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.027 secs). +Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.052 secs). :capsule-util:processResources UP-TO-DATE -:capsule-util:processResources (Thread[Daemon worker,5,main]) completed. Took 0.043 secs. +:capsule-util:processResources (Thread[Daemon worker,5,main]) completed. Took 0.079 secs. :capsule-util:classes (Thread[Daemon worker,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. @@ -1577,22 +1620,22 @@ :capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.02 secs). +Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.039 secs). :capsule-util:debianMavenPom UP-TO-DATE -:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) completed. Took 0.041 secs. +:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) completed. Took 0.064 secs. :capsule-util:jar (Thread[Daemon worker,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Skipping task ':capsule-util:jar' as it is up-to-date (took 0.027 secs). +Skipping task ':capsule-util:jar' as it is up-to-date (took 0.066 secs). :capsule-util:jar UP-TO-DATE -:capsule-util:jar (Thread[Daemon worker,5,main]) completed. Took 0.043 secs. +:capsule-util:jar (Thread[Daemon worker,5,main]) completed. Took 0.106 secs. :capsule:compileTestJava (Thread[Daemon worker,5,main]) started. -:capsule-util:compileTestJava (Thread[Task worker for ':',5,main]) started. -:capsule-util:compileTestJava -Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. :capsule:compileTestJava Putting task artifact state for task ':capsule:compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a836b2 +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:compileTestJava +Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@6a8160 Loading the Maven rules... Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x @@ -1609,19 +1652,20 @@ Passing through org.hamcrest:hamcrest:jar:debian Passing through org.hamcrest:hamcrest:jar:debian Passing through com.google.guava:guava:jar:debian - Passing through com.google.guava:guava-parent:jar:debian Passing through com.google.guava:guava:jar:debian + Passing through com.google.guava:guava-parent:jar:debian + Passing through com.google.guava:guava-parent:jar:debian Passing through org.jsr-305:jsr305:jar:0.x Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian -Up-to-date check for task ':capsule:compileTestJava' took 8.908 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:compileTestJava' took 17.472 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileTestJava' took 9.064 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileTestJava' took 17.6 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. Compiling with JDK Java compiler API. @@ -1632,50 +1676,47 @@ warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 3 warnings -:capsule-util:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 18.639 secs. +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 33.08 secs. :capsule-util:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:processTestResources Putting task artifact state for task ':capsule-util:processTestResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-1.1.1+dfsg/capsule-util/src/test/resources', not found Skipping task ':capsule-util:processTestResources' as it has no source files and no previous output files. :capsule-util:processTestResources NO-SOURCE -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.018 secs. +:capsule-util:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.034 secs. :capsule-util:testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:testClasses Skipping task ':capsule-util:testClasses' as it has no actions. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.002 secs. +:capsule-util:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.014 secs. :capsule-util:test (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:test Putting task artifact state for task ':capsule-util:test' into context took 0.0 secs. Replacing org.jacoco:org.jacoco.agent:jar:0.7.9 -> org.jacoco:org.jacoco.agent:jar:debian Passing through org.jacoco:org.jacoco.build:jar:debian +Up-to-date check for task ':capsule-util:test' took 3.415 secs. It is not up-to-date because: + No history is available. Note: /build/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/TestCapsule.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: /build/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/MyCapsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings -:capsule:compileTestJava (Thread[Daemon worker,5,main]) completed. Took 21.425 secs. +:capsule:compileTestJava (Thread[Daemon worker,5,main]) completed. Took 39.104 secs. :capsule:testClasses (Thread[Task worker for ':',5,main]) started. :capsule:testClasses Skipping task ':capsule:testClasses' as it has no actions. -:capsule:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.018 secs. +:capsule:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. :capsule:test (Thread[Task worker for ':',5,main]) started. :capsule:test Putting task artifact state for task ':capsule:test' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:test' took 2.615 secs. It is not up-to-date because: - No history is available. -Up-to-date check for task ':capsule:test' took 0.169 secs. It is not up-to-date because: - No history is available. -Starting process 'Gradle Test Executor 2'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath17930894929110331998txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' -Starting process 'Gradle Test Executor 1'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath4879854862177124880txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath11109064107833793319txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' +Up-to-date check for task ':capsule:test' took 0.264 secs. It is not up-to-date because: + No history is available. +Starting process 'Gradle Test Executor 2'. Working directory: /build/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_bc1a9505e0683f49c4357991486dc83f/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath3787138323502502107txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 2' -Gradle Test Executor 1 started executing tests. Gradle Test Executor 2 started executing tests. -Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) - -CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED -Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) +Gradle Test Executor 1 started executing tests. +Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) Running test: Test testEmbeddedCaplet(CapsuleTest) CapsuleTest > testEmbeddedCaplet SKIPPED @@ -1787,6 +1828,11 @@ Running test: Test testAgents(CapsuleTest) CapsuleTest > testAgents SKIPPED +Gradle Test Executor 2 finished executing tests. +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release Running test: Test testDelete(CapsuleTest) CapsuleTest > testDelete SKIPPED @@ -1802,17 +1848,17 @@ Running test: Test testApplicationArtifact(CapsuleTest) CapsuleTest > testApplicationArtifact SKIPPED +Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) + +CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED Running test: Test testExtendClasspath(NextflowLoaderTest) Running test: Test testExtendDeps(NextflowLoaderTest) -Gradle Test Executor 2 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.107 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test +Finished generating test XML results (0.147 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test Generating HTML test report... -Finished generating test html results (0.323 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test -:capsule:test (Thread[Task worker for ':',5,main]) completed. Took 14.042 secs. +Finished generating test html results (0.33 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test +:capsule:test (Thread[Task worker for ':',5,main]) completed. Took 24.962 secs. +Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) +Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip4(co.paralleluniverse.capsule.JarTest) @@ -1827,19 +1873,17 @@ Running test: Test testCreateJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory2(co.paralleluniverse.capsule.JarTest) -Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) -Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) -Gradle Test Executor 1 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.009 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test +Gradle Test Executor 1 finished executing tests. +Finished generating test XML results (0.012 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test Generating HTML test report... -Finished generating test html results (0.025 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test -:capsule-util:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 22.535 secs. +Finished generating test html results (0.035 secs) into: /build/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test +:capsule-util:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 38.813 secs. -BUILD SUCCESSFUL in 1m 11s +BUILD SUCCESSFUL in 2m 12s 11 actionable tasks: 4 executed, 7 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -1871,12 +1915,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20553/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/19665 and its subdirectories -I: Current time: Sun May 14 06:29:58 -12 2023 -I: pbuilder-time-stamp: 1684088998 +I: removing directory /srv/workspace/pbuilder/20553 and its subdirectories +I: Current time: Mon May 15 08:41:40 +14 2023 +I: pbuilder-time-stamp: 1684089700