Diff of the two buildlogs: -- --- b1/build.log 2023-04-26 10:53:36.843752214 +0000 +++ b2/build.log 2023-04-26 10:54:56.460220999 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Apr 25 22:52:23 -12 2023 -I: pbuilder-time-stamp: 1682506343 +I: Current time: Wed May 29 07:16:40 +14 2024 +I: pbuilder-time-stamp: 1716916600 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./srf_0.1+dfsg.orig.tar.gz] I: copying [./srf_0.1+dfsg-7.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Nov 25 04:50:21 2020 -12 +gpgv: Signature made Thu Nov 26 06:50:21 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,52 +30,84 @@ dpkg-source: info: applying clang_FTBFS_wrong-main-declaration.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/24857/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 29 07:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='24857' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12382 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ghx3w7mq/pbuilderrc_my5E --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ghx3w7mq/b1 --logfile b1/build.log srf_0.1+dfsg-7.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ghx3w7mq/pbuilderrc_3Ze1 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ghx3w7mq/b2 --logfile b2/build.log --extrapackages usrmerge srf_0.1+dfsg-7.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink12-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 24 02:18 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/24857/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 29 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -164,7 +196,7 @@ Get: 45 http://deb.debian.org/debian bookworm/main arm64 libstaden-read14 arm64 1.14.15-1 [247 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libstaden-read-dev arm64 1.14.15-1 [331 kB] -Fetched 24.7 MB in 1s (21.7 MB/s) +Fetched 24.7 MB in 1s (39.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -366,8 +398,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/srf-0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../srf_0.1+dfsg-7_source.changes +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/srf-0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../srf_0.1+dfsg-7_source.changes dpkg-buildpackage: info: source package srf dpkg-buildpackage: info: source version 0.1+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -516,37 +557,37 @@ g++ -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SRF_ReadSet.o SRF_ReadSet.cc g++ -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SRF_util.o SRF_util.cc g++ -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SRF_Ztr.o SRF_Ztr.cc -In file included from ./SRF_File.hh:29, - from SRF_File.cc:19: +In file included from SRF_ReadSet.cc:22: ./SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ +SRF_ReadSet.cc: In member function 'bool SRF_ReadSet::write(std::fstream&, const std::vector&, const std::vector >&)': +SRF_ReadSet.cc:172:1: warning: no return statement in function returning non-void [-Wreturn-type] + 172 | } + | ^ +SRF_Ztr.cc: In function 'int SRF_writeZtr(const ztr_t*, std::fstream&)': +SRF_Ztr.cc:288:1: warning: no return statement in function returning non-void [-Wreturn-type] + 288 | } + | ^ In file included from SRF_Container.cc:20: ./SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ +SRF_Container.cc: In member function 'bool SRF_Container::write(std::fstream&)': +SRF_Container.cc:173:1: warning: no return statement in function returning non-void [-Wreturn-type] + 173 | } + | ^ In file included from ./SRF_File.hh:29, - from SRF_util.cc:38: + from SRF_File.cc:19: ./SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ -In file included from SRF_ReadSet.cc:22: +In file included from SRF_Read.cc:25: ./SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ -SRF_Container.cc: In member function 'bool SRF_Container::write(std::fstream&)': -SRF_Container.cc:173:1: warning: no return statement in function returning non-void [-Wreturn-type] - 173 | } - | ^ -SRF_Ztr.cc: In function 'int SRF_writeZtr(const ztr_t*, std::fstream&)': -SRF_Ztr.cc:288:1: warning: no return statement in function returning non-void [-Wreturn-type] - 288 | } - | ^ -SRF_ReadSet.cc: In member function 'bool SRF_ReadSet::write(std::fstream&, const std::vector&, const std::vector >&)': -SRF_ReadSet.cc:172:1: warning: no return statement in function returning non-void [-Wreturn-type] - 172 | } - | ^ -In file included from SRF_Read.cc:25: +In file included from ./SRF_File.hh:29, + from SRF_util.cc:38: ./SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ @@ -565,7 +606,7 @@ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o testWrite.o testWrite.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o testWriteFastaq.o testWriteFastaq.cc g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o testWriteSFF.o testWriteSFF.cc -In file included from testWriteSFF.cc:8: +In file included from testWriteFastaq.cc:8: ../src/SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ @@ -573,7 +614,7 @@ ../src/SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ -In file included from testWriteFastaq.cc:8: +In file included from testWriteSFF.cc:8: ../src/SRF_util.hh:40:1: warning: 'typedef' was ignored in this declaration 40 | typedef struct SRF_BasePrb | ^~~~~~~ @@ -584,8 +625,8 @@ | ^~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -o testRead testRead.o ../src/libsrf.a -L/usr/lib -lstdc++ -lz -lcurl -lstaden-read -lm g++ -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -o testWriteSFF testWriteSFF.o ../src/libsrf.a -L/usr/lib -lstdc++ -lz -lcurl -lstaden-read -lm -g++ -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -o testWrite testWrite.o ../src/libsrf.a -L/usr/lib -lstdc++ -lz -lcurl -lstaden-read -lm g++ -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -o testWriteFastaq testWriteFastaq.o ../src/libsrf.a -L/usr/lib -lstdc++ -lz -lcurl -lstaden-read -lm +g++ -g -O2 -ffile-prefix-map=/build/srf-0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -o testWrite testWrite.o ../src/libsrf.a -L/usr/lib -lstdc++ -lz -lcurl -lstaden-read -lm make[3]: Leaving directory '/build/srf-0.1+dfsg/test' make[3]: Entering directory '/build/srf-0.1+dfsg' make[3]: Leaving directory '/build/srf-0.1+dfsg' @@ -658,8 +699,8 @@ dpkg-gencontrol: warning: Depends field of package libsrf-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'srf-doc' in '../srf-doc_0.1+dfsg-7_all.deb'. dpkg-deb: building package 'libsrf-dev' in '../libsrf-dev_0.1+dfsg-7_arm64.deb'. +dpkg-deb: building package 'srf-doc' in '../srf-doc_0.1+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../srf_0.1+dfsg-7_arm64.buildinfo dpkg-genchanges --build=binary -O../srf_0.1+dfsg-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -667,12 +708,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12382/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/24857 and its subdirectories -I: Current time: Tue Apr 25 22:53:35 -12 2023 -I: pbuilder-time-stamp: 1682506415 +I: removing directory /srv/workspace/pbuilder/12382 and its subdirectories +I: Current time: Wed May 29 07:17:55 +14 2024 +I: pbuilder-time-stamp: 1716916675