Diff of the two buildlogs: -- --- b1/build.log 2023-04-14 03:27:28.265291670 +0000 +++ b2/build.log 2023-04-14 03:28:49.381689344 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 15 21:49:15 -12 2024 -I: pbuilder-time-stamp: 1715852955 +I: Current time: Fri Apr 14 17:27:31 +14 2023 +I: pbuilder-time-stamp: 1681442851 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./r-bioc-makecdfenv_1.74.0.orig.tar.gz] I: copying [./r-bioc-makecdfenv_1.74.0-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Nov 20 18:31:01 2022 -12 +gpgv: Signature made Mon Nov 21 20:31:01 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -29,11 +29,20 @@ dpkg-source: info: applying fix_cflags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/17803/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/D01_modify_environment starting +debug: Running on codethink16-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -43,38 +52,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='17803' + PPID='16772' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z6chMTUe/pbuilderrc_UR0i --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z6chMTUe/b1 --logfile b1/build.log r-bioc-makecdfenv_1.74.0-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z6chMTUe/pbuilderrc_n1Rs --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z6chMTUe/b2 --logfile b2/build.log --extrapackages usrmerge r-bioc-makecdfenv_1.74.0-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink11-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 15 05:13 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/17803/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 12 00:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -306,7 +315,7 @@ Get: 182 http://deb.debian.org/debian bookworm/main arm64 r-cran-biocmanager all 1.30.20+dfsg-1 [126 kB] Get: 183 http://deb.debian.org/debian bookworm/main arm64 r-bioc-preprocesscore arm64 1.60.2+ds-1 [141 kB] Get: 184 http://deb.debian.org/debian bookworm/main arm64 r-bioc-affy arm64 1.76.0-1 [1332 kB] -Fetched 96.9 MB in 2s (48.8 MB/s) +Fetched 96.9 MB in 2s (55.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1079,8 +1088,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/r-bioc-makecdfenv-1.74.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-makecdfenv_1.74.0-1_source.changes +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/r-bioc-makecdfenv-1.74.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-makecdfenv_1.74.0-1_source.changes dpkg-buildpackage: info: source package r-bioc-makecdfenv dpkg-buildpackage: info: source version 1.74.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1172,8 +1190,8 @@ dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R -dpkg-deb: building package 'r-bioc-makecdfenv-dbgsym' in '../r-bioc-makecdfenv-dbgsym_1.74.0-1_arm64.deb'. dpkg-deb: building package 'r-bioc-makecdfenv' in '../r-bioc-makecdfenv_1.74.0-1_arm64.deb'. +dpkg-deb: building package 'r-bioc-makecdfenv-dbgsym' in '../r-bioc-makecdfenv-dbgsym_1.74.0-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-makecdfenv_1.74.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-makecdfenv_1.74.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1181,12 +1199,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/16772/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/17803 and its subdirectories -I: Current time: Wed May 15 21:50:27 -12 2024 -I: pbuilder-time-stamp: 1715853027 +I: removing directory /srv/workspace/pbuilder/16772 and its subdirectories +I: Current time: Fri Apr 14 17:28:48 +14 2023 +I: pbuilder-time-stamp: 1681442928