Diff of the two buildlogs: -- --- b1/build.log 2023-04-27 22:56:08.947841754 +0000 +++ b2/build.log 2023-04-27 22:57:44.951585885 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 27 10:54:26 -12 2023 -I: pbuilder-time-stamp: 1682636066 +I: Current time: Thu May 30 19:19:12 +14 2024 +I: pbuilder-time-stamp: 1717046352 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./q2-sample-classifier_2022.11.1.orig.tar.gz] I: copying [./q2-sample-classifier_2022.11.1-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Fri Feb 3 09:01:14 2023 -12 +gpgv: Signature made Sat Feb 4 11:01:14 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -31,52 +31,84 @@ dpkg-source: info: applying sklearn-1.2.1.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18846/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 30 19:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18846' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=5380 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZLidcLS6/pbuilderrc_umyB --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZLidcLS6/b1 --logfile b1/build.log q2-sample-classifier_2022.11.1-3.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZLidcLS6/pbuilderrc_8CPY --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZLidcLS6/b2 --logfile b2/build.log --extrapackages usrmerge q2-sample-classifier_2022.11.1-3.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink14-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 24 22:27 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/18846/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 29 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -202,7 +234,7 @@ Get: 78 http://deb.debian.org/debian bookworm/main arm64 python3-tzlocal all 4.2-1 [24.6 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-yaml arm64 6.0-3+b2 [108 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 qiime all 2022.11.1-2 [183 kB] -Fetched 41.5 MB in 2s (26.2 MB/s) +Fetched 41.5 MB in 1s (55.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -542,8 +574,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/q2-sample-classifier-2022.11.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../q2-sample-classifier_2022.11.1-3_source.changes +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/q2-sample-classifier-2022.11.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../q2-sample-classifier_2022.11.1-3_source.changes dpkg-buildpackage: info: source package q2-sample-classifier dpkg-buildpackage: info: source version 2022.11.1-3 dpkg-buildpackage: info: source distribution unstable @@ -553,7 +594,7 @@ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt binnengegaan dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean @@ -563,7 +604,7 @@ rm -rf .pytest_cache build rm -f q2_sample_classifier.egg-info/PKG-INFO q2_sample_classifier.egg-info/SOURCES.txt q2_sample_classifier.egg-info/dependency_links.txt q2_sample_classifier.egg-info/entry_points.txt q2_sample_classifier.egg-info/not-zip-safe q2_sample_classifier.egg-info/top_level.txt find . -name __pycache__ | xargs -r rm -r -make[1]: Leaving directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt verlaten dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary @@ -620,15 +661,15 @@ UPDATING /build/q2-sample-classifier-2022.11.1/.pybuild/cpython3_3.11/build/q2_sample_classifier/_version.py set /build/q2-sample-classifier-2022.11.1/.pybuild/cpython3_3.11/build/q2_sample_classifier/_version.py to '2022.11.1' debian/rules override_dh_auto_test -make[1]: Entering directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt binnengegaan echo "I: Delaying true testing to autopkgtests since QIIME2 module cannot be registered at build time" I: Delaying true testing to autopkgtests since QIIME2 module cannot be registered at build time -make[1]: Leaving directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt verlaten create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install -make[1]: Entering directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt binnengegaan dh_auto_install I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/q2-sample-classifier-2022.11.1/debian/q2-sample-classifier running install @@ -717,16 +758,16 @@ running install_scripts rm -rf debian/q2-sample-classifier/usr/lib/python3.9/site-packages/q2_sample_classifier/__pycache__/ rm -rf debian/q2-sample-classifier/usr/lib/python3.9/site-packages/q2_sample_classifier/tests/__pycache__/ -make[1]: Leaving directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt verlaten dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild debian/rules override_dh_usrlocal -make[1]: Entering directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt binnengegaan # fails - no idea why -make[1]: Leaving directory '/build/q2-sample-classifier-2022.11.1' +make[1]: Map '/build/q2-sample-classifier-2022.11.1' wordt verlaten dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild @@ -737,7 +778,7 @@ dpkg-gencontrol: warning: Depends field of package q2-sample-classifier: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'q2-sample-classifier' in '../q2-sample-classifier_2022.11.1-3_all.deb'. +dpkg-deb: pakket 'q2-sample-classifier' wordt gebouwd in '../q2-sample-classifier_2022.11.1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../q2-sample-classifier_2022.11.1-3_arm64.buildinfo dpkg-genchanges --build=binary -O../q2-sample-classifier_2022.11.1-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -745,12 +786,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5380/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18846 and its subdirectories -I: Current time: Thu Apr 27 10:56:08 -12 2023 -I: pbuilder-time-stamp: 1682636168 +I: removing directory /srv/workspace/pbuilder/5380 and its subdirectories +I: Current time: Thu May 30 19:20:44 +14 2024 +I: pbuilder-time-stamp: 1717046444