Diff of the two buildlogs: -- --- b1/build.log 2023-04-13 01:04:15.285356426 +0000 +++ b2/build.log 2023-04-13 01:08:11.830862393 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 12 12:59:08 -12 2023 -I: pbuilder-time-stamp: 1681347548 +I: Current time: Wed May 15 21:27:18 +14 2024 +I: pbuilder-time-stamp: 1715758038 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./python-biom-format_2.1.12.orig.tar.xz] I: copying [./python-biom-format_2.1.12-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Dec 3 07:19:18 2022 -12 +gpgv: Signature made Sun Dec 4 09:19:18 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key @@ -34,11 +34,20 @@ dpkg-source: info: applying posix_shell.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4612/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -48,38 +57,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='4612' + PPID='16688' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.e7fqxiOC/pbuilderrc_2VGP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.e7fqxiOC/b1 --logfile b1/build.log python-biom-format_2.1.12-3.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.e7fqxiOC/pbuilderrc_YBPe --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.e7fqxiOC/b2 --logfile b2/build.log --extrapackages usrmerge python-biom-format_2.1.12-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink10-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 10 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4612/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 15 06:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -349,7 +358,7 @@ Get: 200 http://deb.debian.org/debian bookworm/main arm64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 201 http://deb.debian.org/debian bookworm/main arm64 sphinx-common all 5.3.0-4 [653 kB] Get: 202 http://deb.debian.org/debian bookworm/main arm64 python3-sphinx all 5.3.0-4 [549 kB] -Fetched 133 MB in 5s (25.0 MB/s) +Fetched 133 MB in 2s (59.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1196,8 +1205,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-biom-format-2.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biom-format_2.1.12-3_source.changes +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/python-biom-format-2.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-biom-format_2.1.12-3_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.12-3 dpkg-buildpackage: info: source distribution unstable @@ -1270,7 +1288,7 @@ [3/3] Cythonizing biom/_transform.pyx running config debian/rules override_dh_auto_build -make[1]: Entering directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt binnengegaan # arch USE_CYTHON=true dh_auto_build pybuild --build -i python{version} -p 3.11 @@ -1584,12 +1602,12 @@ [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst Failed to import biom. Possible hints: -* KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' +* KeyError: 'biom' Failed to import biom.table. Possible hints: -* KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' +* KeyError: 'biom' building [mo]: targets for 0 po files that are out of date building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed @@ -1681,7 +1699,7 @@ build succeeded, 2 warnings. The manual pages are in build/man. -make[1]: Leaving directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt verlaten dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.11 I: pybuild pybuild:307: cp -r /build/python-biom-format-2.1.12/examples /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build @@ -1781,8 +1799,8 @@ lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================= 359 passed, 7 skipped, 46 warnings in 21.46s ================= - rm -fr -- /tmp/dh-xdg-rundir-Hc4bLHZv +================= 359 passed, 7 skipped, 46 warnings in 15.98s ================= + rm -fr -- /tmp/dh-xdg-rundir-3Hrq8K4k create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1790,7 +1808,7 @@ rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install -make[1]: Entering directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt binnengegaan dh_auto_install install -m0755 -d /build/python-biom-format-2.1.12/debian/tmp pybuild --install -i python{version} -p 3.11 --dest-dir /build/python-biom-format-2.1.12/debian/tmp @@ -2154,10 +2172,10 @@ mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars find debian/python3-biom-format -name .coverage -delete -make[1]: Leaving directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt verlaten rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep -make[1]: Entering directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt binnengegaan dh_installdocs --indep dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc @@ -2168,14 +2186,14 @@ install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep -dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js - ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js - ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js - ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js - ln -sf ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js + ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js + ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js +dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js + ln -sf ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js + ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars @@ -2183,7 +2201,7 @@ mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars -make[1]: Leaving directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt verlaten dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format @@ -2194,15 +2212,15 @@ dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild - install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format - install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian - install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog + install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format + install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian + install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples -make[1]: Entering directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt binnengegaan dh_installexamples install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples @@ -2219,7 +2237,7 @@ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi -make[1]: Leaving directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt verlaten dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/man/man1/ install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1 @@ -2258,50 +2276,50 @@ D: dh_python3 pydist:173: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps -D: dh_python3 depends:281: D={'python3-numpy', 'python3-scipy', 'cython3', 'python3-pandas', 'python3:any', 'python3-h5py', 'python3-click', 'python3 (>= 3.11~)', 'python3 (<< 3.12)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:281: D={'python3 (<< 3.12)', 'python3:any', 'cython3', 'python3-scipy', 'python3-pandas', 'python3-click', 'python3-numpy', 'python3-h5py', 'python3 (>= 3.11~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biom-format-doc.lintian-overrides debian/python-biom-format-doc/usr/share/lintian/overrides/python-biom-format-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild - rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js - ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js - rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js - ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js - rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js - ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js - rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js - ln -s ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js + rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js + ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js + rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js + ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js + rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js + ln -s ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js + rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js + ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1670091303 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc + chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian + gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian - chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 cd '/build/python-biom-format-2.1.12' - gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 cd '/build/python-biom-format-2.1.12' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms -make[1]: Entering directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt binnengegaan dh_fixperms find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s @@ -2316,7 +2334,7 @@ find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; -make[1]: Leaving directory '/build/python-biom-format-2.1.12' +make[1]: Map '/build/python-biom-format-2.1.12' wordt verlaten dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu @@ -2324,11 +2342,6 @@ objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug dh_strip -a -O--buildsystem=pybuild - install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3 - objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/b8a59410aef9f118f80f34166418237774cd7a.debug - chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/b8a59410aef9f118f80f34166418237774cd7a.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/b8a59410aef9f118f80f34166418237774cd7a.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/c0 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/c0/776456d2839babc918f5c85b7ad09f1eb4f985.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/c0/776456d2839babc918f5c85b7ad09f1eb4f985.debug @@ -2339,6 +2352,11 @@ chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/1d/d499d2635b7e5e79ff92aedb14c9998290b0e2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/1d/d499d2635b7e5e79ff92aedb14c9998290b0e2.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-aarch64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3 + objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/b8a59410aef9f118f80f34166418237774cd7a.debug + chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/b8a59410aef9f118f80f34166418237774cd7a.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/b8a59410aef9f118f80f34166418237774cd7a.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biom-format/usr/lib/debug/.dwz @@ -2350,7 +2368,7 @@ rm -f debian/python3-biom-format/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN - dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-aarch64-linux-gnu.so + dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-aarch64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst @@ -2361,38 +2379,38 @@ chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild + install -m0755 -d debian/python-biom-format-doc/DEBIAN + echo misc:Depends= >> debian/python-biom-format-doc.substvars + echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars + dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -Pdebian/python-biom-format-doc install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=1dd499d2635b7e5e79ff92aedb14c9998290b0e2 c0776456d2839babc918f5c85b7ad09f1eb4f985 d3b8a59410aef9f118f80f34166418237774cd7a" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/python-biom-format-doc/DEBIAN - echo misc:Depends= >> debian/python-biom-format-doc.substvars - echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars - dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -Pdebian/python-biom-format-doc +dpkg-gencontrol: waarschuwing: pakket python-biom-format-doc: substitutievariabele ${python3:Depends} ongebruikt, maar is gedefinieerd +dpkg-gencontrol: waarschuwing: pakket python-biom-format-doc: substitutievariabele ${sphinxdoc:Built-Using} ongebruikt, maar is gedefinieerd + chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format -dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined -dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined - chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild + install -m0755 -d debian/python-biom-format-doc/DEBIAN install -m0755 -d debian/python3-biom-format/DEBIAN cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - install -m0755 -d debian/python-biom-format-doc/DEBIAN + cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN - cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biom-format .. - dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root .. -dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.12-3_all.deb'. -dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.12-3_arm64.deb'. -dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.12-3_arm64.deb'. + dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. +dpkg-deb: pakket 'python3-biom-format' wordt gebouwd in '../python3-biom-format_2.1.12-3_arm64.deb'. +dpkg-deb: pakket 'python3-biom-format-dbgsym' wordt gebouwd in '../python3-biom-format-dbgsym_2.1.12-3_arm64.deb'. +dpkg-deb: pakket 'python-biom-format-doc' wordt gebouwd in '../python-biom-format-doc_2.1.12-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.12-3_arm64.buildinfo dpkg-genchanges --build=binary -O../python-biom-format_2.1.12-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2400,12 +2418,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/16688/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4612 and its subdirectories -I: Current time: Wed Apr 12 13:04:14 -12 2023 -I: pbuilder-time-stamp: 1681347854 +I: removing directory /srv/workspace/pbuilder/16688 and its subdirectories +I: Current time: Wed May 15 21:31:10 +14 2024 +I: pbuilder-time-stamp: 1715758270