Diff of the two buildlogs: -- --- b1/build.log 2023-04-08 12:05:46.888063095 +0000 +++ b2/build.log 2023-04-08 12:07:28.280690313 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 10 06:27:09 -12 2024 -I: pbuilder-time-stamp: 1715365629 +I: Current time: Sun Apr 9 02:05:51 +14 2023 +I: pbuilder-time-stamp: 1680955551 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./nim-hts_0.3.19+ds.orig.tar.xz] I: copying [./nim-hts_0.3.19+ds-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Oct 18 21:36:07 2021 -12 +gpgv: Signature made Tue Oct 19 23:36:07 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key @@ -30,11 +30,20 @@ dpkg-source: info: applying fix-version-comparision.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/22932/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/D01_modify_environment starting +debug: Running on codethink14-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -44,38 +53,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='22932' + PPID='13271' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ul6y6S33/pbuilderrc_9doP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ul6y6S33/b1 --logfile b1/build.log nim-hts_0.3.19+ds-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ul6y6S33/pbuilderrc_NZZx --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ul6y6S33/b2 --logfile b2/build.log --extrapackages usrmerge nim-hts_0.3.19+ds-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink13-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 10 04:48 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/22932/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 8 00:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -174,7 +183,7 @@ Get: 51 http://deb.debian.org/debian bookworm/main arm64 nim arm64 1.6.10-2 [3827 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 samtools arm64 1.16.1-1 [580 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 tabix arm64 1.16+ds-3 [427 kB] -Fetched 29.2 MB in 3s (8468 kB/s) +Fetched 29.2 MB in 1s (41.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -400,8 +409,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/nim-hts-0.3.19+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.19+ds-1_source.changes +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/nim-hts-0.3.19+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nim-hts_0.3.19+ds-1_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.19+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -549,7 +567,7 @@ CC: all.nim Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) -83691 lines; 23.050s; 144.766MiB peakmem; proj: /build/nim-hts-0.3.19+ds/tests/all.nim; out: /build/nim-hts-0.3.19+ds/tests/all [SuccessX] +83691 lines; 25.219s; 144.801MiB peakmem; proj: /build/nim-hts-0.3.19+ds/tests/all.nim; out: /build/nim-hts-0.3.19+ds/tests/all [SuccessX] tests/all [Suite] flag test-suite @@ -623,7 +641,7 @@ [OK] re-use same header issue 77 [Suite] speed tests -312078 in .. 16.94842538 seconds +312078 in .. 16.57242374 seconds [OK] standard format getter [Suite] bam-suite @@ -679,42 +697,42 @@ cd debian/nim-hts-dev cd debian/nim-hts-examples chmod a-x usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian - chmod a-x usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim gzip -9nf usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian - gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim cd '/build/nim-hts-0.3.19+ds' + chmod a-x usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim + gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/newsample.vcf usr/share/doc/nim-hts-examples/outmissing.vcf usr/share/doc/nim-hts-examples/outz.vcf usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim cd '/build/nim-hts-0.3.19+ds' dh_fixperms find debian/nim-hts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/nim-hts-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/nim-hts-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/nim-hts-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/nim-hts-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_installdeb install -m0755 -d debian/nim-hts-dev/DEBIAN install -m0755 -d debian/nim-hts-examples/DEBIAN dh_gencontrol - install -m0755 -d debian/nim-hts-dev/DEBIAN - echo misc:Depends= >> debian/nim-hts-dev.substvars - echo misc:Pre-Depends= >> debian/nim-hts-dev.substvars - dpkg-gencontrol -pnim-hts-dev -ldebian/changelog -Tdebian/nim-hts-dev.substvars -Pdebian/nim-hts-dev install -m0755 -d debian/nim-hts-examples/DEBIAN echo misc:Depends= >> debian/nim-hts-examples.substvars echo misc:Pre-Depends= >> debian/nim-hts-examples.substvars dpkg-gencontrol -pnim-hts-examples -ldebian/changelog -Tdebian/nim-hts-examples.substvars -Pdebian/nim-hts-examples + install -m0755 -d debian/nim-hts-dev/DEBIAN + echo misc:Depends= >> debian/nim-hts-dev.substvars + echo misc:Pre-Depends= >> debian/nim-hts-dev.substvars + dpkg-gencontrol -pnim-hts-dev -ldebian/changelog -Tdebian/nim-hts-dev.substvars -Pdebian/nim-hts-dev chmod 0644 -- debian/nim-hts-dev/DEBIAN/control chmod 0644 -- debian/nim-hts-examples/DEBIAN/control dh_md5sums - install -m0755 -d debian/nim-hts-dev/DEBIAN - cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/nim-hts-examples/DEBIAN + install -m0755 -d debian/nim-hts-dev/DEBIAN cd debian/nim-hts-examples >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/nim-hts-dev/DEBIAN/md5sums + cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/nim-hts-examples/DEBIAN/md5sums + chmod 0644 -- debian/nim-hts-dev/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/nim-hts-dev .. dpkg-deb --root-owner-group --build debian/nim-hts-examples .. @@ -727,12 +745,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13271/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/22932 and its subdirectories -I: Current time: Fri May 10 06:28:45 -12 2024 -I: pbuilder-time-stamp: 1715365725 +I: removing directory /srv/workspace/pbuilder/13271 and its subdirectories +I: Current time: Sun Apr 9 02:07:27 +14 2023 +I: pbuilder-time-stamp: 1680955647