Diff of the two buildlogs: -- --- b1/build.log 2023-04-15 01:35:14.811257158 +0000 +++ b2/build.log 2023-04-15 01:51:34.191782450 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Apr 14 13:22:15 -12 2023 -I: pbuilder-time-stamp: 1681521735 +I: Current time: Fri May 17 21:58:19 +14 2024 +I: pbuilder-time-stamp: 1715932699 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./ncbi-vdb_3.0.2+dfsg.orig.tar.xz] I: copying [./ncbi-vdb_3.0.2+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Fri Jan 20 10:43:43 2023 -12 +gpgv: Signature made Sat Jan 21 12:43:43 2023 +14 gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ncbi-vdb_3.0.2+dfsg-2.dsc: no acceptable signature found @@ -34,11 +34,20 @@ dpkg-source: info: applying fix_x32.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/8405/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -48,38 +57,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='8405' + PPID='22904' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UVb3hyqy/pbuilderrc_rL7P --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UVb3hyqy/b1 --logfile b1/build.log ncbi-vdb_3.0.2+dfsg-2.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UVb3hyqy/pbuilderrc_iAuJ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UVb3hyqy/b2 --logfile b2/build.log --extrapackages usrmerge ncbi-vdb_3.0.2+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 12 22:50 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/8405/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 17 09:10 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -286,7 +295,7 @@ Get: 141 http://deb.debian.org/debian bookworm/main arm64 libxml2-dev arm64 2.9.14+dfsg-1.1+b3 [740 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 libzstd-dev arm64 1.5.4+dfsg2-5 [317 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] -Fetched 115 MB in 2s (50.3 MB/s) +Fetched 115 MB in 3s (43.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -879,8 +888,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ncbi-vdb-3.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-vdb_3.0.2+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/ncbi-vdb-3.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-vdb_3.0.2+dfsg-2_source.changes dpkg-buildpackage: info: source package ncbi-vdb dpkg-buildpackage: info: source version 3.0.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -5580,34 +5598,34 @@ dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake -dpkg-shlibdeps: warning: symbol KThreadDetach used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries -dpkg-shlibdeps: warning: symbol KQueuePush used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries -dpkg-shlibdeps: warning: symbol KFileSize_v1 used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries -dpkg-shlibdeps: warning: symbol KLockMake used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries +dpkg-shlibdeps: warning: symbol KThreadRelease used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries +dpkg-shlibdeps: warning: symbol VectorAppend used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol VectorInit used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries -dpkg-shlibdeps: warning: symbol TimeoutInit used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries +dpkg-shlibdeps: warning: symbol KQueuePop used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol KLockAcquire used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries +dpkg-shlibdeps: warning: symbol KFileSize_v1 used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflate used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol VectorGet used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries -dpkg-shlibdeps: warning: symbol KQueueRelease used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries -dpkg-shlibdeps: warning: symbol KQueuePop used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries +dpkg-shlibdeps: warning: symbol KQueueMake used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries +dpkg-shlibdeps: warning: symbol VectorCopy used by debian/libsam-extract3/usr/lib/aarch64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake -dpkg-gencontrol: warning: Depends field of package libncbi-vdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libsam-extract-dev: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: Depends field of package libncbi-vdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libncbi-wvdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libncbi-wvdb-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package libncbi-vdb-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake +dpkg-deb: building package 'libncbi-wvdb-dev' in '../libncbi-wvdb-dev_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libncbi-vdb-dev' in '../libncbi-vdb-dev_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libncbi-vdb3' in '../libncbi-vdb3_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libncbi-wvdb3' in '../libncbi-wvdb3_3.0.2+dfsg-2_arm64.deb'. -dpkg-deb: building package 'libncbi-wvdb-dev' in '../libncbi-wvdb-dev_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libsam-extract3-dbgsym' in '../libsam-extract3-dbgsym_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libsam-extract-dev' in '../libsam-extract-dev_3.0.2+dfsg-2_arm64.deb'. -dpkg-deb: building package 'libncbi-vdb3-dbgsym' in '../libncbi-vdb3-dbgsym_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libncbi-wvdb3-dbgsym' in '../libncbi-wvdb3-dbgsym_3.0.2+dfsg-2_arm64.deb'. +dpkg-deb: building package 'libncbi-vdb3-dbgsym' in '../libncbi-vdb3-dbgsym_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libsam-extract3' in '../libsam-extract3_3.0.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'ncbi-vdb-data' in '../ncbi-vdb-data_3.0.2+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-vdb_3.0.2+dfsg-2_arm64.buildinfo @@ -5617,12 +5635,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22904/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/8405 and its subdirectories -I: Current time: Fri Apr 14 13:35:13 -12 2023 -I: pbuilder-time-stamp: 1681522513 +I: removing directory /srv/workspace/pbuilder/22904 and its subdirectories +I: Current time: Fri May 17 22:14:32 +14 2024 +I: pbuilder-time-stamp: 1715933672