Diff of the two buildlogs: -- --- b1/build.log 2023-05-20 02:28:39.851675883 +0000 +++ b2/build.log 2023-05-20 03:09:13.516850915 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 19 13:49:06 -12 2023 -I: pbuilder-time-stamp: 1684547346 +I: Current time: Fri Jun 21 22:51:44 +14 2024 +I: pbuilder-time-stamp: 1718959904 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./meep-openmpi_1.25.0.orig.tar.gz] I: copying [./meep-openmpi_1.25.0-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed May 10 05:37:28 2023 -12 +gpgv: Signature made Thu May 11 07:37:28 2023 +14 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key @@ -28,52 +28,84 @@ dpkg-source: info: applying i386-fix.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3580/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 21 22:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3580' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=29919 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6KlyuIrS/pbuilderrc_7OQv --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6KlyuIrS/b1 --logfile b1/build.log meep-openmpi_1.25.0-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6KlyuIrS/pbuilderrc_ulHo --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6KlyuIrS/b2 --logfile b2/build.log --extrapackages usrmerge meep-openmpi_1.25.0-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink10-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 16 22:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3580/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 20 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -319,7 +351,7 @@ Get: 170 http://deb.debian.org/debian bookworm/main arm64 quilt all 0.67+really0.66-1 [303 kB] Get: 171 http://deb.debian.org/debian bookworm/main arm64 swig4.0 arm64 4.1.0-0.2 [1299 kB] Get: 172 http://deb.debian.org/debian bookworm/main arm64 swig all 4.1.0-0.2 [321 kB] -Fetched 91.2 MB in 3s (27.0 MB/s) +Fetched 91.2 MB in 4s (24.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1042,10 +1074,15 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/meep-openmpi-1.25.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../meep-openmpi_1.25.0-2_source.changes +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/meep-openmpi-1.25.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../meep-openmpi_1.25.0-2_source.changes dpkg-buildpackage: info: source package meep-openmpi dpkg-buildpackage: info: source version 1.25.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1311,11 +1348,11 @@ Making all in src make[3]: Entering directory '/build/meep-openmpi-1.25.0/src' make sphere_quad -(echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/build/meep-openmpi-1.25.0/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. +(echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-openmpi-1.25.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h @@ -1323,36 +1360,34 @@ make[4]: Entering directory '/build/meep-openmpi-1.25.0/src' Making all in support make[5]: Entering directory '/build/meep-openmpi-1.25.0/src/support' -/bin/bash ../../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937ar.lo mt19937ar.c +/bin/sh ../../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937ar.lo mt19937ar.c libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o .libs/mt19937ar.o libtool: compile: aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o mt19937ar.o >/dev/null 2>&1 -/bin/bash ../../libtool --tag=CC --mode=link aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../../libtool --tag=CC --mode=link aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-ar cr .libs/libsupport.a .libs/mt19937ar.o libtool: link: aarch64-linux-gnu-ranlib .libs/libsupport.a libtool: link: ( cd ".libs" && rm -f "libsupport.la" && ln -s "../libsupport.la" "libsupport.la" ) make[5]: Leaving directory '/build/meep-openmpi-1.25.0/src/support' make[5]: Entering directory '/build/meep-openmpi-1.25.0/src' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array_slice.lo array_slice.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o anisotropic_averaging.lo anisotropic_averaging.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bands.lo bands.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o boundaries.lo boundaries.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bicgstab.lo bicgstab.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o casimir.lo casimir.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cw_fields.lo cw_fields.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft.lo dft.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 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file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2887, from mympi.cpp:32: @@ -1436,8 +1474,6 @@ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.lo near2far.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 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bool)': -meep_internals.hpp:82:38: warning: 'meep::src_vol::amp' will be initialized after [-Wreorder] - 82 | std::vector > amp; // amplitudes - | ^~~ -meep_internals.hpp:78:8: warning: 'bool meep::src_vol::needs_boundary_fix' [-Wreorder] - 78 | bool needs_boundary_fix; // whether fix_boundary_sources needs calling - | ^~~~~~~~~~~~~~~~~~ -sources.cpp:168:1: warning: when initialized here [-Wreorder] - 168 | src_vol::src_vol(component cc, src_time *st, std::vector &&ind, - | ^~~~~~~ output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:115:35: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 115 | snprintf(outdirname, buflen, "%s-out", basename); @@ -1517,18 +1539,32 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 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-I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o step_generic_stride1.cpp:93: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 93 | PS1LOOP_OVER_IVECS(gv, is, ie, i) { @@ -1955,13 +1992,13 @@ meepgeom.cpp:2832:88: warning: unused parameter 'where' [-Wunused-parameter] 2832 | double scalegrad, meep::grid_volume &gv, meep::volume &where, | ~~~~~~~~~~~~~~^~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 meepgeom.cpp: In function 'std::complex meep_geom::cond_cmp(meep::component, const meep::vec&, double, geom_epsilon*)': meepgeom.cpp:2617:1: warning: control reaches end of non-void function [-Wreturn-type] 2617 | } | ^ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient_point(double*, vector3, double, geom_epsilon*, meep::component, meep::component, std::complex, std::complex, double, meep::grid_volume&, double)': meepgeom.cpp:2824:28: warning: 'kind' may be used uninitialized [-Wmaybe-uninitialized] 2824 | add_interpolate_weights(p.x, p.y, p.z, vcur, sz.x, sz.y, sz.z, 1, scalegrad, ucur, kind, uval, @@ -1974,7 +2011,7 @@ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/aarch64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo fields_dump.lo fix_boundary_sources.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo material_data.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/aarch64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo fields_dump.lo fix_boundary_sources.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo material_data.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/fields_dump.o .libs/fix_boundary_sources.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/material_data.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeep.so.30 -o .libs/libmeep.so.30.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.30" && ln -s "libmeep.so.30.0.0" "libmeep.so.30") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.30.0.0" "libmeep.so") @@ -2002,11 +2039,11 @@ ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; compiled /build/meep-openmpi-1.25.0/debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-8-4.6/usr/share/libctl/base/include.scm.go +swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; compiled /build/meep-openmpi-1.25.0/debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-8-4.6/usr/share/libctl/base/include.scm.go -swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl @@ -2093,7 +2130,7 @@ meep_wrap.cxx:36115:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 36115 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-openmpi-1.25.0/scheme' make[3]: Leaving directory '/build/meep-openmpi-1.25.0/scheme' @@ -2109,7 +2146,7 @@ fi make all-am make[4]: Entering directory '/build/meep-openmpi-1.25.0/python' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o .libs/_meep_la-meep-python.o meep-python.cxx: In function 'meep::structure* create_structure(vector3, std::vector, std::vector, std::vector, std::vector, std::vector, meep::grid_volume&, const meep::boundary_region&, const meep::symmetry&, int, double, bool, double, int, geometric_object_list, vector3, bool, meep_geom::material_type, meep_geom::absorber_list, meep_geom::material_type_list, bool, bool, meep::structure*, bool, const meep::binary_partition*)': meep-python.cxx:7526:62: warning: unused parameter 'alist' [-Wunused-parameter] @@ -11215,7 +11252,7 @@ 115 | static PyObject *py_volume_object() { | ^~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-openmpi-1.25.0/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.30 -o .libs/_meep.so.30.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.30" && ln -s "_meep.so.30.0.0" "_meep.so.30") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.30.0.0" "_meep.so") @@ -11268,94 +11305,94 @@ make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical dump_load flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d bend-flux-ll array-metadata make[4]: Entering directory '/build/meep-openmpi-1.25.0/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib 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-lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o user-defined-material user-defined-material.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu 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-ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/dft-fields dft-fields.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o gdsII-3d.o gdsII-3d.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/gdsII-3d gdsII-3d.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/bend-flux-ll bend-flux-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -pthread -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array-metadata.o array-metadata.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/array-metadata array-metadata.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-openmpi-1.25.0/tests' make check-TESTS @@ -11737,9 +11774,9 @@ ./tests/2D_convergence.cpp ./src ./src/libmeep.la +./src/meepgeom.lo ./src/step_generic_stride1.lo ./src/step_generic_stride1.o -./src/meepgeom.lo ./src/meepgeom.o ./src/step_generic.lo ./src/step_generic.o @@ -11755,20 +11792,20 @@ ./src/update_eh.o ./src/time.lo ./src/time.o -./src/update_pols.lo -./src/update_pols.o ./src/mpb.lo +./src/update_pols.lo ./src/mpb.o +./src/update_pols.o ./src/structure_dump.lo ./src/structure_dump.o -./src/stress.lo -./src/stress.o ./src/step_db.lo -./src/near2far.lo ./src/step_db.o -./src/near2far.o +./src/stress.lo +./src/stress.o ./src/sources.lo +./src/near2far.lo ./src/sources.o +./src/near2far.o ./src/step.lo ./src/step.o ./src/mympi.lo @@ -11782,35 +11819,35 @@ ./src/monitor.lo ./src/monitor.o ./src/integrate2.lo -./src/initialize.lo ./src/integrate2.o -./src/initialize.o ./src/material_data.lo -./src/integrate.lo ./src/material_data.o +./src/initialize.lo +./src/initialize.o +./src/integrate.lo ./src/integrate.o -./src/h5file.lo -./src/h5file.o ./src/fix_boundary_sources.lo ./src/fix_boundary_sources.o +./src/h5file.lo +./src/h5file.o ./src/loop_in_chunks.lo ./src/loop_in_chunks.o ./src/h5fields.lo ./src/h5fields.o -./src/boundaries.lo -./src/fields.lo -./src/boundaries.o ./src/fields_dump.lo -./src/fields.o ./src/fields_dump.o +./src/fields.lo +./src/fields.o +./src/boundaries.lo +./src/boundaries.o ./src/dft.lo ./src/dft.o ./src/anisotropic_averaging.lo ./src/anisotropic_averaging.o -./src/energy_and_flux.lo -./src/energy_and_flux.o ./src/dft_ldos.lo ./src/dft_ldos.o +./src/energy_and_flux.lo +./src/energy_and_flux.o ./src/array_slice.lo ./src/array_slice.o ./src/cw_fields.lo @@ -11818,9 +11855,9 @@ ./src/casimir.lo ./src/casimir.o ./src/bands.lo +./src/bands.o ./src/bicgstab.lo ./src/bicgstab.o -./src/bands.o ./src/sphere-quad.h ./src/sphere_quad ./src/.libs @@ -11833,40 +11870,40 @@ ./src/.libs/step_generic_stride1.o ./src/.libs/meepgeom.o ./src/.libs/step_generic.o +./src/.libs/vec.o ./src/.libs/GDSIIgeom.o ./src/.libs/structure.o -./src/.libs/vec.o ./src/.libs/update_eh.o -./src/.libs/time.o -./src/.libs/update_pols.o ./src/.libs/susceptibility.o ./src/.libs/mpb.o +./src/.libs/update_pols.o +./src/.libs/time.o ./src/.libs/structure_dump.o -./src/.libs/stress.o ./src/.libs/step_db.o +./src/.libs/stress.o ./src/.libs/sources.o -./src/.libs/near2far.o ./src/.libs/step.o -./src/.libs/output_directory.o +./src/.libs/near2far.o ./src/.libs/random.o -./src/.libs/multilevel-atom.o +./src/.libs/output_directory.o ./src/.libs/mympi.o +./src/.libs/multilevel-atom.o ./src/.libs/monitor.o ./src/.libs/material_data.o ./src/.libs/integrate2.o ./src/.libs/integrate.o ./src/.libs/initialize.o ./src/.libs/h5file.o -./src/.libs/fix_boundary_sources.o ./src/.libs/loop_in_chunks.o +./src/.libs/fix_boundary_sources.o ./src/.libs/h5fields.o ./src/.libs/fields_dump.o ./src/.libs/fields.o ./src/.libs/boundaries.o ./src/.libs/dft_ldos.o ./src/.libs/energy_and_flux.o -./src/.libs/dft.o ./src/.libs/anisotropic_averaging.o +./src/.libs/dft.o ./src/.libs/array_slice.o ./src/.libs/cw_fields.o ./src/.libs/casimir.o @@ -11960,11 +11997,11 @@ ./scheme/geom.cpp ./scheme/main.cpp ./scheme/meep-enums.scm -./scheme/meep_swig_bug_workaround.i ./scheme/meep_enum_renames.i +./scheme/meep_swig_bug_workaround.i +./scheme/ctl-io.h ./scheme/meep_renames.i ./scheme/ctl-io.i -./scheme/ctl-io.h ./scheme/meep.scm ./scheme/Makefile ./scheme/Makefile.in @@ -12034,8 +12071,8 @@ ./python/meep/__pycache__/simulation.cpython-311.pyc ./python/meep/__pycache__/verbosity_mgr.cpython-311.pyc ./python/meep/__pycache__/source.cpython-311.pyc -./python/meep/__pycache__/geom.cpython-311.pyc ./python/meep/__pycache__/__init__.cpython-311.pyc +./python/meep/__pycache__/geom.cpython-311.pyc ./python/meep/_meep.so ./python/meep/verbosity_mgr.py ./python/meep/materials.py @@ -12790,7 +12827,7 @@ make[5]: Entering directory '/build/meep-openmpi-1.25.0/src' make[6]: Entering directory '/build/meep-openmpi-1.25.0/src' /usr/bin/mkdir -p '/build/meep-openmpi-1.25.0/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-openmpi-1.25.0/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-openmpi-1.25.0/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.30.0.0 /build/meep-openmpi-1.25.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.so.30.0.0 libtool: install: (cd /build/meep-openmpi-1.25.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.30.0.0 libmeep.so.30 || { rm -f libmeep.so.30 && ln -s libmeep.so.30.0.0 libmeep.so.30; }; }) libtool: install: (cd /build/meep-openmpi-1.25.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.30.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.30.0.0 libmeep.so; }; }) @@ -12820,7 +12857,7 @@ make[4]: Entering directory '/build/meep-openmpi-1.25.0/scheme' make[5]: Entering directory '/build/meep-openmpi-1.25.0/scheme' /usr/bin/mkdir -p '/build/meep-openmpi-1.25.0/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-openmpi-1.25.0/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/meep-openmpi-1.25.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-openmpi-1.25.0/debian/tmp/usr/bin/meep /usr/bin/mkdir -p '/build/meep-openmpi-1.25.0/debian/tmp/usr/share/meep' @@ -12834,9 +12871,9 @@ make[4]: Entering directory '/build/meep-openmpi-1.25.0/python' make[5]: Entering directory '/build/meep-openmpi-1.25.0/python' /usr/bin/mkdir -p '/build/meep-openmpi-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' - /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-openmpi-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' + /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-openmpi-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep' libtool: warning: relinking '_meep.la' -libtool: install: (cd /build/meep-openmpi-1.25.0/python; /bin/bash "/build/meep-openmpi-1.25.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-openmpi-1.25.0/debian/tmp) +libtool: install: (cd /build/meep-openmpi-1.25.0/python; /bin/sh "/build/meep-openmpi-1.25.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-1.25.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 30:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.11/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-openmpi-1.25.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-openmpi-1.25.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.30 -o .libs/_meep.so.30.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.30.0.0T /build/meep-openmpi-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep/_meep.so.30.0.0 libtool: install: (cd /build/meep-openmpi-1.25.0/debian/tmp/usr/lib/python3.11/site-packages/meep && { ln -s -f _meep.so.30.0.0 _meep.so.30 || { rm -f _meep.so.30 && ln -s _meep.so.30.0.0 _meep.so.30; }; }) @@ -13022,13 +13059,6 @@ ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog.Debian -./debian/libmeep-openmpi30 -./debian/libmeep-openmpi30/usr -./debian/libmeep-openmpi30/usr/share -./debian/libmeep-openmpi30/usr/share/doc -./debian/libmeep-openmpi30/usr/share/doc/libmeep-openmpi30 -./debian/libmeep-openmpi30/usr/share/doc/libmeep-openmpi30/changelog -./debian/libmeep-openmpi30/usr/share/doc/libmeep-openmpi30/changelog.Debian ./debian/libmeep-openmpi-dev ./debian/libmeep-openmpi-dev/usr ./debian/libmeep-openmpi-dev/usr/share @@ -13043,17 +13073,24 @@ ./debian/meep-openmpi/usr/share/doc/meep-openmpi ./debian/meep-openmpi/usr/share/doc/meep-openmpi/changelog ./debian/meep-openmpi/usr/share/doc/meep-openmpi/changelog.Debian +./debian/libmeep-openmpi30 +./debian/libmeep-openmpi30/usr +./debian/libmeep-openmpi30/usr/share +./debian/libmeep-openmpi30/usr/share/doc +./debian/libmeep-openmpi30/usr/share/doc/libmeep-openmpi30 +./debian/libmeep-openmpi30/usr/share/doc/libmeep-openmpi30/changelog +./debian/libmeep-openmpi30/usr/share/doc/libmeep-openmpi30/changelog.Debian ./debian/debhelper-build-stamp ./debian/.debhelper ./debian/.debhelper/generated ./debian/.debhelper/generated/python3-meep-openmpi ./debian/.debhelper/generated/python3-meep-openmpi/dh_installchangelogs.dch.trimmed -./debian/.debhelper/generated/libmeep-openmpi30 -./debian/.debhelper/generated/libmeep-openmpi30/dh_installchangelogs.dch.trimmed ./debian/.debhelper/generated/libmeep-openmpi-dev ./debian/.debhelper/generated/libmeep-openmpi-dev/dh_installchangelogs.dch.trimmed ./debian/.debhelper/generated/meep-openmpi ./debian/.debhelper/generated/meep-openmpi/dh_installchangelogs.dch.trimmed +./debian/.debhelper/generated/libmeep-openmpi30 +./debian/.debhelper/generated/libmeep-openmpi30/dh_installchangelogs.dch.trimmed ./debian/.debhelper/generated/_source ./debian/.debhelper/generated/_source/home ./debian/.debhelper/generated/_source/home/.cache @@ -13264,9 +13301,9 @@ ./tests/2D_convergence.cpp ./src ./src/libmeep.la +./src/meepgeom.lo ./src/step_generic_stride1.lo ./src/step_generic_stride1.o -./src/meepgeom.lo ./src/meepgeom.o ./src/step_generic.lo ./src/step_generic.o @@ -13282,20 +13319,20 @@ ./src/update_eh.o ./src/time.lo ./src/time.o -./src/update_pols.lo -./src/update_pols.o ./src/mpb.lo +./src/update_pols.lo ./src/mpb.o +./src/update_pols.o ./src/structure_dump.lo ./src/structure_dump.o -./src/stress.lo -./src/stress.o ./src/step_db.lo -./src/near2far.lo ./src/step_db.o -./src/near2far.o +./src/stress.lo +./src/stress.o ./src/sources.lo +./src/near2far.lo ./src/sources.o +./src/near2far.o ./src/step.lo ./src/step.o ./src/mympi.lo @@ -13309,35 +13346,35 @@ ./src/monitor.lo ./src/monitor.o ./src/integrate2.lo -./src/initialize.lo ./src/integrate2.o -./src/initialize.o ./src/material_data.lo -./src/integrate.lo ./src/material_data.o +./src/initialize.lo +./src/initialize.o +./src/integrate.lo ./src/integrate.o -./src/h5file.lo -./src/h5file.o ./src/fix_boundary_sources.lo ./src/fix_boundary_sources.o +./src/h5file.lo +./src/h5file.o ./src/loop_in_chunks.lo ./src/loop_in_chunks.o ./src/h5fields.lo ./src/h5fields.o -./src/boundaries.lo -./src/fields.lo -./src/boundaries.o ./src/fields_dump.lo -./src/fields.o ./src/fields_dump.o +./src/fields.lo +./src/fields.o +./src/boundaries.lo +./src/boundaries.o ./src/dft.lo ./src/dft.o ./src/anisotropic_averaging.lo ./src/anisotropic_averaging.o -./src/energy_and_flux.lo -./src/energy_and_flux.o ./src/dft_ldos.lo ./src/dft_ldos.o +./src/energy_and_flux.lo +./src/energy_and_flux.o ./src/array_slice.lo ./src/array_slice.o ./src/cw_fields.lo @@ -13345,9 +13382,9 @@ ./src/casimir.lo ./src/casimir.o ./src/bands.lo +./src/bands.o ./src/bicgstab.lo ./src/bicgstab.o -./src/bands.o ./src/sphere-quad.h ./src/sphere_quad ./src/.libs @@ -13360,40 +13397,40 @@ ./src/.libs/step_generic_stride1.o ./src/.libs/meepgeom.o ./src/.libs/step_generic.o +./src/.libs/vec.o ./src/.libs/GDSIIgeom.o ./src/.libs/structure.o -./src/.libs/vec.o ./src/.libs/update_eh.o -./src/.libs/time.o -./src/.libs/update_pols.o ./src/.libs/susceptibility.o ./src/.libs/mpb.o +./src/.libs/update_pols.o +./src/.libs/time.o ./src/.libs/structure_dump.o -./src/.libs/stress.o ./src/.libs/step_db.o +./src/.libs/stress.o ./src/.libs/sources.o -./src/.libs/near2far.o ./src/.libs/step.o -./src/.libs/output_directory.o +./src/.libs/near2far.o ./src/.libs/random.o -./src/.libs/multilevel-atom.o +./src/.libs/output_directory.o ./src/.libs/mympi.o +./src/.libs/multilevel-atom.o ./src/.libs/monitor.o ./src/.libs/material_data.o ./src/.libs/integrate2.o ./src/.libs/integrate.o ./src/.libs/initialize.o ./src/.libs/h5file.o -./src/.libs/fix_boundary_sources.o ./src/.libs/loop_in_chunks.o +./src/.libs/fix_boundary_sources.o ./src/.libs/h5fields.o ./src/.libs/fields_dump.o ./src/.libs/fields.o ./src/.libs/boundaries.o ./src/.libs/dft_ldos.o ./src/.libs/energy_and_flux.o -./src/.libs/dft.o ./src/.libs/anisotropic_averaging.o +./src/.libs/dft.o ./src/.libs/array_slice.o ./src/.libs/cw_fields.o ./src/.libs/casimir.o @@ -13487,11 +13524,11 @@ ./scheme/geom.cpp ./scheme/main.cpp ./scheme/meep-enums.scm -./scheme/meep_swig_bug_workaround.i ./scheme/meep_enum_renames.i +./scheme/meep_swig_bug_workaround.i +./scheme/ctl-io.h ./scheme/meep_renames.i ./scheme/ctl-io.i -./scheme/ctl-io.h ./scheme/meep.scm ./scheme/Makefile ./scheme/Makefile.in @@ -13561,8 +13598,8 @@ ./python/meep/__pycache__/simulation.cpython-311.pyc ./python/meep/__pycache__/verbosity_mgr.cpython-311.pyc ./python/meep/__pycache__/source.cpython-311.pyc -./python/meep/__pycache__/geom.cpython-311.pyc ./python/meep/__pycache__/__init__.cpython-311.pyc +./python/meep/__pycache__/geom.cpython-311.pyc ./python/meep/_meep.so ./python/meep/verbosity_mgr.py ./python/meep/materials.py @@ -14304,18 +14341,18 @@ dh_strip -a dh_makeshlibs -a dh_shlibdeps -a -dpkg-shlibdeps: warning: debian/python3-meep-openmpi/usr/lib/python3/dist-packages/meep/_meep.so.30.0.0 contains an unresolvable reference to symbol _PyObject_New: it's probably a plugin +dpkg-shlibdeps: warning: debian/python3-meep-openmpi/usr/lib/python3/dist-packages/meep/_meep.so.30.0.0 contains an unresolvable reference to symbol PyList_Append: it's probably a plugin dpkg-shlibdeps: warning: 106 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'python3-meep-openmpi-dbgsym' in '../python3-meep-openmpi-dbgsym_1.25.0-2_arm64.deb'. dpkg-deb: building package 'meep-openmpi' in '../meep-openmpi_1.25.0-2_arm64.deb'. -dpkg-deb: building package 'libmeep-openmpi30-dbgsym' in '../libmeep-openmpi30-dbgsym_1.25.0-2_arm64.deb'. -dpkg-deb: building package 'libmeep-openmpi-dev' in '../libmeep-openmpi-dev_1.25.0-2_arm64.deb'. dpkg-deb: building package 'libmeep-openmpi30' in '../libmeep-openmpi30_1.25.0-2_arm64.deb'. +dpkg-deb: building package 'libmeep-openmpi-dev' in '../libmeep-openmpi-dev_1.25.0-2_arm64.deb'. +dpkg-deb: building package 'libmeep-openmpi30-dbgsym' in '../libmeep-openmpi30-dbgsym_1.25.0-2_arm64.deb'. dpkg-deb: building package 'meep-openmpi-dbgsym' in '../meep-openmpi-dbgsym_1.25.0-2_arm64.deb'. +dpkg-deb: building package 'python3-meep-openmpi-dbgsym' in '../python3-meep-openmpi-dbgsym_1.25.0-2_arm64.deb'. dpkg-deb: building package 'python3-meep-openmpi' in '../python3-meep-openmpi_1.25.0-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../meep-openmpi_1.25.0-2_arm64.buildinfo dpkg-genchanges --build=binary -O../meep-openmpi_1.25.0-2_arm64.changes @@ -14324,12 +14361,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/29919/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3580 and its subdirectories -I: Current time: Fri May 19 14:28:38 -12 2023 -I: pbuilder-time-stamp: 1684549718 +I: removing directory /srv/workspace/pbuilder/29919 and its subdirectories +I: Current time: Fri Jun 21 23:32:12 +14 2024 +I: pbuilder-time-stamp: 1718962332