Diff of the two buildlogs: -- --- b1/build.log 2023-04-24 17:56:46.455120928 +0000 +++ b2/build.log 2023-04-24 17:58:01.295804026 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 24 05:55:39 -12 2023 -I: pbuilder-time-stamp: 1682358939 +I: Current time: Mon May 27 14:19:51 +14 2024 +I: pbuilder-time-stamp: 1716769191 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./lucy_1.20.orig.tar.gz] I: copying [./lucy_1.20-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Apr 19 04:58:04 2020 -12 +gpgv: Signature made Mon Apr 20 06:58:04 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -29,52 +29,84 @@ dpkg-source: info: applying spellings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/6012/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 27 14:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='6012' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11812 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nfIr5uAe/pbuilderrc_UErg --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nfIr5uAe/b1 --logfile b1/build.log lucy_1.20-3.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nfIr5uAe/pbuilderrc_4XYu --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nfIr5uAe/b2 --logfile b2/build.log --extrapackages usrmerge lucy_1.20-3.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink12-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 24 02:18 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/6012/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 26 06:49 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -140,7 +172,7 @@ Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] -Fetched 18.3 MB in 1s (33.3 MB/s) +Fetched 18.3 MB in 1s (34.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -274,8 +306,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-3 dpkg-buildpackage: info: source distribution unstable @@ -441,17 +482,9 @@ abi.c:70:15: warning: implicit declaration of function 'random' [-Wimplicit-function-declaration] 70 | case 5: tmp=random()%2 ? 2 : 0; break; | ^~~~~~ -poly.c: In function 'poly_at_left': -poly.c:22:9: warning: implicit declaration of function 'abi_code' [-Wimplicit-function-declaration] - 22 | if (abi_code(*seq)==T) { - | ^~~~~~~~ abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] 82 | giveup("how can other cases happen in tag_code?"); | ^~~~~~ -vector.c: In function 'construct_vector_tags': -vector.c:85:34: warning: array subscript has type 'char' [-Wchar-subscripts] - 85 | accr|=tag_code(rev_code[seq[len-k%len-1]]); - | ~~~^~~~~~~~~~~~~ abi.c: In function 'abi_align': abi.c:195:18: warning: array subscript has type 'char' [-Wchar-subscripts] 195 | if (badness[a[i]][b[j]]) { @@ -477,6 +510,33 @@ abi.c:233:36: warning: array subscript has type 'char' [-Wchar-subscripts] 233 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:294:45: warning: array subscript has type 'char' [-Wchar-subscripts] + 294 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:301:30: warning: array subscript has type 'char' [-Wchar-subscripts] + 301 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:313:45: warning: array subscript has type 'char' [-Wchar-subscripts] + 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:320:30: warning: array subscript has type 'char' [-Wchar-subscripts] + 320 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:334:45: warning: array subscript has type 'char' [-Wchar-subscripts] + 334 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:341:30: warning: array subscript has type 'char' [-Wchar-subscripts] + 341 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:294:45: warning: array subscript has type 'char' [-Wchar-subscripts] - 294 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:301:30: warning: array subscript has type 'char' [-Wchar-subscripts] - 301 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:313:45: warning: array subscript has type 'char' [-Wchar-subscripts] - 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:320:30: warning: array subscript has type 'char' [-Wchar-subscripts] - 320 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:334:45: warning: array subscript has type 'char' [-Wchar-subscripts] - 334 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:341:30: warning: array subscript has type 'char' [-Wchar-subscripts] - 341 | if ((count+=badness[a[l]][b[r]])=span && j>=width-max_i || j>height/2) | ~~~~~~~~^~~~~~~~~~~~~~~~~ -vector.c: In function 'tag_code': -vector.c:44:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 44 | return tmp; - | ^~~ -vector.c:22:16: note: 'tmp' was declared here - 22 | register int tmp; - | ^~~ +vector.c: In function 'construct_vector_tags': +vector.c:85:34: warning: array subscript has type 'char' [-Wchar-subscripts] + 85 | accr|=tag_code(rev_code[seq[len-k%len-1]]); + | ~~~^~~~~~~~~~~~~ lucy.c: In function 'hashstring': lucy.c:111:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 111 | if (g = value&0xF0000000) { @@ -769,10 +803,6 @@ qual_trim.c:339:1: warning: "/*" within comment [-Wcomment] 339 | /* | -lucy.c: In function 'main': -lucy.c:361:9: warning: implicit declaration of function 'set_bracket' [-Wimplicit-function-declaration] - 361 | set_bracket(bracket_size, bracket_err); - | ^~~~~~~~~~~ qual_trim.c:434:1: warning: "/*" within comment [-Wcomment] 434 | /* Determines a single clean range, after recursively considering all of | @@ -803,9 +833,10 @@ qual_trim.c:443:1: warning: "/*" within comment [-Wcomment] 443 | /* | -lucy.c:469:5: warning: implicit declaration of function 'default_windows' [-Wimplicit-function-declaration] - 469 | default_windows(); - | ^~~~~~~~~~~~~~~ +lucy.c: In function 'main': +lucy.c:361:9: warning: implicit declaration of function 'set_bracket' [-Wimplicit-function-declaration] + 361 | set_bracket(bracket_size, bracket_err); + | ^~~~~~~~~~~ qual_trim.c:569:1: warning: "/*" within comment [-Wcomment] 569 | /* Sets the window size and average probability of error allowed for the | @@ -881,9 +912,6 @@ qual_trim.c:683:1: warning: "/*" within comment [-Wcomment] 683 | /* int *windows, (array of window sizes (largest to smallest)) | -lucy.c:531:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] - 531 | if (pthread_create(&threads[i], NULL, worker, (void*)i)) - | ^ qual_trim.c:684:1: warning: "/*" within comment [-Wcomment] 684 | /* double *err_limits, (array of maximum allowed average probability) | @@ -896,6 +924,12 @@ qual_trim.c:687:1: warning: "/*" within comment [-Wcomment] 687 | /* double end_limit, (maximum allowed probability of error for bases) | +lucy.c:469:5: warning: implicit declaration of function 'default_windows' [-Wimplicit-function-declaration] + 469 | default_windows(); + | ^~~~~~~~~~~~~~~ +lucy.c:531:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] + 531 | if (pthread_create(&threads[i], NULL, worker, (void*)i)) + | ^ qual_trim.c:688:1: warning: "/*" within comment [-Wcomment] 688 | /* ( at each end of clean range) | @@ -979,18 +1013,25 @@ qual_trim.c:836:1: warning: "/*" within comment [-Wcomment] 836 | /* ( at each end of clean range) | -lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] - 639 | quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); - | ^~~~~~~~~~~~ qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] 837 | /* | +lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] + 639 | quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); + | ^~~~~~~~~~~~ lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] 669 | prepare_abi_mask(); | ^~~~~~~~~~~~~~~~ lucy.c:713:9: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); | ^~~~~~~~~ +vector.c: In function 'tag_code': +vector.c:44:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 44 | return tmp; + | ^~~ +vector.c:22:16: note: 'tmp' was declared here + 22 | register int tmp; + | ^~~ lucy.c:792:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 792 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { | ^ @@ -1132,12 +1173,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11812/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/6012 and its subdirectories -I: Current time: Mon Apr 24 05:56:45 -12 2023 -I: pbuilder-time-stamp: 1682359005 +I: removing directory /srv/workspace/pbuilder/11812 and its subdirectories +I: Current time: Mon May 27 14:21:00 +14 2024 +I: pbuilder-time-stamp: 1716769260