Diff of the two buildlogs: -- --- b1/build.log 2023-04-25 07:16:06.316904154 +0000 +++ b2/build.log 2023-04-25 07:20:31.021164172 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 24 19:13:26 -12 2023 -I: pbuilder-time-stamp: 1682406806 +I: Current time: Tue May 28 03:39:10 +14 2024 +I: pbuilder-time-stamp: 1716817150 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./libpdb-redo_3.0.5.orig.tar.gz] I: copying [./libpdb-redo_3.0.5-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Feb 2 20:24:02 2023 -12 +gpgv: Signature made Fri Feb 3 22:24:02 2023 +14 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key @@ -26,52 +26,84 @@ dpkg-source: info: unpacking libpdb-redo_3.0.5-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3324/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 28 03:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3324' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14818 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GoM3mOSt/pbuilderrc_poho --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GoM3mOSt/b1 --logfile b1/build.log libpdb-redo_3.0.5-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GoM3mOSt/pbuilderrc_UXSV --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GoM3mOSt/b2 --logfile b2/build.log --extrapackages usrmerge libpdb-redo_3.0.5-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink12-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 24 02:18 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3324/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 26 06:49 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -233,7 +265,7 @@ Get: 104 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] -Fetched 64.6 MB in 3s (23.2 MB/s) +Fetched 64.6 MB in 1s (48.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -671,8 +703,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libpdb-redo-3.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpdb-redo_3.0.5-2_source.changes +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/libpdb-redo-3.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpdb-redo_3.0.5-2_source.changes dpkg-buildpackage: info: source package libpdb-redo dpkg-buildpackage: info: source version 3.0.5-2 dpkg-buildpackage: info: source distribution unstable @@ -687,7 +728,7 @@ dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure -make[1]: Entering directory '/build/libpdb-redo-3.0.5' +make[1]: Map '/build/libpdb-redo-3.0.5' wordt binnengegaan dh_auto_configure -- -DBUILD_SHARED_LIBS=ON -DPDB_REDO_BUILD_TESTS=ON cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_SHARED_LIBS=ON -DPDB_REDO_BUILD_TESTS=ON .. -- The CXX compiler identification is GNU 12.2.0 @@ -740,30 +781,30 @@ -- Build files have been written to: /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -make[1]: Leaving directory '/build/libpdb-redo-3.0.5' +make[1]: Map '/build/libpdb-redo-3.0.5' wordt verlaten dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 -make[1]: Entering directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[1]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt binnengegaan /usr/bin/cmake -S/build/libpdb-redo-3.0.5 -B/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu/CMakeFiles /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[2]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt binnengegaan make -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/depend -make[3]: Entering directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[3]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt binnengegaan cd /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpdb-redo-3.0.5 /build/libpdb-redo-3.0.5 /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu/CMakeFiles/pdb-redo.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[3]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt verlaten make -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/build -make[3]: Entering directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' -[ 14%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -[ 14%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -[ 21%] Building CXX object CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o +make[3]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt binnengegaan +[ 7%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -MF CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -c /build/libpdb-redo-3.0.5/src/AtomShape.cpp -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -c /build/libpdb-redo-3.0.5/src/DistanceMap.cpp -[ 28%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -c /build/libpdb-redo-3.0.5/src/BondMap.cpp -[ 35%] Building CXX object CMakeFiles/pdb-redo.dir/src/Compound.cpp.o +[ 14%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o +[ 21%] Building CXX object CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -c /build/libpdb-redo-3.0.5/src/ClipperWrapper.cpp +[ 28%] Building CXX object CMakeFiles/pdb-redo.dir/src/Compound.cpp.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -c /build/libpdb-redo-3.0.5/src/BondMap.cpp /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Compound.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -c /build/libpdb-redo-3.0.5/src/Compound.cpp +[ 35%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -c /build/libpdb-redo-3.0.5/src/DistanceMap.cpp [ 42%] Building CXX object CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -MF CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -c /build/libpdb-redo-3.0.5/src/MapMaker.cpp [ 50%] Building CXX object CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o @@ -774,12 +815,6 @@ /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -MF CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -c /build/libpdb-redo-3.0.5/src/SkipList.cpp [ 71%] Building CXX object CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -c /build/libpdb-redo-3.0.5/src/Statistics.cpp -[ 78%] Building CXX object CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o -c /build/libpdb-redo-3.0.5/src/Symmetry-2.cpp -/build/libpdb-redo-3.0.5/src/MapMaker.cpp: In member function ‘void pdb_redo::MapMaker::fixMTZ() [with FTYPE = float]’: -/build/libpdb-redo-3.0.5/src/MapMaker.cpp:1118:22: note: parameter passing for argument of type ‘clipper::datatypes::F_phi’ when C++17 is enabled changed to match C++14 in GCC 10.1 - 1118 | auto mFo = mFbData[ih] - mFdData[ih]; - | ^~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:64, from /usr/include/c++/12/string:50, from /usr/include/c++/12/bits/locale_classes.h:40, @@ -793,6 +828,12 @@ /usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 741 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ +/build/libpdb-redo-3.0.5/src/MapMaker.cpp: In member function ‘void pdb_redo::MapMaker::fixMTZ() [with FTYPE = float]’: +/build/libpdb-redo-3.0.5/src/MapMaker.cpp:1118:22: note: parameter passing for argument of type ‘clipper::datatypes::F_phi’ when C++17 is enabled changed to match C++14 in GCC 10.1 + 1118 | auto mFo = mFbData[ih] - mFdData[ih]; + | ^~~ +[ 78%] Building CXX object CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o -c /build/libpdb-redo-3.0.5/src/Symmetry-2.cpp [ 85%] Building CXX object CMakeFiles/pdb-redo.dir/src/Minimizer.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/libpdb-redo-3.0.5/include -I/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -fPIC -std=gnu++17 -MD -MT CMakeFiles/pdb-redo.dir/src/Minimizer.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Minimizer.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Minimizer.cpp.o -c /build/libpdb-redo-3.0.5/src/Minimizer.cpp [ 92%] Building CXX object CMakeFiles/pdb-redo.dir/src/Restraints.cpp.o @@ -801,22 +842,22 @@ /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb-redo.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/libpdb-redo-3.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpdb-redo.so.3 -o libpdb-redo.so.3.0.5 "CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o" "CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o" "CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o" "CMakeFiles/pdb-redo.dir/src/Compound.cpp.o" "CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o" "CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o" "CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o" "CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o" "CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o" "CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o" "CMakeFiles/pdb-redo.dir/src/Symmetry-2.cpp.o" "CMakeFiles/pdb-redo.dir/src/Minimizer.cpp.o" "CMakeFiles/pdb-redo.dir/src/Restraints.cpp.o" /usr/lib/aarch64-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/aarch64-linux-gnu/libnewuoa.so.0.1.2 /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libclipper-contrib.so /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libccp4c.so /usr/lib/aarch64-linux-gnu/libgsl.so /usr/lib/aarch64-linux-gnu/libgslcblas.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.74.0 /usr/bin/cmake -E cmake_symlink_library libpdb-redo.so.3.0.5 libpdb-redo.so.3 libpdb-redo.so -make[3]: Leaving directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[3]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt verlaten [100%] Built target pdb-redo -make[2]: Leaving directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[2]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt verlaten /usr/bin/cmake -E cmake_progress_start /build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu/CMakeFiles 0 -make[1]: Leaving directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[1]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt verlaten dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/libpdb-redo-3.0.5/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[1]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt binnengegaan /usr/bin/cmake -S/build/libpdb-redo-3.0.5 -B/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[2]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt binnengegaan +make[2]: Er hoeft niets gedaan te worden voor 'preinstall'. +make[2]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt verlaten Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" @@ -843,7 +884,7 @@ -- Installing: /build/libpdb-redo-3.0.5/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/pdb-redo/pdb-redoConfig.cmake -- Installing: /build/libpdb-redo-3.0.5/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/pdb-redo/pdb-redoConfigVersion.cmake -- Installing: /build/libpdb-redo-3.0.5/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libpdb-redo.pc -make[1]: Leaving directory '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' +make[1]: Map '/build/libpdb-redo-3.0.5/obj-aarch64-linux-gnu' wordt verlaten dh_install dh_installdocs dh_installchangelogs @@ -862,9 +903,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_3.0.5-2_arm64.deb'. -dpkg-deb: building package 'libpdb-redo3-dbgsym' in '../libpdb-redo3-dbgsym_3.0.5-2_arm64.deb'. -dpkg-deb: building package 'libpdb-redo3' in '../libpdb-redo3_3.0.5-2_arm64.deb'. +dpkg-deb: pakket 'libpdb-redo3' wordt gebouwd in '../libpdb-redo3_3.0.5-2_arm64.deb'. +dpkg-deb: pakket 'libpdb-redo-dev' wordt gebouwd in '../libpdb-redo-dev_3.0.5-2_arm64.deb'. +dpkg-deb: pakket 'libpdb-redo3-dbgsym' wordt gebouwd in '../libpdb-redo3-dbgsym_3.0.5-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libpdb-redo_3.0.5-2_arm64.buildinfo dpkg-genchanges --build=binary -O../libpdb-redo_3.0.5-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -872,12 +913,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14818/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3324 and its subdirectories -I: Current time: Mon Apr 24 19:16:05 -12 2023 -I: pbuilder-time-stamp: 1682406965 +I: removing directory /srv/workspace/pbuilder/14818 and its subdirectories +I: Current time: Tue May 28 03:43:29 +14 2024 +I: pbuilder-time-stamp: 1716817409