Diff of the two buildlogs: -- --- b1/build.log 2023-05-15 13:16:37.444649888 +0000 +++ b2/build.log 2023-05-15 13:17:55.953221277 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 15 01:15:07 -12 2023 -I: pbuilder-time-stamp: 1684156507 +I: Current time: Mon Jun 17 09:39:40 +14 2024 +I: pbuilder-time-stamp: 1718566780 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./libbioparser-dev_3.0.15.orig.tar.gz] I: copying [./libbioparser-dev_3.0.15-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Nov 17 23:34:41 2022 -12 +gpgv: Signature made Sat Nov 19 01:34:41 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -26,52 +26,84 @@ dpkg-source: info: unpacking libbioparser-dev_3.0.15-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/9379/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 17 09:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='9379' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=9445 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EA1vLxKr/pbuilderrc_Npur --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EA1vLxKr/b1 --logfile b1/build.log libbioparser-dev_3.0.15-3.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EA1vLxKr/pbuilderrc_9bRm --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EA1vLxKr/b2 --logfile b2/build.log --extrapackages usrmerge libbioparser-dev_3.0.15-3.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink14-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/9379/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 15 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -167,7 +199,7 @@ Get: 50 http://deb.debian.org/debian bookworm/main arm64 libbiosoup-dev all 0.10.0-4 [7784 B] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libgtest-dev arm64 1.12.1-0.2 [231 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] -Fetched 31.6 MB in 1s (33.5 MB/s) +Fetched 31.6 MB in 1s (41.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -389,8 +421,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libbioparser-dev-3.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbioparser-dev_3.0.15-3_source.changes +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/libbioparser-dev-3.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbioparser-dev_3.0.15-3_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 3.0.15-3 dpkg-buildpackage: info: source distribution unstable @@ -440,16 +481,16 @@ make[3]: Leaving directory '/build/libbioparser-dev-3.0.15/obj-aarch64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/build make[3]: Entering directory '/build/libbioparser-dev-3.0.15/obj-aarch64-linux-gnu' -[ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o +[ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o +[ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o +/usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/parser_test.cpp /usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/fasta_parser_test.cpp [ 42%] Building CXX object CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o +[ 57%] Building CXX object CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/fastq_parser_test.cpp -[ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -/usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/parser_test.cpp -[ 57%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -/usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/paf_parser_test.cpp -[ 71%] Building CXX object CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/mhap_parser_test.cpp +[ 71%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o +/usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/paf_parser_test.cpp [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/libbioparser-dev-3.0.15/test/data/\" -I/build/libbioparser-dev-3.0.15/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-3.0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -c /build/libbioparser-dev-3.0.15/test/sam_parser_test.cpp [100%] Linking CXX executable bin/bioparser_test @@ -463,7 +504,8 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/libbioparser-dev-3.0.15' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done -+ [ ! -x obj-aarch64-linux-gnu/bin/bioparser_test ] ++ for f in obj-*/bin/*_test ++ '[' '!' -x obj-aarch64-linux-gnu/bin/bioparser_test ']' + obj-aarch64-linux-gnu/bin/bioparser_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 35 tests from 6 test suites. @@ -494,7 +536,7 @@ [ OK ] BioparserFastaTest.CompressedParseAndReset (2 ms) [ RUN ] BioparserFastaTest.CompressedFormatError [ OK ] BioparserFastaTest.CompressedFormatError (3 ms) -[----------] 10 tests from BioparserFastaTest (22 ms total) +[----------] 10 tests from BioparserFastaTest (21 ms total) [----------] 6 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole @@ -524,11 +566,11 @@ [ OK ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedFormatError [ OK ] BioparserMhapTest.CompressedFormatError (0 ms) -[----------] 6 tests from BioparserMhapTest (2 ms total) +[----------] 6 tests from BioparserMhapTest (1 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole -[ OK ] BioparserPafTest.ParseWhole (1 ms) +[ OK ] BioparserPafTest.ParseWhole (2 ms) [ RUN ] BioparserPafTest.ParseInChunks [ OK ] BioparserPafTest.ParseInChunks (1 ms) [ RUN ] BioparserPafTest.FormatError @@ -539,7 +581,7 @@ [ OK ] BioparserPafTest.CompressedParseInChunks (2 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (0 ms) -[----------] 6 tests from BioparserPafTest (8 ms total) +[----------] 6 tests from BioparserPafTest (9 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole @@ -551,13 +593,13 @@ [ RUN ] BioparserSamTest.CompressedParseWhole [ OK ] BioparserSamTest.CompressedParseWhole (11 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks -[ OK ] BioparserSamTest.CompressedParseInChunks (10 ms) +[ OK ] BioparserSamTest.CompressedParseInChunks (11 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserSamTest (29 ms total) [----------] Global test environment tear-down -[==========] 35 tests from 6 test suites ran. (76 ms total) +[==========] 35 tests from 6 test suites ran. (75 ms total) [ PASSED ] 35 tests. make[1]: Leaving directory '/build/libbioparser-dev-3.0.15' create-stamp debian/debhelper-build-stamp @@ -610,12 +652,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/9445/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/9379 and its subdirectories -I: Current time: Mon May 15 01:16:36 -12 2023 -I: pbuilder-time-stamp: 1684156596 +I: removing directory /srv/workspace/pbuilder/9445 and its subdirectories +I: Current time: Mon Jun 17 09:40:54 +14 2024 +I: pbuilder-time-stamp: 1718566854