Diff of the two buildlogs: -- --- b1/build.log 2023-04-10 14:47:35.758385448 +0000 +++ b2/build.log 2023-04-10 14:48:23.100806937 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 10 02:46:31 -12 2023 -I: pbuilder-time-stamp: 1681137991 +I: Current time: Mon May 13 11:10:38 +14 2024 +I: pbuilder-time-stamp: 1715548238 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./libbio-db-ncbihelper-perl_1.7.7.orig.tar.gz] I: copying [./libbio-db-ncbihelper-perl_1.7.7-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Feb 24 08:06:03 2022 -12 +gpgv: Signature made Fri Feb 25 10:06:03 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -28,11 +28,20 @@ dpkg-source: info: applying fix_tests I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2849/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -42,38 +51,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='2849' + PPID='18007' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gQQ56aPU/pbuilderrc_tjiI --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gQQ56aPU/b1 --logfile b1/build.log libbio-db-ncbihelper-perl_1.7.7-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gQQ56aPU/pbuilderrc_doTA --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gQQ56aPU/b2 --logfile b2/build.log --extrapackages usrmerge libbio-db-ncbihelper-perl_1.7.7-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink10-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 7 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2849/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 11 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -218,7 +227,7 @@ Get: 85 http://deb.debian.org/debian bookworm/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 libtest-requiresinternet-perl all 0.05-4 [6864 B] -Fetched 25.9 MB in 2s (16.6 MB/s) +Fetched 25.9 MB in 1s (36.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -592,8 +601,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libbio-db-ncbihelper-perl-1.7.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-ncbihelper-perl_1.7.7-1_source.changes +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/libbio-db-ncbihelper-perl-1.7.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-ncbihelper-perl_1.7.7-1_source.changes dpkg-buildpackage: info: source package libbio-db-ncbihelper-perl dpkg-buildpackage: info: source version 1.7.7-1 dpkg-buildpackage: info: source distribution unstable @@ -620,17 +638,17 @@ dh_auto_build make -j8 make[1]: Entering directory '/build/libbio-db-ncbihelper-perl-1.7.7' +cp lib/Bio/DB/NCBIHelper.pm blib/lib/Bio/DB/NCBIHelper.pm +cp lib/Bio/DB/GenBank.pm blib/lib/Bio/DB/GenBank.pm cp lib/Bio/DB/Query/GenBank.pm blib/lib/Bio/DB/Query/GenBank.pm +cp lib/Bio/DB/Taxonomy/entrez.pm blib/lib/Bio/DB/Taxonomy/entrez.pm cp lib/Bio/DB/EntrezGene.pm blib/lib/Bio/DB/EntrezGene.pm -cp lib/Bio/DB/NCBIHelper.pm blib/lib/Bio/DB/NCBIHelper.pm cp lib/Bio/DB/GenPept.pm blib/lib/Bio/DB/GenPept.pm -cp lib/Bio/DB/Taxonomy/entrez.pm blib/lib/Bio/DB/Taxonomy/entrez.pm -cp lib/Bio/DB/GenBank.pm blib/lib/Bio/DB/GenBank.pm cp bin/bp_biofetch_genbank_proxy blib/script/bp_biofetch_genbank_proxy -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biofetch_genbank_proxy cp bin/bp_download_query_genbank blib/script/bp_download_query_genbank -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_download_query_genbank cp bin/bp_query_entrez_taxa blib/script/bp_query_entrez_taxa +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biofetch_genbank_proxy +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_download_query_genbank "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_query_entrez_taxa Manifying 3 pod documents Manifying 6 pod documents @@ -660,7 +678,7 @@ t/RefSeq.t ............. skipped: NO_NETWORK_TESTING t/Taxonomy.t ........... skipped: NO_NETWORK_TESTING All tests successful. -Files=9, Tests=9, 4 wallclock secs ( 0.11 usr 0.01 sys + 3.61 cusr 0.39 csys = 4.12 CPU) +Files=9, Tests=9, 3 wallclock secs ( 0.08 usr 0.02 sys + 2.89 cusr 0.31 csys = 3.30 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-db-ncbihelper-perl-1.7.7' create-stamp debian/debhelper-build-stamp @@ -670,10 +688,10 @@ make[1]: Entering directory '/build/libbio-db-ncbihelper-perl-1.7.7' Manifying 3 pod documents Manifying 6 pod documents -Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenBank.pm Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenPept.pm -Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/NCBIHelper.pm Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/EntrezGene.pm +Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenBank.pm +Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/NCBIHelper.pm Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Taxonomy/entrez.pm Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Query/GenBank.pm Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_query_entrez_taxa.1p @@ -685,8 +703,8 @@ Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenPept.3pm Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenBank.3pm Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::EntrezGene.3pm -Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/bin/bp_biofetch_genbank_proxy Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/bin/bp_download_query_genbank +Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/bin/bp_biofetch_genbank_proxy Installing /build/libbio-db-ncbihelper-perl-1.7.7/debian/libbio-db-ncbihelper-perl/usr/bin/bp_query_entrez_taxa make[1]: Leaving directory '/build/libbio-db-ncbihelper-perl-1.7.7' dh_installdocs @@ -711,12 +729,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18007/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2849 and its subdirectories -I: Current time: Mon Apr 10 02:47:34 -12 2023 -I: pbuilder-time-stamp: 1681138054 +I: removing directory /srv/workspace/pbuilder/18007 and its subdirectories +I: Current time: Mon May 13 11:11:22 +14 2024 +I: pbuilder-time-stamp: 1715548282