Diff of the two buildlogs: -- --- b1/build.log 2023-05-07 10:40:01.774466661 +0000 +++ b2/build.log 2023-05-07 10:42:05.013061350 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jun 8 05:01:32 -12 2024 -I: pbuilder-time-stamp: 1717866092 +I: Current time: Mon May 8 00:40:05 +14 2023 +I: pbuilder-time-stamp: 1683456005 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./lastz_1.04.22.orig.tar.gz] I: copying [./lastz_1.04.22-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Nov 17 23:28:32 2022 -12 +gpgv: Signature made Sat Nov 19 01:28:32 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,52 +30,84 @@ dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/9280/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/D01_modify_environment starting +debug: Running on codethink12-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 8 00:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='9280' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1504 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.W5hid8LD/pbuilderrc_Jfa5 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.W5hid8LD/b1 --logfile b1/build.log lastz_1.04.22-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.W5hid8LD/pbuilderrc_d8Hg --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.W5hid8LD/b2 --logfile b2/build.log --extrapackages usrmerge lastz_1.04.22-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink9-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 7 04:49 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/9280/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 7 00:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -159,7 +191,7 @@ Get: 42 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] -Fetched 24.0 MB in 0s (50.1 MB/s) +Fetched 24.0 MB in 4s (5615 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -351,8 +383,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lastz-1.04.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lastz_1.04.22-2_source.changes +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/lastz-1.04.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lastz_1.04.22-2_source.changes dpkg-buildpackage: info: source package lastz dpkg-buildpackage: info: source version 1.04.22-2 dpkg-buildpackage: info: source distribution unstable @@ -363,16 +404,16 @@ dh clean --with python3 dh_auto_clean make -j8 clean -make[1]: Entering directory '/build/lastz-1.04.22' +make[1]: Map '/build/lastz-1.04.22' wordt binnengegaan cd src && make clean -make[2]: Entering directory '/build/lastz-1.04.22/src' +make[2]: Map '/build/lastz-1.04.22/src' wordt binnengegaan rm -f *.o rm -f lastz rm -f ../test_results/base_test*.* rm -f lastz_D rm -f lastz_32 -make[2]: Leaving directory '/build/lastz-1.04.22/src' -make[1]: Leaving directory '/build/lastz-1.04.22' +make[2]: Map '/build/lastz-1.04.22/src' wordt verlaten +make[1]: Map '/build/lastz-1.04.22' wordt verlaten dh_clean debian/rules binary dh binary --with python3 @@ -381,9 +422,9 @@ dh_auto_configure dh_auto_build make -j8 "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/lastz-1.04.22' +make[1]: Map '/build/lastz-1.04.22' wordt binnengegaan cd src && make lastz lastz_D -make[2]: Entering directory '/build/lastz-1.04.22/src' +make[2]: Map '/build/lastz-1.04.22/src' wordt binnengegaan gcc -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/lastz-1.04.22=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra -Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\" -DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"22"\" -DREVISION_DATE="\"20220807"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' lastz.c -o lastz.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/lastz-1.04.22=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra -Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\" -DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"22"\" -DREVISION_DATE="\"20220807"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' infer_scores.c -o infer_scores.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/lastz-1.04.22=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra -Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\" -DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"22"\" -DREVISION_DATE="\"20220807"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' seeds.c -o seeds.o @@ -446,14 +487,14 @@ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/lastz-1.04.22=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra -Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\" -DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"22"\" -DREVISION_DATE="\"20220807"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\' capsule.c -o capsule_D.o gcc lastz.o infer_scores.o seeds.o pos_table.o quantum.o seed_search.o diag_hash.o chain.o gapped_extend.o tweener.o masking.o segment.o edit_script.o identity_dist.o coverage_dist.o continuity_dist.o output.o gfa.o lav.o axt.o maf.o cigar.o sam.o genpaf.o text_align.o align_diffs.o utilities.o dna_utilities.o sequences.o capsule.o -lm -o lastz -Wl,-z,relro -Wl,-z,now gcc lastz_D.o infer_scores_D.o seeds_D.o pos_table_D.o quantum_D.o seed_search_D.o diag_hash_D.o chain_D.o gapped_extend_D.o tweener_D.o masking_D.o segment_D.o edit_script_D.o identity_dist_D.o coverage_dist_D.o continuity_dist_D.o output_D.o gfa_D.o lav_D.o axt_D.o maf_D.o cigar_D.o sam_D.o genpaf_D.o text_align_D.o align_diffs_D.o utilities_D.o dna_utilities_D.o sequences_D.o capsule_D.o -lm -o lastz_D -Wl,-z,relro -Wl,-z,now -make[2]: Leaving directory '/build/lastz-1.04.22/src' -make[1]: Leaving directory '/build/lastz-1.04.22' +make[2]: Map '/build/lastz-1.04.22/src' wordt verlaten +make[1]: Map '/build/lastz-1.04.22' wordt verlaten debian/rules override_dh_auto_test -make[1]: Entering directory '/build/lastz-1.04.22' +make[1]: Map '/build/lastz-1.04.22' wordt binnengegaan /usr/bin/make base_tests -make[2]: Entering directory '/build/lastz-1.04.22' +make[2]: Map '/build/lastz-1.04.22' wordt binnengegaan cd src && /usr/bin/make base_tests -make[3]: Entering directory '/build/lastz-1.04.22/src' +make[3]: Map '/build/lastz-1.04.22/src' wordt binnengegaan SUCCESS: ../test_data/base_test.hits.lav and ../test_results/base_test.hits.lav are equivalent SUCCESS: ../test_data/base_test.hsp.lav and ../test_results/base_test.hsp.lav are equivalent SUCCESS: ../test_data/base_test.adaptive_k.gfa and ../test_results/base_test.adaptive_k.gfa are equivalent @@ -473,37 +514,40 @@ SUCCESS: ../test_data/base_test.masking.lav and ../test_results/base_test.masking.lav are equivalent SUCCESS: ../test_data/base_test.subrange.lav and ../test_results/base_test.subrange.lav are equivalent SUCCESS: ../test_data/base_test.mask.lav and ../test_results/base_test.mask.lav are equivalent -make[3]: Leaving directory '/build/lastz-1.04.22/src' -make[2]: Leaving directory '/build/lastz-1.04.22' +make[3]: Map '/build/lastz-1.04.22/src' wordt verlaten +make[2]: Map '/build/lastz-1.04.22' wordt verlaten /usr/bin/make test -make[2]: Entering directory '/build/lastz-1.04.22' +make[2]: Map '/build/lastz-1.04.22' wordt binnengegaan cd src && /usr/bin/make test -make[3]: Entering directory '/build/lastz-1.04.22/src' -make[3]: Leaving directory '/build/lastz-1.04.22/src' -make[2]: Leaving directory '/build/lastz-1.04.22' +make[3]: Map '/build/lastz-1.04.22/src' wordt binnengegaan +make[3]: Map '/build/lastz-1.04.22/src' wordt verlaten +make[2]: Map '/build/lastz-1.04.22' wordt verlaten /usr/bin/make clean_test -make[2]: Entering directory '/build/lastz-1.04.22' +make[2]: Map '/build/lastz-1.04.22' wordt binnengegaan cd src && /usr/bin/make clean_tests -make[3]: Entering directory '/build/lastz-1.04.22/src' +make[3]: Map '/build/lastz-1.04.22/src' wordt binnengegaan rm -f ../test_results/base_test*.* -make[3]: Leaving directory '/build/lastz-1.04.22/src' -make[2]: Leaving directory '/build/lastz-1.04.22' -make[1]: Leaving directory '/build/lastz-1.04.22' +make[3]: Map '/build/lastz-1.04.22/src' wordt verlaten +make[2]: Map '/build/lastz-1.04.22' wordt verlaten +make[1]: Map '/build/lastz-1.04.22' wordt verlaten create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j8 install DESTDIR=/build/lastz-1.04.22/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/lastz-1.04.22' +make[1]: Map '/build/lastz-1.04.22' wordt binnengegaan cd src && make install -make[2]: Entering directory '/build/lastz-1.04.22/src' +make[2]: Map '/build/lastz-1.04.22/src' wordt binnengegaan install --strip-program=true -d /build/lastz-1.04.22/debian/.debhelper/generated/_source/home/lastz-distrib/bin -install: WARNING: ignoring --strip-program option as -s option was not specified +install: Waarschuwing: optie '--strip-program' wordt genegeerd +want optie '-s' is niet gegeven install --strip-program=true lastz /build/lastz-1.04.22/debian/.debhelper/generated/_source/home/lastz-distrib/bin -install: WARNING: ignoring --strip-program option as -s option was not specified +install: Waarschuwing: optie '--strip-program' wordt genegeerd +want optie '-s' is niet gegeven install --strip-program=true lastz_D /build/lastz-1.04.22/debian/.debhelper/generated/_source/home/lastz-distrib/bin -install: WARNING: ignoring --strip-program option as -s option was not specified -make[2]: Leaving directory '/build/lastz-1.04.22/src' -make[1]: Leaving directory '/build/lastz-1.04.22' +install: Waarschuwing: optie '--strip-program' wordt genegeerd +want optie '-s' is niet gegeven +make[2]: Map '/build/lastz-1.04.22/src' wordt verlaten +make[1]: Map '/build/lastz-1.04.22' wordt verlaten dh_install dh_installdocs dh_installchangelogs @@ -524,9 +568,9 @@ dpkg-gencontrol: warning: Depends field of package lastz-examples: substitution variable ${python3:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'lastz-dbgsym' in '../lastz-dbgsym_1.04.22-2_arm64.deb'. -dpkg-deb: building package 'lastz' in '../lastz_1.04.22-2_arm64.deb'. -dpkg-deb: building package 'lastz-examples' in '../lastz-examples_1.04.22-2_all.deb'. +dpkg-deb: pakket 'lastz-dbgsym' wordt gebouwd in '../lastz-dbgsym_1.04.22-2_arm64.deb'. +dpkg-deb: pakket 'lastz-examples' wordt gebouwd in '../lastz-examples_1.04.22-2_all.deb'. +dpkg-deb: pakket 'lastz' wordt gebouwd in '../lastz_1.04.22-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../lastz_1.04.22-2_arm64.buildinfo dpkg-genchanges --build=binary -O../lastz_1.04.22-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -534,12 +578,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1504/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/9280 and its subdirectories -I: Current time: Sat Jun 8 05:03:00 -12 2024 -I: pbuilder-time-stamp: 1717866180 +I: removing directory /srv/workspace/pbuilder/1504 and its subdirectories +I: Current time: Mon May 8 00:42:04 +14 2023 +I: pbuilder-time-stamp: 1683456124