Diff of the two buildlogs: -- --- b1/build.log 2023-04-26 23:55:03.455512526 +0000 +++ b2/build.log 2023-04-27 00:22:26.410590320 +0000 @@ -1,1045 +1,8 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 26 11:39:11 -12 2023 -I: pbuilder-time-stamp: 1682552351 +I: Current time: Thu Apr 27 13:55:08 +14 2023 +I: pbuilder-time-stamp: 1682553308 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] -tar: ./bin: time stamp 2024-05-28 04:48:56 is 34362584.57173798 s in the future -tar: ./dev/shm: time stamp 2024-05-28 16:30:22 is 34404670.57153124 s in the future -tar: ./dev/null: time stamp 2024-05-28 04:48:25 is 34362553.57140082 s in the future -tar: ./dev/zero: time stamp 2024-05-28 04:48:25 is 34362553.57135068 s in the future -tar: ./dev/full: time stamp 2024-05-28 04:48:25 is 34362553.57131056 s in the future -tar: ./dev/random: time stamp 2024-05-28 04:48:25 is 34362553.57127334 s in the future -tar: ./dev/urandom: time stamp 2024-05-28 04:48:25 is 34362553.57123724 s in the future -tar: ./dev/tty: time stamp 2024-05-28 04:48:25 is 34362553.57120134 s in the future -tar: ./dev/console: time stamp 2024-05-28 04:48:25 is 34362553.57116588 s in the future -tar: ./dev/pts: time stamp 2024-05-28 04:48:25 is 34362553.57112514 s in the future -tar: ./dev/ptmx: time stamp 2024-05-28 04:48:25 is 34362553.57109354 s in the future -tar: ./etc/resolv.conf: time stamp 2024-05-28 16:30:22 is 34404670.57101202 s in the future -tar: ./etc/mailname: time stamp 2024-05-28 16:30:22 is 34404670.57095186 s in the future -tar: ./etc/hostname: time stamp 2024-05-28 16:30:22 is 34404670.57090714 s in the future -tar: ./etc/hosts: time stamp 2024-05-28 16:30:22 is 34404670.57086654 s in the future -tar: ./etc/apt/sources.list: time stamp 2024-05-28 04:50:35 is 34362683.57074606 s in the future -tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2024-05-28 04:50:35 is 34362683.57069136 s in the 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04:48:49 is 34362577.56729454 s in the future -tar: ./etc/selinux: time stamp 2024-05-28 04:48:47 is 34362575.5665201 s in the future -tar: ./etc/terminfo: time stamp 2024-05-28 04:48:48 is 34362576.5664329 s in the future -tar: ./etc/security/opasswd: time stamp 2024-05-28 04:48:54 is 34362582.56602978 s in the future -tar: ./etc/security: time stamp 2024-05-28 04:48:54 is 34362582.5659865 s in the future -tar: ./etc/pam.d/common-auth: time stamp 2024-05-28 04:48:54 is 34362582.56551752 s in the future -tar: ./etc/pam.d/common-account: time stamp 2024-05-28 04:48:54 is 34362582.56545712 s in the future -tar: ./etc/pam.d/common-password: time stamp 2024-05-28 04:48:54 is 34362582.56541384 s in the future -tar: ./etc/pam.d/common-session: time stamp 2024-05-28 04:48:54 is 34362582.56535904 s in the future -tar: ./etc/pam.d/common-session-noninteractive: time stamp 2024-05-28 04:48:54 is 34362582.56530702 s in the future -tar: ./etc/pam.d: time stamp 2024-05-28 04:48:54 is 34362582.56527358 s in the future -tar: ./etc/perl/Net: time stamp 2024-05-28 04:48:54 is 34362582.5651929 s in the future -tar: ./etc/init.d: time stamp 2024-05-28 04:48:49 is 34362577.56503848 s in the future -tar: ./etc/fstab: time stamp 2024-05-28 04:48:25 is 34362553.56497626 s in the future -tar: ./etc/opt: time stamp 2024-05-28 04:48:26 is 34362554.56487112 s in the future -tar: ./etc/timezone: time stamp 2024-05-28 04:48:48 is 34362576.56482748 s in the future -tar: ./etc/environment: time stamp 2024-05-28 04:48:54 is 34362582.564749 s in the future -tar: ./etc/.pwd.lock: time stamp 2024-05-28 04:48:54 is 34362582.56471048 s in the future -tar: ./etc/shadow: time stamp 2024-05-28 04:48:54 is 34362582.5646061 s in the future -tar: ./etc/passwd-: time stamp 2024-05-28 04:48:25 is 34362553.56451038 s in the future -tar: ./etc/passwd: time stamp 2024-05-28 04:48:54 is 34362582.56445574 s in the future -tar: ./etc/gshadow: time stamp 2024-05-28 04:48:54 is 34362582.56436652 s in the 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04:48:34 is 34362553.54206962 s in the future -tar: ./usr/share/locale/lg/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54202558 s in the future -tar: ./usr/share/locale/kk/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54198066 s in the future -tar: ./usr/share/locale/ia/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54193702 s in the future -tar: ./usr/share/locale/be/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54189332 s in the future -tar: ./usr/share/locale/sr/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54184988 s in the future -tar: ./usr/share/locale/sr: time stamp 2024-05-28 04:48:14 is 34362533.54182162 s in the future -tar: ./usr/share/locale/id/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54179206 s in the future -tar: ./usr/share/locale/id: time stamp 2024-05-28 04:48:14 is 34362533.54176334 s in the future -tar: ./usr/share/locale/hr/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54173394 s in the future -tar: 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future -tar: ./usr/share/locale/zh_TW: time stamp 2024-05-28 04:48:14 is 34362533.54139452 s in the future -tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54136474 s in the future -tar: ./usr/share/locale/zh_CN: time stamp 2024-05-28 04:48:14 is 34362533.5413355 s in the future -tar: ./usr/share/locale/vi/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54130582 s in the future -tar: ./usr/share/locale/vi: time stamp 2024-05-28 04:48:14 is 34362533.54127734 s in the future -tar: ./usr/share/locale/uk/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54124822 s in the future -tar: ./usr/share/locale/uk: time stamp 2024-05-28 04:48:14 is 34362533.54122012 s in the future -tar: ./usr/share/locale/tr/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54119056 s in the future -tar: ./usr/share/locale/tr: time stamp 2024-05-28 04:48:14 is 34362533.5411624 s in the future -tar: ./usr/share/locale/sv/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54113564 s in the future -tar: ./usr/share/locale/sv: time stamp 2024-05-28 04:48:14 is 34362533.54110754 s in the future -tar: ./usr/share/locale/sl/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.5410786 s in the future -tar: ./usr/share/locale/sl: time stamp 2024-05-28 04:48:14 is 34362533.5410504 s in the future -tar: ./usr/share/locale/sk/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54102164 s in the future -tar: ./usr/share/locale/sk: time stamp 2024-05-28 04:48:14 is 34362533.54099364 s in the future -tar: ./usr/share/locale/ru/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54096402 s in the future -tar: ./usr/share/locale/ru: time stamp 2024-05-28 04:48:14 is 34362533.540936 s in the future -tar: ./usr/share/locale/ro/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.5409068 s in the future -tar: ./usr/share/locale/ro: time stamp 2024-05-28 04:48:14 is 34362533.54087896 s in the future -tar: ./usr/share/locale/pt_BR/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54084968 s in the future -tar: ./usr/share/locale/pt_BR: time stamp 2024-05-28 04:48:14 is 34362533.5408209 s in the future -tar: ./usr/share/locale/pt/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.5407914 s in the future -tar: ./usr/share/locale/pt: time stamp 2024-05-28 04:48:14 is 34362533.54076278 s in the future -tar: ./usr/share/locale/pl/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54073368 s in the future -tar: ./usr/share/locale/pl: time stamp 2024-05-28 04:48:14 is 34362533.5407055 s in the future -tar: ./usr/share/locale/nl/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54067656 s in the future -tar: ./usr/share/locale/nl: time stamp 2024-05-28 04:48:14 is 34362533.54064848 s in the future -tar: ./usr/share/locale/nb/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.5406189 s in the future -tar: ./usr/share/locale/nb: time stamp 2024-05-28 04:48:14 is 34362533.54059074 s in the future -tar: ./usr/share/locale/lt/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54056202 s in the future -tar: ./usr/share/locale/lt: time stamp 2024-05-28 04:48:14 is 34362533.54053382 s in the future -tar: ./usr/share/locale/ko/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.5405043 s in the future -tar: ./usr/share/locale/ko: time stamp 2024-05-28 04:48:14 is 34362533.54047636 s in the future -tar: ./usr/share/locale/ja/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54044748 s in the future -tar: ./usr/share/locale/ja: time stamp 2024-05-28 04:48:14 is 34362533.54041956 s in the future -tar: ./usr/share/locale/it/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54039068 s in the future -tar: ./usr/share/locale/it: time stamp 2024-05-28 04:48:14 is 34362533.54036244 s in the future -tar: ./usr/share/locale/hu/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54033272 s in the future -tar: ./usr/share/locale/hu: time stamp 2024-05-28 04:48:14 is 34362533.54030468 s in the future -tar: ./usr/share/locale/gl/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.5402755 s in the future -tar: ./usr/share/locale/gl: time stamp 2024-05-28 04:48:14 is 34362533.54024756 s in the future -tar: ./usr/share/locale/fr/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54021858 s in the future -tar: ./usr/share/locale/fr: time stamp 2024-05-28 04:48:14 is 34362533.54019052 s in the future -tar: ./usr/share/locale/fi/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54016122 s in the future -tar: ./usr/share/locale/fi: time stamp 2024-05-28 04:48:14 is 34362533.5401327 s in the future -tar: ./usr/share/locale/eu/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54010358 s in the future -tar: ./usr/share/locale/eu: time stamp 2024-05-28 04:48:14 is 34362533.54007506 s in the future -tar: ./usr/share/locale/es/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.54004578 s in the future -tar: ./usr/share/locale/es: time stamp 2024-05-28 04:48:14 is 34362533.54001752 s in the future -tar: ./usr/share/locale/el/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.53998834 s in the future -tar: ./usr/share/locale/el: time stamp 2024-05-28 04:48:14 is 34362533.53995974 s in the future -tar: ./usr/share/locale/de/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.53993044 s in the future -tar: ./usr/share/locale/de: time stamp 2024-05-28 04:48:14 is 34362533.53990192 s in the future -tar: ./usr/share/locale/da/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.53987286 s in the future -tar: ./usr/share/locale/da: time stamp 2024-05-28 04:48:14 is 34362533.53984466 s in the future -tar: ./usr/share/locale/cs/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.53981578 s in the future -tar: ./usr/share/locale/cs: time stamp 2024-05-28 04:48:14 is 34362533.53978748 s in the future -tar: ./usr/share/locale/ca/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.53975804 s in the future -tar: ./usr/share/locale/ca: time stamp 2024-05-28 04:48:14 is 34362533.5397301 s in the future -tar: ./usr/share/locale/bg/LC_TIME: time stamp 2024-05-28 04:48:34 is 34362553.53970106 s in the future -tar: ./usr/share/locale/bg: time stamp 2024-05-28 04:48:14 is 34362533.53967192 s in the future -tar: ./usr/lib/apt/planners: time stamp 2024-05-28 04:48:31 is 34362550.52945666 s in the future -tar: ./usr/lib/apt: time stamp 2024-05-28 04:48:31 is 34362550.52940794 s in the future -tar: ./usr/lib/aarch64-linux-gnu/perl/cross-config-5.36.0: time stamp 2024-05-28 04:48:42 is 34362561.52937742 s in the future -tar: ./usr/lib/aarch64-linux-gnu/perl: time stamp 2024-05-28 04:48:21 is 34362540.52934706 s in the future -tar: ./usr: time stamp 2024-05-28 04:48:26 is 34362545.52929576 s in the future -tar: ./run: time stamp 2024-05-28 16:30:22 is 34404661.52927088 s in the future -tar: ./etc/systemd/system/multi-user.target.wants: time stamp 2024-05-28 04:48:51 is 34362570.52924246 s in the future -tar: ./etc/systemd/system/timers.target.wants: time stamp 2024-05-28 04:48:53 is 34362572.52921208 s in the future -tar: ./etc/systemd/system: time stamp 2024-05-28 04:48:51 is 34362570.52918378 s in the future -tar: ./etc/rcS.d: time stamp 2024-05-28 04:48:49 is 34362568.52914562 s in the future -tar: ./etc/rc6.d: time stamp 2024-05-28 04:48:49 is 34362568.5291198 s in the future -tar: ./etc/rc0.d: time stamp 2024-05-28 04:48:49 is 34362568.52909408 s in the future -tar: ./etc: time stamp 2024-05-28 16:30:22 is 34404661.52905674 s in the future -tar: ./dev: time stamp 2024-05-28 16:30:22 is 34404661.5290327 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -1053,7 +16,7 @@ I: copying [./jellyfish_2.3.0.orig.tar.gz] I: copying [./jellyfish_2.3.0-15.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Sep 28 08:08:02 2022 -12 +gpgv: Signature made Thu Sep 29 10:08:02 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -1073,52 +36,84 @@ dpkg-source: info: applying gcc-12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/11234/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/D01_modify_environment starting +debug: Running on codethink10-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 27 13:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='11234' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10274 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z9T4hInG/pbuilderrc_MClt --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z9T4hInG/b1 --logfile b1/build.log jellyfish_2.3.0-15.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z9T4hInG/pbuilderrc_iUEu --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z9T4hInG/b2 --logfile b2/build.log --extrapackages usrmerge jellyfish_2.3.0-15.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink13-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 28 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/11234/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 27 00:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -1288,7 +283,7 @@ Get: 104 http://deb.debian.org/debian bookworm/main arm64 swig all 4.1.0-0.2 [321 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 time arm64 1.9-0.2 [50.6 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 yaggo all 1.5.10-6 [21.2 kB] -Fetched 49.3 MB in 3s (14.1 MB/s) +Fetched 49.3 MB in 5s (10.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1735,8 +730,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/jellyfish-2.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../jellyfish_2.3.0-15_source.changes +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/jellyfish-2.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../jellyfish_2.3.0-15_source.changes dpkg-buildpackage: info: source package jellyfish dpkg-buildpackage: info: source version 2.3.0-15 dpkg-buildpackage: info: source distribution unstable @@ -2186,7 +1190,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) @@ -2203,7 +1207,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) @@ -2235,7 +1239,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) @@ -2252,7 +1256,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) @@ -2323,15 +1327,15 @@ PASS: tests/subset_hashing.sh PASS: tests/bloom_filter.sh PASS: tests/bloom_counter.sh -PASS: tests/swig_python.sh +PASS: tests/small_mers.sh SKIP: tests/swig_ruby.sh PASS: tests/large_key.sh -PASS: tests/multi_file.sh PASS: tests/sam.sh -PASS: tests/small_mers.sh +PASS: tests/multi_file.sh PASS: tests/merge.sh -PASS: tests/swig_perl.sh +PASS: tests/swig_python.sh PASS: tests/parallel_hashing.sh +PASS: tests/swig_perl.sh PASS: unit_tests/unit_tests.sh ============================================================================ Testsuite summary for jellyfish 2.3.0 @@ -2382,7 +1386,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) @@ -2399,7 +1403,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) @@ -2431,7 +1435,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) @@ -2448,7 +1452,7 @@ /usr/bin/mkdir -p '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' -libtool: install: (cd /build/jellyfish-2.3.0; /bin/bash "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) +libtool: install: (cd /build/jellyfish-2.3.0; /bin/sh "/build/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -I/build/jellyfish-2.3.0/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-2.3.0/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) @@ -2488,7 +1492,7 @@ Installing /build/jellyfish-2.3.0/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/jellyfish/jellyfish.so make[2]: Leaving directory '/build/jellyfish-2.3.0/swig/perl5' ls -l debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so --r-xr-xr-x 1 pbuilder1 pbuilder1 1197384 Apr 26 11:50 debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/jellyfish/jellyfish.so +-r-xr-xr-x 1 pbuilder2 pbuilder2 1197384 Apr 27 14:11 debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.36/auto/jellyfish/jellyfish.so if [ ! -e debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so ] ; then sleep 1; fi chmod +w debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so @@ -2550,10 +1554,10 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'libjellyfish-2.0-2' in '../libjellyfish-2.0-2_2.3.0-15_arm64.deb'. -dpkg-deb: building package 'libjellyfish-perl-dbgsym' in '../libjellyfish-perl-dbgsym_2.3.0-15_arm64.deb'. dpkg-deb: building package 'jellyfish' in '../jellyfish_2.3.0-15_arm64.deb'. -dpkg-deb: building package 'python3-dna-jellyfish-dbgsym' in '../python3-dna-jellyfish-dbgsym_2.3.0-15_arm64.deb'. dpkg-deb: building package 'libjellyfish-2.0-dev' in '../libjellyfish-2.0-dev_2.3.0-15_arm64.deb'. +dpkg-deb: building package 'libjellyfish-perl-dbgsym' in '../libjellyfish-perl-dbgsym_2.3.0-15_arm64.deb'. +dpkg-deb: building package 'python3-dna-jellyfish-dbgsym' in '../python3-dna-jellyfish-dbgsym_2.3.0-15_arm64.deb'. dpkg-deb: building package 'libjellyfish-2.0-2-dbgsym' in '../libjellyfish-2.0-2-dbgsym_2.3.0-15_arm64.deb'. dpkg-deb: building package 'jellyfish-examples' in '../jellyfish-examples_2.3.0-15_all.deb'. dpkg-deb: building package 'libjellyfish-perl' in '../libjellyfish-perl_2.3.0-15_arm64.deb'. @@ -2566,12 +1570,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10274/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/11234 and its subdirectories -I: Current time: Wed Apr 26 11:55:02 -12 2023 -I: pbuilder-time-stamp: 1682553302 +I: removing directory /srv/workspace/pbuilder/10274 and its subdirectories +I: Current time: Thu Apr 27 14:22:24 +14 2023 +I: pbuilder-time-stamp: 1682554944